Cucsa.311090 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.311090
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionHelicase-like protein
Locationscaffold02995 : 752138 .. 754633 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTGCATGATCAATGGAAAATGTAGATTTCATTATCCTCGACAGTTTTCCTCGAAAACAATGCAAGGAAAGGATGCATATCCAATATATAGAAAGAGAGACGACGGAACACAAGTATTTATAATAATATTACTTTTTATTGTTTTATATTTATTTCTCTATAATGTCTTTCATAATAGCGTTAATTTCCTCAATTTATTTGTTAAAAAATATATCTTTACAATTATATCAGGTATCAATAAGAAAAAAGACATTTGATAATCGATGGGTTGTGCCTTATAATCCATACCTATTTTTGAGATACAATTGTCACATTAATGTTGAAATATGCTCGGGATTGAAAGCAGTTAAATATTTATACAAGTATATTTACAAGGGGAATGATAGAGCAGTTGTTTATATATCACATGATGGTGACAATAAAGGTATTGATGAAATAAGAGATTATCAAGATGCAAGATGGGTATCAGCTCAAGAGGCATTATGGAGAATTTATGATTTTAAACTGAACGAGATATATCCTCCAGTTATAAACTTACAACTTTACCTTCCAAATATGCATTGTGTTTCTTATTGGAAAAATCAAAATTTGAAGAAACTTATTTGTTAGGATTATGTCTAAAAAACAATGTTAACAGAGTACTTTCATATGTGTCGAACATCTGAAACAGTCCGAAATTTTTTATACAAAGAGTTTCCTGAACATTATGTATAGGACAAACATCTACGAATTTGGAAGGAGAGGAAAAAATGAATAGCTATATCACGCATTGTAGGAGCAAATCCAAGGGAAGAAGAAAGATATTACTTGTGTTTGCTACTAAATCATGTCAGGGGATCGACGTCATTTGAGTCCTTATTGATAGTCAATAGAAAAAGAGTTCAAACATTTAAAGATTCAGCAAAAGAAAGAGGAGTACTACTGGAATCTGATGAAAATGTAACATAATGTTTGGATGAAGCAGCTTCGTTTGCTATGCCTTATGCTTTTCGAAGACTTTTTGCAACAATCTTAGTGTATTATGAACCTGTAGATGTTAGAAAACTGTGAGAATGATATTCTCATGAATTGTTACATGATTATAGAAAAGACAAGCCAAAGAATGTAGAATATCAATTGTAACACAGTTTAAGAGATATAAAAGTGTTCTTAGAGTCAATGAACAAACAAATCACTATATATGATTTGCCTGAAATCAAACATATGCCAGAAGGTGGAAACAATTGCTATATAAAAAGAAATAATTGATGAAAAATCAATTGTAGTATCAGATGAAGATATTCAAGCTCATTCAAAGTTGAATGAAGACCAAAAGATTGCATATGATATTATTCTTGACAAAATTGTTAGTAATAAAAGTGGTGTATTTTTTATTGATAGGCCAAGAGGAACCGGAAAAACATTTTTGTATCGTGCTTTGTTACCTACTATAAGATCAATAAATATGATTGCAATTGCAACAGCAACATCAGGCGTTGCTGCTTCAATTACGTCAGGGGGCCGAACAACACATTCTAGATTTAATATACCATTAGAAACACATGAGTCATCTATATGCAATATTTCTAAGCAAAGTAACAATGTAGAATTGATCAAGCAAACAAAAGTAATAATTTGGGACGCTACACCAATGGCAAAAAAGGCCGCAATAGAAGCAGTTGACAGAACTTTTAGAGATATAATGGATAATCCAGAACCATTAGGTGGAAAAGTGGTTGTGTTTGGAGGAGATTTTCGACAAGTGTTACCTATTGTCCCACAAGCTACAAGACAACAAACTACTAATGAAAGTTTGGTAAAGTTGTACATTTGGAATAAAATGGAGAAAATCCAACTAACTAAAAATATGAGAGCTCAAAGTGATACTCGTTTTGCATAATATTTGTTGAAGATTGGAAACGGAACTGAAATGTCAACAGAAGATGATTATATTTGTCTCCCTTCCAATATCACTGTTACAGGTGCAAATGAAGAAGATTCAATATTGAAGTTATTGAATATTGTTTATGCTGATCTGAAAACGCATGCTACTTCAGCAAATTACATGACTAGTAGAGCAATTCTATCGACAACAAATGAGTATGTTGACCAAATCAGTGAAAGAATGATTGAGCTGTTTCCTTCTTCCATGAGTTATGATGAAGCAATTGATGATACACATAATTATTATCAAGAGAAATTTCTCAACTCATTGTTGCCTAATGGTGTTCCTCCACACAAATTGTTTCTTAAAAAAGATTGCCCAGTTATACTATTGAGAAACTTAGACCCAGGTAATGGTCTATGTAATGGAACTAGAATGGTTTGTCGTAAGTTTCGCAAAAATATAATTTATGCAGAAATTGCAACTGGACAAAATGCAGGAAAAAAAGTTGTTCAACCACGAATACCAATGAGTCTTGCAAACGACAAAGGGTATCCATTCAAGTTCAAGAGAAAAAATTTTCCAATAAGATTATGTTTTGCAATGACTATCAAGAAGGCTCAATGA

