Cucsa.311370 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.311370
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionE3 ubiquitin-protein ligase
Locationscaffold02995 : 991289 .. 991749 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGA

mRNA sequence

AGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGA

Coding sequence (CDS)

AGCTTGAACTTGAAAACCCATCCTTATTCCACGACTTCCTCCTTCAATTCCTCTCTCCGGCTGACTCCGCCGCCATATTCCACAACATCTCCTCCTTCGCCCTTCAACTGGCTGCCGGCAACCTCAATCTCAACTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGATAAACCTGAACCTGAACCCACCACAATATTCACCGCCGGTGAGGAATGGGGTGCCGGCGTCGGTCATGGAGCGGCTTATGAATGAGAAATATGATGATGGGAATGGAGGGGAAGGGATGGGAGGTCAATGCTGCGTTTGTTATGAGGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGCAACGAGAATCCCCTGCGGGCACGTCTATCACAAGTCCTGTATTCTCAAATGGCTCAACGTCAACAATTCATGTCCTTTGTGCAGAAGTGAATTTCGTTGA

Protein sequence

LELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR*
Homology
[Close]
BLAST of Cucsa.311370 vs. Swiss-Prot
Match: YGI4_SCHPO (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 28/83 (33.73%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 68  YSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGH 127
           + PPV+  V  +       + ++  +  + M   C +CY+D+N   E ++++AT++PCGH
Sbjct: 79  FQPPVKRAVKEAW------DSFEPLSNDQLMDLTCPICYDDMN---ENDEKQATKMPCGH 138

Query: 128 VYHKSCILKWLNVNNSCPLCRSE 151
           ++ K+C+ KWL  + +CPLCR E
Sbjct: 139 IFGKNCLQKWLENHCTCPLCRKE 152

[Close]
BLAST of Cucsa.311370 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 

Query: 101 QCCVCYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 151
           QC VC +D      EE  EA ++PC H+YHK C+L WL ++NSCP+CR E
Sbjct: 223 QCAVCMDDF-----EEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHE 267

[Close]
BLAST of Cucsa.311370 vs. Swiss-Prot
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 1 

Query: 75  GVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSCI 134
           G+ A  +  L +++Y +G+   G    C +C  D      E+ E+   +PC H YH  CI
Sbjct: 261 GLSADTIASLPSKRYKEGDNQNGTNESCVICRLDY-----EDDEDLILLPCKHSYHSECI 320

Query: 135 LKWLNVNNSCPLCRSE 151
             WL +N  CP+C +E
Sbjct: 321 NNWLKINKVCPVCSAE 331

[Close]
BLAST of Cucsa.311370 vs. Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 30/81 (37.04%), Postives = 41/81 (50.62%), Query Frame = 1 

Query: 70  PPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVY 129
           PP    V  S+   +++ +  D       G +C VC  +      EE+E    +PC H++
Sbjct: 53  PPAAKAVVQSLPVVIISPEQAD------KGVKCPVCLLEF-----EEQESVREMPCKHLF 112

Query: 130 HKSCILKWLNVNNSCPLCRSE 151
           H  CIL WLN  NSCPLCR E
Sbjct: 113 HTGCILPWLNKTNSCPLCRLE 122

[Close]
BLAST of Cucsa.311370 vs. Swiss-Prot
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1 

Query: 98  MGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCR 149
           MG +C VC ED   E     EE  ++PC H +H SCI+ WL ++++CP+CR
Sbjct: 224 MGLECPVCKEDYTVE-----EEVRQLPCNHFFHSSCIVPWLELHDTCPVCR 269

[Close]
BLAST of Cucsa.311370 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 3.9e-85
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   LELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISIN 60
           LELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISIN
Sbjct: 64  LELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISIN 123

Query: 61  LNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEA 120
           LNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEA
Sbjct: 124 LNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEA 183

Query: 121 TRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 153
           TRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR
Sbjct: 184 TRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 215

[Close]
BLAST of Cucsa.311370 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-37
Identity = 87/155 (56.13%), Postives = 109/155 (70.32%), Query Frame = 1 

Query: 2   ELENPSLF-HDFLLQFLSPADSA-----AIFHNISSFALQLAAGNLNLNFHLIATVDLLY 61
           ELE+P    H  L +FLS  + +     AIF  ISSFA QL AGNLN NFH+IA +D +Y
Sbjct: 69  ELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFVY 128

Query: 62  TISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREE 121
           T  ++L+  P + +  VR G P S +ERLM EKYD GNGGE M  +C VCYEDL+ + E+
Sbjct: 129 THWVDLD--PAEDAAAVRQGAPRSAIERLMKEKYD-GNGGEEMEDECSVCYEDLHGKTEK 188

Query: 122 EKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 151
           EKE  +RIPCGH++HKSCILKWL ++NSCPLCR E
Sbjct: 189 EKE-VSRIPCGHMFHKSCILKWLKISNSCPLCRGE 219

