Cucsa.318770 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.318770
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description30S ribosomal protein S7, chloroplastic
Locationscaffold03076 : 275344 .. 275694 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCCGGTCGAAATATGGCTTTCAAATTCAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATCTATATATTGATAATAAAAAATTATATTACATATAAAGTGAAAACTAAAGCATTGCAATGAAATACATTACACATATCCTTAACAATAAGAATATAAAAACTAACCTATCTATTGCAACATGTTTCTATGGTCTACAGATTCTTTGGAAACATGCAAAATCACAGTGAATGAATGGTAA

mRNA sequence

TTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCCGGTCGAAATATGGCTTTCAAATTCAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACATTCTTTGGAAACATGCAAAATCACAGTGAATGAATGGTAA

Coding sequence (CDS)

TTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCCGGTCGAAATATGGCTTTCAAATTCAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACATTCTTTGGAAACATGCAAAATCACAGTGAATGAATGGTAA

Protein sequence

PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLETCKITVNEW*
Homology
[Close]
BLAST of Cucsa.318770 vs. Swiss-Prot
Match: RR7_CUCSA (30S ribosomal protein S7, chloroplastic OS=Cucumis sativus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. Swiss-Prot
Match: RR7_DRIGR (30S ribosomal protein S7, chloroplastic OS=Drimys granadensis GN=rps7-A PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. Swiss-Prot
Match: RR7_LEOCS (30S ribosomal protein S7, chloroplastic OS=Leopoldia comosa GN=rps7 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. Swiss-Prot
Match: RR7_SPAWA (30S ribosomal protein S7, chloroplastic OS=Spathiphyllum wallisii GN=rps7 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. Swiss-Prot
Match: RR7_ILLOL (30S ribosomal protein S7, chloroplastic OS=Illicium oligandrum GN=rps7-A PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. TrEMBL
Match: A0A0K1L5V7_9LILI (Ribosomal protein S7 OS=Trillium tschonoskii GN=rps7 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-18
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. TrEMBL
Match: W8E233_9ROSI (Ribosomal protein S7 OS=Cucumis hystrix GN=rps7 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-18
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. TrEMBL
Match: A0A0A0L6M3_CUCSA (Ribosomal protein S7 OS=Cucumis sativus GN=Csa_3G128920 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-18
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. TrEMBL
Match: A0A0U3E7Z1_9ROSI (30S ribosomal protein S7, chloroplastic OS=Aquilaria sinensis GN=rps7 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-17
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKG GDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGRGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. TrEMBL
Match: Q6EM81_9MAGN (30S ribosomal protein S7, chloroplastic OS=Pachysandra terminalis GN=rps7 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 95.9 bits (237), Expect = 9.3e-21
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 95.9 bits (237), Expect = 9.3e-21
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. NCBI nr
Match: gi|918020914|ref|YP_009163322.1| (30S ribosomal protein S7 (plastid) [Trillium tschonoskii])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. NCBI nr
Match: gi|68164849|ref|YP_247645.1| (ribosomal protein S7 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. NCBI nr
Match: gi|992331618|ref|YP_009229524.1| (ribosomal protein S7 (chloroplast) [Aquilaria sinensis])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-17
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKG GDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGRGDAIRKKE 139

[Close]
BLAST of Cucsa.318770 vs. NCBI nr
Match: gi|643713747|gb|KDP26412.1| (hypothetical protein JCGZ_17570 [Jatropha curcas])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 64  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 115

[Close]
BLAST of Cucsa.318770 vs. NCBI nr
Match: gi|34333512|gb|AAQ64548.1| (ribosomal protein S7 [Hernandia nymphaeifolia])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1   PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFSSELVDAAKGSGDAIHSLE 53
           PIEIGSTQGKALAIRWLLGASRKRPGRNMAFK SSELVDAAKGSGDAI   E
Sbjct: 88  PIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKE 139