mRNA sequence

ATGTTCGTGCATGATCAATGGAAAATGTAGATTTCATTATCCTCGACAGTTTTCCTCGAAAACAATGCAAGGAAAGGATGCATATCCAATATATAGAAAGAGAGACGACGGAACACAAGTATCAATAAGAAAAAAGACATTTGATAATCGATGGGTTGTGCCTTATAATCCATACCTATTTTTGAGATACAATTGTCACATTAATGTTGAAATATGCTCGGGATTGAAAGCAGTTAAATATTTATACAAGTATATTTACAAGGGGAATGATAGAGCAGTTGTTTATATATCACATGATGGTGACAATAAAGGTATTGATGAAATAAGAGATTATCAAGATGCAAGATGGGTATCAGCTCAAGAGGCATTATGGAGAATTTATGATTTTAAACTGAACGAGATATATCCTCCAGTTATAAACTTACAACTTTACCTTCCAAATATGCATTGTGTTTCTTATTGGAAAAATCAAAATTTGAAGAAACTTATTTATGAAGATATTCAAGCTCATTCAAAGTTGAATGAAGACCAAAAGATTGCATATGATATTATTCTTGACAAAATTGTTACAACATCAGGCGTTGCTGCTTCAATTACGTCAGGGGGCCGAACAACACATTCTAGATTTAATATACCATTAGAAACACATGAGTCATCTATATGCAATATTTCTAAGCAAAGTAACAATGTAGAATTGATCAAGCAAACAAAAGTAATAATTTGGGACGCTACACCAATGGCAAAAAAGGCCGCAATAGAAGCAGTTGACAGAACTTTTAGAGATATAATGGATAATCCAGAACCATTAGGTGGAAAAGTGGTTGTGTTTGGAGGAGATTTTCGACAAGTGTTACCTATTGTCCCACAAGCTACAAGACAACAAACTACTAATGAAAGTTTGGTAAAGTTGTACATTTGGAATAAAATGGAGAAAATCCAACTAACTAAAAATATGAGAGCTCAAAAAGATGATTATATTTGTCTCCCTTCCAATATCACTGTTACAGGTGCAAATGAAGAAGATTCAATATTGAAGTTATTGAATATTGTTTATGCTGATCTGAAAACGCATGCTACTTCAGCAAATTACATGACTAGTAGAGCAATTCTATCGACAACAAATGAGTATGTTGACCAAATCAGTGAAAGAATGATTGAGCTGTTTCCTTCTTCCATGAGTTATGATGAAGCAATTGATGATACACATAATTATTATCAAGAGAAATTTCTCAACTCATTGTTGCCTAATGAAATTGCAACTGGACAAAATGCAGGAAAAAAAGTTGTTCAACCACGAATACCAATGAGTCTTGCAAACGACAAAGGGTATCCATTCAAGTTCAAGAGAAAAAATTTTCCAATAAGATTATGTTTTGCAATGACTATCAAGAAGGCTCAATGA

Coding sequence (CDS)

ATGTTCGTGCATGATCAATGGAAAATGTAGATTTCATTATCCTCGACAGTTTTCCTCGAAAACAATGCAAGGAAAGGATGCATATCCAATATATAGAAAGAGAGACGACGGAACACAAGTATCAATAAGAAAAAAGACATTTGATAATCGATGGGTTGTGCCTTATAATCCATACCTATTTTTGAGATACAATTGTCACATTAATGTTGAAATATGCTCGGGATTGAAAGCAGTTAAATATTTATACAAGTATATTTACAAGGGGAATGATAGAGCAGTTGTTTATATATCACATGATGGTGACAATAAAGGTATTGATGAAATAAGAGATTATCAAGATGCAAGATGGGTATCAGCTCAAGAGGCATTATGGAGAATTTATGATTTTAAACTGAACGAGATATATCCTCCAGTTATAAACTTACAACTTTACCTTCCAAATATGCATTGTGTTTCTTATTGGAAAAATCAAAATTTGAAGAAACTTATTTATGAAGATATTCAAGCTCATTCAAAGTTGAATGAAGACCAAAAGATTGCATATGATATTATTCTTGACAAAATTGTTACAACATCAGGCGTTGCTGCTTCAATTACGTCAGGGGGCCGAACAACACATTCTAGATTTAATATACCATTAGAAACACATGAGTCATCTATATGCAATATTTCTAAGCAAAGTAACAATGTAGAATTGATCAAGCAAACAAAAGTAATAATTTGGGACGCTACACCAATGGCAAAAAAGGCCGCAATAGAAGCAGTTGACAGAACTTTTAGAGATATAATGGATAATCCAGAACCATTAGGTGGAAAAGTGGTTGTGTTTGGAGGAGATTTTCGACAAGTGTTACCTATTGTCCCACAAGCTACAAGACAACAAACTACTAATGAAAGTTTGGTAAAGTTGTACATTTGGAATAAAATGGAGAAAATCCAACTAACTAAAAATATGAGAGCTCAAAAAGATGATTATATTTGTCTCCCTTCCAATATCACTGTTACAGGTGCAAATGAAGAAGATTCAATATTGAAGTTATTGAATATTGTTTATGCTGATCTGAAAACGCATGCTACTTCAGCAAATTACATGACTAGTAGAGCAATTCTATCGACAACAAATGAGTATGTTGACCAAATCAGTGAAAGAATGATTGAGCTGTTTCCTTCTTCCATGAGTTATGATGAAGCAATTGATGATACACATAATTATTATCAAGAGAAATTTCTCAACTCATTGTTGCCTAATGAAATTGCAACTGGACAAAATGCAGGAAAAAAAGTTGTTCAACCACGAATACCAATGAGTCTTGCAAACGACAAAGGGTATCCATTCAAGTTCAAGAGAAAAAATTTTCCAATAAGATTATGTTTTGCAATGACTATCAAGAAGGCTCAATGA

Protein sequence

CSCMINGKCRFHYPRQFSSKTMQGKDAYPIYRKRDDGTQVSIRKKTFDNRWVVPYNPYLFLRYNCHINVEICSGLKAVKYLYKYIYKGNDRAVVYISHDGDNKGIDEIRDYQDARWVSAQEALWRIYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLIYEDIQAHSKLNEDQKIAYDIILDKIVTTSGVAASITSGGRTTHSRFNIPLETHESSICNISKQSNNVELIKQTKVIIWDATPMAKKAAIEAVDRTFRDIMDNPEPLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVKLYIWNKMEKIQLTKNMRAQKDDYICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMTSRAILSTTNEYVDQISERMIELFPSSMSYDEAIDDTHNYYQEKFLNSLLPNEIATGQNAGKKVVQPRIPMSLANDKGYPFKFKRKNFPIRLCFAMTIKKAQ*
Homology
[Close]
BLAST of Cucsa.311090 vs. Swiss-Prot
Match: RRM3_YEAST (ATP-dependent DNA helicase RRM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRM3 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-06
Identity = 57/265 (21.51%), Postives = 113/265 (42.64%), Query Frame = 1 