[Close]
BLAST of Cucsa.311370 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-35
Identity = 89/163 (54.60%), Postives = 112/163 (68.71%), Query Frame = 1 

Query: 2   ELENPSLF-HDFLLQFLSPADSAA-----IFHNISSFALQL---AAGNLNLNFHLIATVD 61
           ELE+P    + FL +FLS  D +A     IF+NISSFA Q+   A  N+N+NFH+IA VD
Sbjct: 69  ELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVD 128

Query: 62  LLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGG--QCCVCYEDLN 121
           ++YT  ++L+  P + +P VR G   SV+ER+M EKYD GNGGE   G  QC VCYE L 
Sbjct: 129 IVYTHWVDLD--PAEDAPAVRKGASTSVIERVMKEKYD-GNGGEEKEGDDQCSVCYEQLY 188

Query: 122 CEREEEKE---EATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 151
            +RE E E   E +RIPCGH+YHKSCILKWL ++NSCPLCR E
Sbjct: 189 GKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRE 228

[Close]
BLAST of Cucsa.311370 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-18
Identity = 64/154 (41.56%), Postives = 82/154 (53.25%), Query Frame = 1 

Query: 2   ELENPSLFHDFLLQFLSPAD--SAAIFHNISSFALQLAAGNL--NLNFHLIATVDLLYTI 61
           +L++P LFH  + QFL   +     I   I+SF   +  GN   N NF++IA VDL+  I
Sbjct: 63  QLQHP-LFH--IRQFLYSLNIRRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVI 122

Query: 62  SINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEK 121
            I           P   G     +ERL   K ++  G       C VC ++L+CE    K
Sbjct: 123 RIE--------EQPRAEGWRGVAVERLSKLKSEEEKG------DCSVCLDELDCE----K 182

Query: 122 EEATRIPCGHVYHKSCILKWLNVNNSCPLCRSEF 152
            E  RIPCGHVYH+SCI KWLN +NSCPLCRS F
Sbjct: 183 REVIRIPCGHVYHESCIFKWLNSSNSCPLCRSSF 195

[Close]
BLAST of Cucsa.311370 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-16
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 1 

Query: 2   ELENPSLFHDFLLQFLS--PADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISI 61
           +L++P  +   +L  L+  PA S  +   I+S  LQ+   N   NFH++A VD +  I +
Sbjct: 67  QLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWL 126

Query: 62  ----------NLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDL 121
                        +   +  P V+ GV  +  ERL +E+  +  G       C +C ++L
Sbjct: 127 PSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG------DCSICLDEL 186

Query: 122 NCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCR 149
           +CE    K E  RIPCGHVYH+SCI KWL  +NSCPLCR
Sbjct: 187 SCE----KREVMRIPCGHVYHESCIFKWLENHNSCPLCR 215

[Close]
BLAST of Cucsa.311370 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-10
Identity = 32/88 (36.36%), Postives = 45/88 (51.14%), Query Frame = 1 

Query: 65  PPQYSPPVRNGVPASVM--ERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATR 124
           PP  S P  N +P+  +  + L N+             QC VC E+     +     AT 
Sbjct: 196 PPPASEPTINSLPSVKITPQHLTNDM-----------SQCTVCMEEFIVGGD-----ATE 255

Query: 125 IPCGHVYHKSCILKWLNVNNSCPLCRSE 151
           +PC H+YHK CI+ WL +NNSCP+CR +
Sbjct: 256 LPCKHIYHKDCIVPWLRLNNSCPICRRD 267

[Close]
BLAST of Cucsa.311370 vs. TAIR10
Match: AT3G19910.1 (AT3G19910.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 1 

Query: 75  GVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSCI 134
           G+ A  +  L +++Y +G+   G    C +C  D      E+ E+   +PC H YH  CI
Sbjct: 261 GLSADTIASLPSKRYKEGDNQNGTNESCVICRLDY-----EDDEDLILLPCKHSYHSECI 320

Query: 135 LKWLNVNNSCPLCRSE 151
             WL +N  CP+C +E
Sbjct: 321 NNWLKINKVCPVCSAE 331

[Close]
BLAST of Cucsa.311370 vs. TAIR10
Match: AT5G08139.1 (AT5G08139.1 RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-09
Identity = 31/85 (36.47%), Postives = 43/85 (50.59%), Query Frame = 1 

Query: 66  PQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPC 125
           P  S    N +P  ++E    E  DDG      G  C VC +++N   +     A ++PC
Sbjct: 282 PPTSKSFLNNLPVVLLE---GENDDDG------GLVCAVCKDEMNIGNK-----AVQLPC 341