The following BLAST results are available for this feature:
BLAST of Cucsa.318770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR7_CUCSA3.3e-2094.2330S ribosomal protein S7, chloroplastic OS=Cucumis sativus GN=rps7-A PE=3 SV=1[more]
RR7_DRIGR1.7e-1992.3130S ribosomal protein S7, chloroplastic OS=Drimys granadensis GN=rps7-A PE=3 SV=... [more]
RR7_LEOCS1.7e-1992.3130S ribosomal protein S7, chloroplastic OS=Leopoldia comosa GN=rps7 PE=3 SV=1[more]
RR7_SPAWA1.7e-1992.3130S ribosomal protein S7, chloroplastic OS=Spathiphyllum wallisii GN=rps7 PE=3 S... [more]
RR7_ILLOL1.7e-1992.3130S ribosomal protein S7, chloroplastic OS=Illicium oligandrum GN=rps7-A PE=3 SV... [more]
BLAST of Cucsa.318770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K1L5V7_9LILI3.7e-1894.23Ribosomal protein S7 OS=Trillium tschonoskii GN=rps7 PE=3 SV=1[more]
W8E233_9ROSI3.7e-1894.23Ribosomal protein S7 OS=Cucumis hystrix GN=rps7 PE=3 SV=1[more]
A0A0A0L6M3_CUCSA3.7e-1894.23Ribosomal protein S7 OS=Cucumis sativus GN=Csa_3G128920 PE=3 SV=1[more]
A0A0U3E7Z1_9ROSI1.4e-1792.3130S ribosomal protein S7, chloroplastic OS=Aquilaria sinensis GN=rps7 PE=3 SV=1[more]
Q6EM81_9MAGN1.8e-1792.3130S ribosomal protein S7, chloroplastic OS=Pachysandra terminalis GN=rps7 PE=3 S... [more]
BLAST of Cucsa.318770 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01240.19.3e-2192.31ATCG01240.1 ribosomal protein S7[more]
ATCG00900.19.3e-2192.31ATCG00900.1 Ribosomal protein S7p/S5e family protein[more]
BLAST of Cucsa.318770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|918020914|ref|YP_009163322.1|5.3e-1894.2330S ribosomal protein S7 (plastid) [Trillium tschonoskii][more]
gi|68164849|ref|YP_247645.1|5.3e-1894.23ribosomal protein S7 [Cucumis sativus][more]
gi|992331618|ref|YP_009229524.1|2.0e-1792.31ribosomal protein S7 (chloroplast) [Aquilaria sinensis][more]
gi|643713747|gb|KDP26412.1|2.6e-1792.31hypothetical protein JCGZ_17570 [Jatropha curcas][more]
gi|34333512|gb|AAQ64548.1|2.6e-1792.31ribosomal protein S7 [Hernandia nymphaeifolia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000235Ribosomal_S5/S7
IPR023798Ribosomal_S7_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.318770.1Cucsa.318770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 1..53
score: 5.8
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 1..49
score: 1.9
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 1..50
score: 1.3
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 1..49
score: 1.31
NoneNo IPR availablePANTHERPTHR11205:SF2230S RIBOSOMAL PROTEIN S7, CHLOROPLASTICcoord: 1..53
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.318770Watermelon (Charleston Gray)cgywcgB551
Cucsa.318770Watermelon (97103) v1cgywmB580
Cucsa.318770Cucurbita pepo (Zucchini)cgycpeB0837
Cucsa.318770Cucurbita pepo (Zucchini)cgycpeB0838
Cucsa.318770Bottle gourd (USVL1VR-Ls)cgylsiB520
Cucsa.318770Melon (DHL92) v3.6.1cgymedB525
Cucsa.318770Melon (DHL92) v3.6.1cgymedB526
Cucsa.318770Silver-seed gourdcarcgyB0622
Cucsa.318770Silver-seed gourdcarcgyB1170
Cucsa.318770Cucumber (Chinese Long) v3cgycucB495
Cucsa.318770Watermelon (97103) v2cgywmbB556
Cucsa.318770Wax gourdcgywgoB638
Cucsa.318770Cucurbita maxima (Rimu)cgycmaB0881
Cucsa.318770Cucurbita maxima (Rimu)cgycmaB0882
Cucsa.318770Cucurbita moschata (Rifu)cgycmoB0878
Cucsa.318770Cucurbita moschata (Rifu)cgycmoB0879
Cucsa.318770Wild cucumber (PI 183967)cgycpiB481
Cucsa.318770Cucumber (Chinese Long) v2cgycuB456
Cucsa.318770Melon (DHL92) v3.5.1cgymeB524
Cucsa.318770Melon (DHL92) v3.5.1cgymeB525