Query: 189 VTTSGVAASITSGGRTTH--SRFNIPLETHESSICNISKQSNNVELIKQTKVIIWDATPM 248
           +T S   A++T GG T H  S   I  +T +  +  I  Q + +   + TKV+I D   M
Sbjct: 282 ITASTGLAAVTIGGSTLHKWSGIGIGNKTIDQLVKKIQSQKDLLAAWRYTKVLIIDEISM 341

Query: 249 AKKAAIEAVDRTFRDIMDNPEPLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVKLYIW 308
                ++ +++  R I  N +P GG  +V  GDF Q+ P+       +    ++VK    
Sbjct: 342 VDGNLLDKLEQIARRIRKNDDPFGGIQLVLTGDFFQLPPVA------KKDEHNVVKFCFE 401

Query: 309 NKMEKIQLTKNMRAQKDDYICLPSNITVTGANEEDSILKLLNIV-YADLKTHATSANYMT 368
           ++M K  + K +             +T     +++ ++ +LN + Y +L           
Sbjct: 402 SEMWKRCIQKTIL------------LTKVFRQQDNKLIDILNAIRYGELTVDIAKTIRNL 461

Query: 369 SRAI----------LSTTNEYVDQISERMIELFPSSMSYDEAIDDTHNYYQEKFLNSLLP 428
           +R I          L  T   V+  + + ++  P  +   +A+D+    YQ    +SL+ 
Sbjct: 462 NRDIDYADGIAPTELYATRREVELSNVKKLQSLPGDLYEFKAVDNAPERYQAILDSSLMV 521

Query: 429 NE-IATGQNAGKKVVQPRIPMSLAN 440
            + +A  ++A   +++ +  + L N
Sbjct: 522 EKVVALKEDAQVMMLKNKPDVELVN 528

[Close]
BLAST of Cucsa.311090 vs. TrEMBL
Match: C6JRR9_SORBI (Putative uncharacterized protein Sb0012s017630 OS=Sorghum bicolor GN=Sb0012s017630 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.0e-73
Identity = 172/438 (39.27%), Postives = 241/438 (55.02%), Query Frame = 1 

Query: 13  YPRQFSSKTMQGKDAYPIYRKRDDGTQVSIRKKTFDNRWVVPYNPYLFLRYNCHINVEIC 72
           YP Q + + +QGKD+YP+YR+RDDG +  +     DNRWVVPYNPYL   +NCHINVE C
Sbjct: 30  YPGQ-TPQDLQGKDSYPVYRRRDDGQKEKVHGHELDNRWVVPYNPYLLRLFNCHINVEAC 89

Query: 73  SGLKAVKYLYKYIYKGNDRAVVYISHDGDNK----GIDEIRD--YQDARWVSAQE---AL 132
             +KAVKYL+KYIYKG+DRA V +  + D K     +DEI+   +++A  + A E   AL
Sbjct: 90  GSIKAVKYLFKYIYKGHDRASVAV-READKKDTEGNVDEIKQEIFEEAS-IEANEDDMAL 149

Query: 133 WRIYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLIYEDIQAHSKLNEDQKIAYDI 192
               + +    Y  +++                   K  +Y  + A  +  +   +A  I
Sbjct: 150 SNTLNVEQRAAYDQIMSSVDTKDGGLFFVDGPGGTGKTYLYRALIAAIRSQKKIVVATAI 209

Query: 193 ILDKIVTTSGVAASITSGGRTTHSRFNIPLETHESSICNISKQSNNVELIKQTKVIIWDA 252
                   SGVAASI  GGRT HSRF IPL     + C  +KQS   +L++ + +IIWD 
Sbjct: 210 --------SGVAASIMPGGRTAHSRFKIPLTIDNGAFCTFTKQSGTAKLLRASSLIIWDE 269

Query: 253 TPMAKKAAIEAVDRTFRDIMDNPE-PLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVK 312
             M K+ +IEA+D + RDIMD  E P GGK VVFGGDFRQVLP+V + +R Q        
Sbjct: 270 ASMTKRQSIEALDNSLRDIMDRSELPFGGKTVVFGGDFRQVLPVVHRGSRAQ-------- 329

Query: 313 LYIWNKMEKIQLTKNMRAQK--------------------DDYICLPSNITVTGANEEDS 372
               + M  ++L  NMRA+                     DD ICLP +I ++   E+  
Sbjct: 330 ----DSMRHLKLVHNMRAKSDPWFAEYLLRVGGGSEEATVDDEICLPHDICISHTGEDSD 389

Query: 373 ILKLLNIVYADLKTHATSANYMTSRAILSTTNEYVDQISERMIELFPSS----MSYDEAI 417
           +  L++ ++ +L  + +S +Y+ SRAILS  N+ VD I+ +MI  F        S+D A+
Sbjct: 390 LDTLIDCIFPNLNANMSSKDYIPSRAILSMRNDSVDMINMKMIRRFYGDEMVYHSFDCAV 444

[Close]
BLAST of Cucsa.311090 vs. TrEMBL
Match: C6JRR9_SORBI (Putative uncharacterized protein Sb0012s017630 OS=Sorghum bicolor GN=Sb0012s017630 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-08
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 409 FLNSLLPNEIATGQNAGKKVVQPRIPMSLANDKGYPFKFKRKNFPIRLCFAMTIKKAQ 467
           F  + +  EI  GQ+AGK+V  PRIP+  ++D+ +PF+FKRK FPIRL FAMT+ KA+
Sbjct: 482 FQKNTIDAEIVLGQHAGKRVFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTVNKAR 539


HSP 2 Score: 250.0 bits (637), Expect = 5.7e-63
Identity = 143/347 (41.21%), Postives = 195/347 (56.20%), Query Frame = 1 