Query: 126 GHVYHKSCILKWLNVNNSCPLCRSE 151
            H YH  CI+ WL V N+CP+CR E
Sbjct: 342 NHKYHSECIVPWLKVRNTCPVCRYE 352

[Close]
BLAST of Cucsa.311370 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 25/71 (35.21%), Postives = 37/71 (52.11%), Query Frame = 1 

Query: 79  SVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSCILKWL 138
           ++  RL  +KY            CCVC E+      +E+EE  R+ CGH +H  CI +WL
Sbjct: 569 TISNRLKQQKYKSSTRSSQEVEPCCVCQEEY-----KEEEEIGRLECGHDFHSQCIKEWL 628

Query: 139 NVNNSCPLCRS 150
              N CP+C++
Sbjct: 629 KQKNLCPICKT 634

[Close]
BLAST of Cucsa.311370 vs. TAIR10
Match: AT4G32600.1 (AT4G32600.1 RING/U-box superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-09
Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 1 

Query: 90  DDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRS 149
           D+     G    CC+C       +    EE   +PC H +HK C+ KWL +N SCPLC+S
Sbjct: 351 DNERAISGEDAVCCICLA-----KYANNEELRELPCSHFFHKECVDKWLKINASCPLCKS 406

Query: 150 E 151
           E
Sbjct: 411 E 406

[Close]
BLAST of Cucsa.311370 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 5.6e-85
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   LELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISIN 60
           LELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISIN
Sbjct: 64  LELENPSLFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISIN 123

Query: 61  LNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEA 120
           LNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEA
Sbjct: 124 LNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEA 183

Query: 121 TRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 153
           TRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR
Sbjct: 184 TRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 215

[Close]
BLAST of Cucsa.311370 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 6.0e-71
Identity = 133/154 (86.36%), Postives = 140/154 (90.91%), Query Frame = 1 

Query: 1   LELENPSLF-HDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISI 60
           LELENP  F HD LLQFLSPADS AIFHNISSFALQLAAGNLNLNFHLIATVDLLYTIS+
Sbjct: 65  LELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISV 124

Query: 61  NLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEK-E 120
           +L+L+PPQYSP VRNG PASV+ERLM+EKYDDGNG E MG QCCVCYEDLNCEREEEK E
Sbjct: 125 DLDLDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLNCEREEEKEE 184

Query: 121 EATRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 153
           E TRIPCGHVYHK CILKWLN+NNSCPLCR EFR
Sbjct: 185 EVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 218

[Close]
BLAST of Cucsa.311370 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.3e-37
Identity = 87/155 (56.13%), Postives = 109/155 (70.32%), Query Frame = 1 

Query: 2   ELENPSLF-HDFLLQFLSPADSA-----AIFHNISSFALQLAAGNLNLNFHLIATVDLLY 61
           ELE+P    H  L +FLS  + +     AIF  ISSFA QL AGNLN NFH+IA +D +Y
Sbjct: 69  ELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFVY 128

Query: 62  TISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREE 121
           T  ++L+  P + +  VR G P S +ERLM EKYD GNGGE M  +C VCYEDL+ + E+
Sbjct: 129 THWVDLD--PAEDAAAVRQGAPRSAIERLMKEKYD-GNGGEEMEDECSVCYEDLHGKTEK 188

Query: 122 EKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 151
           EKE  +RIPCGH++HKSCILKWL ++NSCPLCR E
Sbjct: 189 EKE-VSRIPCGHMFHKSCILKWLKISNSCPLCRGE 219

[Close]
BLAST of Cucsa.311370 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-35
Identity = 89/163 (54.60%), Postives = 112/163 (68.71%), Query Frame = 1 

Query: 2   ELENPSLF-HDFLLQFLSPADSAA-----IFHNISSFALQL---AAGNLNLNFHLIATVD 61
           ELE+P    + FL +FLS  D +A     IF+NISSFA Q+   A  N+N+NFH+IA VD
Sbjct: 69  ELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVD 128

Query: 62  LLYTISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGG--QCCVCYEDLN 121
           ++YT  ++L+  P + +P VR G   SV+ER+M EKYD GNGGE   G  QC VCYE L 
Sbjct: 129 IVYTHWVDLD--PAEDAPAVRKGASTSVIERVMKEKYD-GNGGEEKEGDDQCSVCYEQLY 188

Query: 122 CEREEEKE---EATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 151
            +RE E E   E +RIPCGH+YHKSCILKWL ++NSCPLCR E
Sbjct: 189 GKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRE 228

[Close]
BLAST of Cucsa.311370 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-19
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 1 

Query: 8   LFHDFLLQFLSPADSAA---IFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLNLN 67
           L ++FL  F   + ++A   I   I SFALQ    N++ +F + A V+ +  + I     
Sbjct: 70  LVNEFLGSFNLHSFASARRTICRKILSFALQFH--NVHGSFKIEANVEHVEDLIIGEQGF 129