Query: 191 TSGVAASITSGGRTTHSRFNIPLETHESSICNISKQSNNVELIKQTKVIIWDATPMAKKA 250
           TSG+AASI  GGRT HSRF IP++   +S+CN +KQS   EL+    +IIWD   M K+ 
Sbjct: 78  TSGIAASILPGGRTAHSRFKIPIKIAHNSMCNFTKQSGTAELLHMASLIIWDEATMTKRQ 137

Query: 251 AIEAVDRTFRDIMDNPEPLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVKLYIWNKME 310
           A+E +DR+ +DIM    P G KV+VFGGDFRQ+LP+V + TR Q T+ +L + Y+W  + 
Sbjct: 138 AVETLDRSLQDIMGCSLPFGEKVIVFGGDFRQLLPVVTRGTRAQITDATLQRSYLWENIR 197

Query: 311 KIQLTKNMRAQ--------------------KDDYICLPSNITVTGANEEDSILKLLNIV 370
           KI+L++NMRAQ                    +DDY+ LP  I +   N EDS+ +L+N V
Sbjct: 198 KIRLSRNMRAQSDPWFSEYLLRIGNGTENTIRDDYVRLPDEIVIAYGNSEDSVHELINHV 257

Query: 371 Y--ADLKTHATSANYMTSRAILSTTNEYVDQISERMIELFPSSM----SYDEAIDDTHNY 430
           +   D + +A+SA+YM++RAILST N+YVD+++  MI+ FP       S+D   DD HN 
Sbjct: 258 FHLLDDEKNASSASYMSTRAILSTKNDYVDKLNANMIDRFPGQAKVYHSFDSVDDDPHNS 317

Query: 431 YQEKFLNSLLPN-----EIATGQN------------------------------------ 467
           Y   +LNS+ PN     E+    N                                    
Sbjct: 318 YPLDYLNSITPNGLPPHELIVKINCPVILLRNLDPNNGLCNGTRLMVRAFQDNANDAEIV 377

[Close]
BLAST of Cucsa.311090 vs. TrEMBL
Match: K3YKW4_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_014884mg PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.4e-61
Identity = 138/313 (44.09%), Postives = 187/313 (59.74%), Query Frame = 1 

Query: 190  TTSGVAASITSGGRTTHSRFNIPLETHESSICNISKQSNNVELIKQTKVIIWDATPMAKK 249
            TTSG+AASI  GG T HS F IP++  +S++C+ +KQS   EL+++  +IIW+   M K+
Sbjct: 801  TTSGIAASIMPGGCTAHSWFKIPIKLDDSTMCSFTKQSGTTELLRRASLIIWNEVAMTKR 860

Query: 250  AAIEAVDRTFRDIMDNPEPLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVKLYIWNKM 309
             A+EA+DRT  D+MD P+P GG+V++FGGDFRQVLP+V   TR Q T+ +L+KLYIW  +
Sbjct: 861  QAVEALDRTLHDVMDCPQPFGGEVMLFGGDFRQVLPVVEHGTRAQITDTTLLKLYIWESI 920

Query: 310  EKIQLTKNMRAQK--------------------DDYICLPSNITVTGANEEDSILKLLNI 369
              I+LT+NMRAQ                     DDY+ LP +I +    +   I  L++ 
Sbjct: 921  WCIRLTQNMRAQSDSWFADYLLRIGNDTKKTIGDDYVQLPDDIFIDSLTDGIFIGMLIDH 980

Query: 370  VYADLKTHATSANYMTSRAILSTTNEYVDQISERMIELFPSSMSYDEAID---------D 429
            V+ +L  + TSANYM  RAILST NE++D ++  MI+ FP S       +         D
Sbjct: 981  VFPNLHVNCTSANYMRERAILSTRNEHMDAVNALMIDRFPGSKQLTIKKNFPVILLHNLD 1040

Query: 430  THN-------YYQEKFLNSLLPNEIATGQNAGKKVVQPRIPMSLANDKGYPFKFKRKNFP 467
             HN           +F  + +  EI  GQ+AGK+V  PRI MS + D   P KFKRK FP
Sbjct: 1041 PHNGLCNGTRLIVREFQKNSIDAEIVNGQHAGKRVFIPRITMSHSEDLPLP-KFKRKQFP 1100

[Close]
BLAST of Cucsa.311090 vs. TrEMBL
Match: K3YKW4_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_014884mg PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49
Identity = 95/180 (52.78%), Postives = 128/180 (71.11%), Query Frame = 1 

Query: 1   CSCMINGKCRFHYPRQFSSKTMQGKDAYPIYRKRDDGTQVSIRKKTFDNRWVVPYNPYLF 60
           C CM++G+C F YPRQFS+ T QGKD YPIYR R+DG +V IR +  DNRWVVPYNP L 
Sbjct: 391 CPCMVDGQCHFRYPRQFSAMTKQGKDTYPIYRGREDGQRVKIRGEELDNRWVVPYNPVLL 450

Query: 61  LRYNCHINVEICSGLKAVKYLYKYIYKGNDRAVVYISHDG-DNKGIDEIRDYQDARWVSA 120
           +RYN HINVEICS +K+V+YLYKYIYK +DRA   +   G ++  I+EI+ Y+DAR ++ 
Sbjct: 451 MRYNYHINVEICSSIKSVQYLYKYIYKDHDRASYTVDAKGNEHVVINEIKQYRDARMITT 510

Query: 121 QEALWRIYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLIYEDIQAHSKLNEDQKI 180
            EA++R++ FKL  ++PPV+ +Q++LP MH VSY    NLK ++       S L E  K+
Sbjct: 511 IEAVYRLFGFKLYSMWPPVLQMQVHLPGMHMVSYKSTDNLKDVVARAKSQRSMLTEYFKV 570


HSP 2 Score: 241.5 bits (615), Expect = 2.0e-60
Identity = 135/315 (42.86%), Postives = 189/315 (60.00%), Query Frame = 1 

Query: 191 TSGVAASITSGGRTTHSRFNIPLETHESSICNISKQSNNVELIKQTKVIIWDATPMAKKA 250
           TSGVAASI  GGRT +SRF IPL   +   C+ +KQS   +L++Q  +IIWD   MAK+ 
Sbjct: 313 TSGVAASIMPGGRTAYSRFKIPLTLEDGGCCSFTKQSGTAKLLQQASLIIWDEASMAKRQ 372

Query: 251 AIEAVDRTFRDIMDNPE-PLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVKLYIWNKM 310
           A+EA+D + RDIM   + P GGK VVFGGDFRQVL +V + +R Q  + SL + Y+W  M
Sbjct: 373 AMEALDNSLRDIMGRQDLPFGGKTVVFGGDFRQVLLVVRKGSRAQIVDASLWRSYLWESM 432

Query: 311 EKIQLTKNMRAQKDDYICLPSNITVTGANEE------DSILKLLNIVYADLKTHATSANY 370
             ++L +NMRAQ D +      + + G  EE        + +L+  ++ +L  + T+ +Y
Sbjct: 433 HHLKLVRNMRAQSDPWFA-EYLLRIGGGTEEVNGDGDKDLDRLIECIFPNLNANMTNKDY 492

Query: 371 MTSRAILSTTNEYVDQISERMIELFPSSM----SYDEAIDDTHNYYQEKFLNSLLPNEI- 430
           +TSRAILST N++VD I+ +MI +F        S+D AIDD HNYY  +FLN+L PN + 
Sbjct: 493 ITSRAILSTRNDWVDNINIKMIGMFQGGEMVYHSFDSAIDDPHNYYPSEFLNTLTPNGLP 552

Query: 431 --------------------ATGQ-------NAGKKVVQPRIPMSLANDKGYPFKFKRKN 467
                               A G        +AGK+V  PRIP+  ++D+ +PF+FKRK 
Sbjct: 553 PHLLKLKIGCPVILLRNIDPANGLCNGTRLVHAGKRVFLPRIPLCPSDDEMFPFQFKRKQ 612

[Close]
BLAST of Cucsa.311090 vs. TrEMBL
Match: K3XRZ7_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_004694mg PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 1.8e+00
Identity = 17/38 (44.74%), Postives = 28/38 (73.68%), Query Frame = 1 

Query: 126 IYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLI 164
           IY F L++ +PPV  LQL+LP+MH V+Y K   +++++
Sbjct: 1   IYGFDLSKNHPPVQQLQLHLPDMHMVTYHKRDKIERVV 38


HSP 2 Score: 233.8 bits (595), Expect = 4.3e-58
Identity = 146/379 (38.52%), Postives = 199/379 (52.51%), Query Frame = 1 

Query: 165  EDIQAHSKLNEDQKIAYDIILDKI-------VTTSGVAASITSGGRTTHSRFNIPLETHE 224
            ED++    LN++QK AY+ IL  +         TSGVAASI  GGRT HSRF IPL   +
Sbjct: 1026 EDMELPKHLNDEQKAAYNEILTAVDRKIALATATSGVAASIMPGGRTAHSRFKIPLRIDD 1085

Query: 225  SSICNISKQSNNVELIKQTKVIIWDATPMAKKAAIEAVDRTFRDIMDNPE-PLGGKVVVF 284
             +IC+ +KQS   +L++ T +IIWD   M K+ AIEA+D++ RDIMD P  P GGK +VF
Sbjct: 1086 GAICSFTKQSGTAKLLQATSLIIWDEASMTKRQAIEALDKSMRDIMDIPNLPFGGKTMVF 1145

Query: 285  GGDFRQVLPIVPQATRQQTTNESLVKLYIWNKMEKIQLTKNMRAQKDDY----------- 344
            GGDFRQVLP+V + TR Q  + SL +   WN M  ++L +NMRAQ D +           
Sbjct: 1146 GGDFRQVLPVVRKGTRSQIVDASLCRSEFWNCMRHMKLVRNMRAQNDPWFAEYLLRIGNG 1205

Query: 345  ---------ICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMTSRAILSTTNEY 404
                     I LP NI +    ++  + +L++ VY          NY+TSRAILST N+ 
Sbjct: 1206 TEETNDKGEIRLPKNICIPRTMDDSGLDRLIDSVYQMNSACLEDPNYITSRAILSTRNDC 1265

Query: 405  VDQISERMIELFPSS----MSYDEAIDDTHNYYQEKFLNSLLPN---------------- 464
            VD+I+ +MIE F        S+D   DD HNYY  +FLN+L PN                
Sbjct: 1266 VDRINLKMIERFQGEEMVYHSFDTVEDDPHNYYPPEFLNTLTPNGLPPHMLKLKVNCPII 1325

Query: 465  -----EIATGQNAG---------KKVVQPRIPMSL---------------ANDKGYPFKF 467
                 ++A G  +G         K  +   I +                 ++D+ +PF+F
Sbjct: 1326 LLRNIDLANGLCSGTRLVVRGFQKNAIDAEIVLGQHYGTRVFLPRIPLCPSDDEMFPFRF 1385

[Close]
BLAST of Cucsa.311090 vs. TAIR10
Match: AT3G51700.1 (AT3G51700.1 PIF1 helicase)

HSP 1 Score: 52.4 bits (124), Expect = 8.9e-07
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 

Query: 418 IATGQNAGKKVVQPRIPMSLANDKGYPFKFKRKNFPIRLCFAMTIKKAQ 467
           I TG N G+KV+ PRIP  L   K +P K +R+ FP++L FAMTI ++Q
Sbjct: 226 IITGNNHGEKVLIPRIPSDLREAK-FPIKMRRRQFPVKLAFAMTIDESQ 273

[Close]
BLAST of Cucsa.311090 vs. NCBI nr
Match: gi|778689029|ref|XP_004136446.2| (PREDICTED: ATP-dependent DNA helicase PIF1-like [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 7.7e-85
Identity = 184/266 (69.17%), Postives = 191/266 (71.80%), Query Frame = 1 