Query: 68  PPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIP 127
               SPP   G P S +ERL  EK+D  N  E +G  C VCYE+L    + + +E +RIP
Sbjct: 130 QETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIG-DCSVCYEEL----KGQGKEVSRIP 189

Query: 128 CGHVYHKSCILKWLNVNNSCPLCRS 150
           CGHVYHKSCIL WL +NNSCPLCR+
Sbjct: 190 CGHVYHKSCILTWLQINNSCPLCRA 207

The following BLAST results are available for this feature:
BLAST of Cucsa.311370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YGI4_SCHPO4.5e-1033.73Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strai... [more]
RING1_GOSHI1.7e-0952.00E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
BBR_ARATH2.5e-0832.89E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1[more]
RN181_DANRE1.6e-0737.04E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2[more]
RN115_HUMAN1.6e-0745.10E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2[more]
BLAST of Cucsa.311370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHI3_CUCSA3.9e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
A0A0A0LRB0_CUCSA2.3e-3756.13Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA2.2e-3554.60Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA5.4e-1841.56Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
A0A0A0K696_CUCSA3.8e-1635.85Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
BLAST of Cucsa.311370 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60360.12.2e-1036.36 RING/U-box superfamily protein[more]
AT3G19910.11.4e-0932.89 RING/U-box superfamily protein[more]
AT5G08139.11.8e-0936.47 RING/U-box superfamily protein[more]
AT1G45180.12.4e-0935.21 RING/U-box superfamily protein[more]
AT4G32600.13.1e-0939.34 RING/U-box superfamily protein[more]
BLAST of Cucsa.311370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778689036|ref|XP_011652885.1|5.6e-85100.00PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|6.0e-7186.36PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778674460|ref|XP_011650219.1|3.3e-3756.13PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|3.1e-3554.60hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659121671|ref|XP_008460768.1|9.1e-1943.45PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.311370.1Cucsa.311370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 101..148
score: 1.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 102..147
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 102..148
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 99..151
score: 1.6
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 96..150
score: 4.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 101..151
score: 8.73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.311370Csa3G889100Cucumber (Chinese Long) v2cgycuB450
Cucsa.311370MELO3C003583Melon (DHL92) v3.5.1cgymeB517
Cucsa.311370CSPI03G44970Wild cucumber (PI 183967)cgycpiB473
Cucsa.311370MELO3C003583.2Melon (DHL92) v3.6.1cgymedB517
Cucsa.311370CsaV3_3G047400Cucumber (Chinese Long) v3cgycucB487
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.311370Watermelon (97103) v2cgywmbB539
Cucsa.311370Watermelon (97103) v2cgywmbB546
Cucsa.311370Wax gourdcgywgoB632
Cucsa.311370Wax gourdcgywgoB628
Cucsa.311370Cucumber (Gy14) v1cgycgyB102
Cucsa.311370Cucurbita maxima (Rimu)cgycmaB0854
Cucsa.311370Cucurbita maxima (Rimu)cgycmaB0860
Cucsa.311370Cucurbita maxima (Rimu)cgycmaB0863
Cucsa.311370Cucurbita maxima (Rimu)cgycmaB0876
Cucsa.311370Cucurbita moschata (Rifu)cgycmoB0852
Cucsa.311370Cucurbita moschata (Rifu)cgycmoB0858
Cucsa.311370Cucurbita moschata (Rifu)cgycmoB0862
Cucsa.311370Cucurbita moschata (Rifu)cgycmoB0873
Cucsa.311370Wild cucumber (PI 183967)cgycpiB469
Cucsa.311370Cucumber (Chinese Long) v2cgycuB446
Cucsa.311370Melon (DHL92) v3.5.1cgymeB513
Cucsa.311370Watermelon (Charleston Gray)cgywcgB536
Cucsa.311370Watermelon (Charleston Gray)cgywcgB545
Cucsa.311370Watermelon (97103) v1cgywmB566
Cucsa.311370Watermelon (97103) v1cgywmB572
Cucsa.311370Cucurbita pepo (Zucchini)cgycpeB0814
Cucsa.311370Cucurbita pepo (Zucchini)cgycpeB0824
Cucsa.311370Cucurbita pepo (Zucchini)cgycpeB0828
Cucsa.311370Cucurbita pepo (Zucchini)cgycpeB0832
Cucsa.311370Bottle gourd (USVL1VR-Ls)cgylsiB503
Cucsa.311370Bottle gourd (USVL1VR-Ls)cgylsiB513
Cucsa.311370Melon (DHL92) v3.6.1cgymedB512
Cucsa.311370Silver-seed gourdcarcgyB0068
Cucsa.311370Silver-seed gourdcarcgyB0712
Cucsa.311370Silver-seed gourdcarcgyB1097
Cucsa.311370Cucumber (Chinese Long) v3cgycucB485