Query: 246 MAKKAAIEAVDRTFRDIMDNPEPLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVKLYI 305
           MAKKAAIEAVDRTFRDIMDN EPLGGKVVVFGGDFRQVLPIVPQATRQQTTNESL    I
Sbjct: 1   MAKKAAIEAVDRTFRDIMDNLEPLGGKVVVFGGDFRQVLPIVPQATRQQTTNESL----I 60

Query: 306 WNKMEKIQLTKNMRAQKDDYICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMT 365
            N  E         + +DDYICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMT
Sbjct: 61  GNGTEM--------STEDDYICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMT 120

Query: 366 SRAILSTTNEYVDQISERMIELFPSSMSYDEAIDDTHNYYQEKFLNSLLPNEI------- 425
           SRAILSTTNEYVDQISERMIELFPSSMSYDEAIDDTHNYYQEKFLNSLLPN +       
Sbjct: 121 SRAILSTTNEYVDQISERMIELFPSSMSYDEAIDDTHNYYQEKFLNSLLPNGVPPHKLFL 180

Query: 426 --------------ATGQNAGKKVVQPRIPMS------------------------LAND 467
                           G   G ++V  +   +                        LAND
Sbjct: 181 KKDCPVILLRNLDPGNGLCNGTRMVCRKFRKNIIYAEIATGQNAGKKVVQPRIPMSLAND 240

[Close]
BLAST of Cucsa.311090 vs. NCBI nr
Match: gi|253761696|ref|XP_002489223.1| (hypothetical protein SORBIDRAFT_0012s017630 [Sorghum bicolor])

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 172/438 (39.27%), Postives = 241/438 (55.02%), Query Frame = 1 

Query: 13  YPRQFSSKTMQGKDAYPIYRKRDDGTQVSIRKKTFDNRWVVPYNPYLFLRYNCHINVEIC 72
           YP Q + + +QGKD+YP+YR+RDDG +  +     DNRWVVPYNPYL   +NCHINVE C
Sbjct: 30  YPGQ-TPQDLQGKDSYPVYRRRDDGQKEKVHGHELDNRWVVPYNPYLLRLFNCHINVEAC 89

Query: 73  SGLKAVKYLYKYIYKGNDRAVVYISHDGDNK----GIDEIRD--YQDARWVSAQE---AL 132
             +KAVKYL+KYIYKG+DRA V +  + D K     +DEI+   +++A  + A E   AL
Sbjct: 90  GSIKAVKYLFKYIYKGHDRASVAV-READKKDTEGNVDEIKQEIFEEAS-IEANEDDMAL 149

Query: 133 WRIYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLIYEDIQAHSKLNEDQKIAYDI 192
               + +    Y  +++                   K  +Y  + A  +  +   +A  I
Sbjct: 150 SNTLNVEQRAAYDQIMSSVDTKDGGLFFVDGPGGTGKTYLYRALIAAIRSQKKIVVATAI 209

Query: 193 ILDKIVTTSGVAASITSGGRTTHSRFNIPLETHESSICNISKQSNNVELIKQTKVIIWDA 252
                   SGVAASI  GGRT HSRF IPL     + C  +KQS   +L++ + +IIWD 
Sbjct: 210 --------SGVAASIMPGGRTAHSRFKIPLTIDNGAFCTFTKQSGTAKLLRASSLIIWDE 269

Query: 253 TPMAKKAAIEAVDRTFRDIMDNPE-PLGGKVVVFGGDFRQVLPIVPQATRQQTTNESLVK 312
             M K+ +IEA+D + RDIMD  E P GGK VVFGGDFRQVLP+V + +R Q        
Sbjct: 270 ASMTKRQSIEALDNSLRDIMDRSELPFGGKTVVFGGDFRQVLPVVHRGSRAQ-------- 329

Query: 313 LYIWNKMEKIQLTKNMRAQK--------------------DDYICLPSNITVTGANEEDS 372
               + M  ++L  NMRA+                     DD ICLP +I ++   E+  
Sbjct: 330 ----DSMRHLKLVHNMRAKSDPWFAEYLLRVGGGSEEATVDDEICLPHDICISHTGEDSD 389

Query: 373 ILKLLNIVYADLKTHATSANYMTSRAILSTTNEYVDQISERMIELFPSS----MSYDEAI 417
           +  L++ ++ +L  + +S +Y+ SRAILS  N+ VD I+ +MI  F        S+D A+
Sbjct: 390 LDTLIDCIFPNLNANMSSKDYIPSRAILSMRNDSVDMINMKMIRRFYGDEMVYHSFDCAV 444

[Close]
BLAST of Cucsa.311090 vs. NCBI nr
Match: gi|253761696|ref|XP_002489223.1| (hypothetical protein SORBIDRAFT_0012s017630 [Sorghum bicolor])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 409 FLNSLLPNEIATGQNAGKKVVQPRIPMSLANDKGYPFKFKRKNFPIRLCFAMTIKKAQ 467
           F  + +  EI  GQ+AGK+V  PRIP+  ++D+ +PF+FKRK FPIRL FAMT+ KA+
Sbjct: 482 FQKNTIDAEIVLGQHAGKRVFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTVNKAR 539


HSP 2 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 141/281 (50.18%), Postives = 185/281 (65.84%), Query Frame = 1 

Query: 160  KKLIYEDIQAHSKLNEDQKIAYDIILDKIVTTSGVAASITSGGRTTHSRFNIPLETHESS 219
            K  +Y  + AH  L   +KIA          TSGVAA+I  GGRT HSRF IP++ +ESS
Sbjct: 895  KTFLYRALLAH--LRSRKKIAI------ATATSGVAAAIMPGGRTAHSRFKIPIDANESS 954

Query: 220  ICNISKQSNNVELIKQTKVIIWDATPMAKKAAIEAVDRTFRDIMDNPEPLGGKVVVFGGD 279
             CNISKQS    L++ TK+IIWD  PMAK+ AIE VD+ F+DIM N E  GGKVVVFGGD
Sbjct: 955  DCNISKQSGVANLLRTTKLIIWDEAPMAKRWAIENVDKLFKDIMGNDEHFGGKVVVFGGD 1014

Query: 280  FRQVLPIVPQATRQQTTNESLVKLYIWNKMEKIQLTKNMRAQKD----DY---------- 339
            FRQVLP+VP+ T  QT + SLVK  +W+KM K  L+KNMRAQKD    D+          
Sbjct: 1015 FRQVLPVVPRGTIHQTISASLVKSRLWHKMIKFSLSKNMRAQKDPEFGDFLLRVGNGEET 1074

Query: 340  ------ICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMTSRAILSTTNEYVDQ 399
                  I +P  + VT  NEEDS+ +L++ ++  L ++A S+ YMT+RAIL++ NE VD+
Sbjct: 1075 SDIEGNIIIPEEMVVTYDNEEDSMARLIHSIFPSLSSNAESSTYMTTRAILASKNEEVDK 1134

Query: 400  ISERMIELFPSS----MSYDEAIDDTHNYYQEKFLNSLLPN 417
            +++++I +FP       S+DEAIDDT+N Y+E FLNSL PN
Sbjct: 1135 LNDKLISMFPGDARTFQSFDEAIDDTNNNYEEDFLNSLTPN 1167

[Close]
BLAST of Cucsa.311090 vs. NCBI nr
Match: gi|848881561|ref|XP_012841137.1| (PREDICTED: uncharacterized protein LOC105961450 [Erythranthe guttata])

HSP 1 Score: 244.6 bits (623), Expect = 3.5e-61
Identity = 107/174 (61.49%), Postives = 135/174 (77.59%), Query Frame = 1 

Query: 2   SCMINGKCRFHYPRQFSSKTMQGKDAYPIYRKRDDGTQVSIRKKTFDNRWVVPYNPYLFL 61
           SCM++ KC++HYPR +   T+QGKD YPIY++R +G  V +R+   +N+WVVPYNPYL  
Sbjct: 470 SCMVDEKCKYHYPRPYCESTIQGKDGYPIYKRRRNGITVQVRRAHLNNQWVVPYNPYLLS 529

Query: 62  RYNCHINVEICSGLKAVKYLYKYIYKGNDRAVVYISHDGDNKGIDEIRDYQDARWVSAQE 121
           RYNCHINVEICSG+ AVKYLYKYIYKG+DR  V IS + +   IDEI++YQDARWVSAQE
Sbjct: 530 RYNCHINVEICSGVTAVKYLYKYIYKGHDRVAVNISQNDEENNIDEIKEYQDARWVSAQE 589

Query: 122 ALWRIYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLIYEDIQAHSKLNE 176
           A+WRIY+F LNEI PPVI+L L+LPN  CV+YW NQNL  ++  D  + + L E
Sbjct: 590 AIWRIYEFNLNEISPPVIDLHLHLPNQQCVTYWANQNLSNVLKWDHVSKTMLTE 643


HSP 2 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 409  FLNSLLPNEIATGQNAGKKVVQPRIPMSLANDKGYPFKFKRKNFPIRLCFAMTIKKAQ 467
            F ++++  EI  GQ+ GK V  PRIP+S A ++GYPFKFKRK FPIRLCFAMTI KAQ
Sbjct: 1205 FKSNVIDAEIVFGQHVGKHVFIPRIPLSPAENEGYPFKFKRKQFPIRLCFAMTINKAQ 1262


HSP 3 Score: 251.5 bits (641), Expect = 2.8e-63
Identity = 139/281 (49.47%), Postives = 183/281 (65.12%), Query Frame = 1 

Query: 160  KKLIYEDIQAHSKLNEDQKIAYDIILDKIVTTSGVAASITSGGRTTHSRFNIPLETHESS 219
            K  +Y  + AH  L   +KIA          TS VAA+I  GGRTTHSRF IP++ +ESS
Sbjct: 1101 KTFLYRALLAH--LRSRKKIAI------ATATSAVAAAIMPGGRTTHSRFKIPIDANESS 1160

Query: 220  ICNISKQSNNVELIKQTKVIIWDATPMAKKAAIEAVDRTFRDIMDNPEPLGGKVVVFGGD 279
             CNISKQS    L++  K+IIWD  PMAK+ AIE VD+ F+DIM N E  GGKVVVFGGD
Sbjct: 1161 DCNISKQSGVANLLRTAKLIIWDEAPMAKRWAIENVDKLFKDIMGNDEHFGGKVVVFGGD 1220

Query: 280  FRQVLPIVPQATRQQTTNESLVKLYIWNKMEKIQLTKNMRAQKD----DY---------- 339
            FRQVLP+VP+ T  QT + SLVK  +W+KM K  L+KNMRAQKD    D+          
Sbjct: 1221 FRQVLPVVPRGTIHQTISASLVKSRLWHKMIKFSLSKNMRAQKDPEFGDFLLRVGNGEET 1280

Query: 340  ------ICLPSNITVTGANEEDSILKLLNIVYADLKTHATSANYMTSRAILSTTNEYVDQ 399
                  I +P  + V   NEEDS+ +L++ ++  L ++A S+ YMT+RAIL++ NE VD+
Sbjct: 1281 SDIEGNIIIPEEMVVKYDNEEDSMARLIHSIFPSLSSNAESSTYMTTRAILASKNEEVDK 1340

Query: 400  ISERMIELFPSS----MSYDEAIDDTHNYYQEKFLNSLLPN 417
            +++++I +FP       S+DEAIDDT+N Y+E FLNSL PN
Sbjct: 1341 LNDKLISMFPGDARTFQSFDEAIDDTNNNYEEDFLNSLTPN 1373

[Close]
BLAST of Cucsa.311090 vs. NCBI nr
Match: gi|848881324|ref|XP_012841028.1| (PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata])

HSP 1 Score: 238.4 bits (607), Expect = 2.5e-59
Identity = 104/174 (59.77%), Postives = 133/174 (76.44%), Query Frame = 1 

Query: 2   SCMINGKCRFHYPRQFSSKTMQGKDAYPIYRKRDDGTQVSIRKKTFDNRWVVPYNPYLFL 61
           SCM++ KC++HYPR +   T+QGKD YPIY++R +G  V +R+   +N+WVVPYNPYL  
Sbjct: 676 SCMVDEKCKYHYPRPYCESTIQGKDGYPIYKRRRNGITVQVRRAHLNNQWVVPYNPYLLS 735

Query: 62  RYNCHINVEICSGLKAVKYLYKYIYKGNDRAVVYISHDGDNKGIDEIRDYQDARWVSAQE 121
           RYNCHINVEIC G+ AVKYLYKY YKG+DR  V +S + +   IDEI++YQDARWVSAQE
Sbjct: 736 RYNCHINVEICYGVTAVKYLYKYNYKGHDRVAVNMSQNDEENNIDEIKEYQDARWVSAQE 795

Query: 122 ALWRIYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLIYEDIQAHSKLNE 176
           A+WRIY+F LNEI PPVI+L L+LPN  CV+YW NQNL  ++  D  + + L E
Sbjct: 796 AIWRIYEFNLNEISPPVIDLHLHLPNQQCVTYWANQNLSNVLKWDHVSKTMLTE 849


HSP 2 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 409  FLNSLLPNEIATGQNAGKKVVQPRIPMSLANDKGYPFKFKRKNFPIRLCFAMTIKKAQ 467
            F ++++  EI  GQ+ GK V  PRIP+S A ++GYPFKFKRK FPIRLCFAMTI KAQ
Sbjct: 1411 FKSNVIDAEIVFGQHVGKHVFIPRIPLSPAENEGYPFKFKRKQFPIRLCFAMTINKAQ 1468


HSP 3 Score: 245.4 bits (625), Expect = 2.0e-61
Identity = 107/174 (61.49%), Postives = 135/174 (77.59%), Query Frame = 1 

Query: 2   SCMINGKCRFHYPRQFSSKTMQGKDAYPIYRKRDDGTQVSIRKKTFDNRWVVPYNPYLFL 61
           SCM++GKC++HYPR +   T+QGKD YPIY++  +G    +RK   DN+WVVPYNPYL  
Sbjct: 261 SCMVDGKCKYHYPRPYCESTIQGKDGYPIYKRTKNGPAFEVRKAKLDNQWVVPYNPYLLS 320

Query: 62  RYNCHINVEICSGLKAVKYLYKYIYKGNDRAVVYISHDGDNKGIDEIRDYQDARWVSAQE 121
           RYNCHINVEICSG+ AVKYLYKYIYKG+DR  V+ISH+ +   IDEI+ +QDARWVSAQE
Sbjct: 321 RYNCHINVEICSGVTAVKYLYKYIYKGHDRVAVHISHNDEEMVIDEIKQFQDARWVSAQE 380

Query: 122 ALWRIYDFKLNEIYPPVINLQLYLPNMHCVSYWKNQNLKKLIYEDIQAHSKLNE 176
           A+WRI++F LNEIYP VINL L+LPN   V+YW NQNL+ ++  D  + + L E
Sbjct: 381 AMWRIFEFNLNEIYPAVINLPLHLPNQQSVTYWTNQNLENILGWDQTSKTMLTE 434

The following BLAST results are available for this feature:
BLAST of Cucsa.311090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRM3_YEAST5.4e-0621.51ATP-dependent DNA helicase RRM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 ... [more]
BLAST of Cucsa.311090 vs. TrEMBL
Match NameE-valueIdentityDescription
C6JRR9_SORBI8.0e-7339.27Putative uncharacterized protein Sb0012s017630 OS=Sorghum bicolor GN=Sb0012s0176... [more]
C6JRR9_SORBI4.0e-0853.45Putative uncharacterized protein Sb0012s017630 OS=Sorghum bicolor GN=Sb0012s0176... [more]
K3YKW4_SETIT5.4e-6144.09Uncharacterized protein OS=Setaria italica GN=SETIT_014884mg PE=4 SV=1[more]
K3YKW4_SETIT2.1e-4952.78Uncharacterized protein OS=Setaria italica GN=SETIT_014884mg PE=4 SV=1[more]
K3XRZ7_SETIT1.8e+0044.74Uncharacterized protein OS=Setaria italica GN=SETIT_004694mg PE=4 SV=1[more]
BLAST of Cucsa.311090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G51700.18.9e-0751.02 PIF1 helicase[more]
BLAST of Cucsa.311090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778689029|ref|XP_004136446.2|7.7e-8569.17PREDICTED: ATP-dependent DNA helicase PIF1-like [Cucumis sativus][more]
gi|253761696|ref|XP_002489223.1|1.1e-7239.27hypothetical protein SORBIDRAFT_0012s017630 [Sorghum bicolor][more]
gi|253761696|ref|XP_002489223.1|5.8e-0853.45hypothetical protein SORBIDRAFT_0012s017630 [Sorghum bicolor][more]
gi|848881561|ref|XP_012841137.1|3.5e-6161.49PREDICTED: uncharacterized protein LOC105961450 [Erythranthe guttata][more]
gi|848881324|ref|XP_012841028.1|2.5e-5959.77PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
cellular_component GO:0005657 replication fork
molecular_function GO:0003678 DNA helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.311090.1Cucsa.311090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010285DNA helicase Pif1-likePFAMPF05970PIF1coord: 189..323
score: 2.0E-46coord: 324..419
score: 2.
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 271..390
score: 4.4E-13coord: 445..466
score: 4.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 268..466
score: 3.29
NoneNo IPR availablePANTHERPTHR10492UNCHARACTERIZEDcoord: 1..466
score: 2.3E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.311090Cucumber (Chinese Long) v3cgycucB485
Cucsa.311090Cucumber (Chinese Long) v3cgycucB487
Cucsa.311090Watermelon (97103) v2cgywmbB543
Cucsa.311090Watermelon (97103) v2cgywmbB546
Cucsa.311090Wax gourdcgywgoB632
Cucsa.311090Wax gourdcgywgoB628
Cucsa.311090Cucumber (Gy14) v1cgycgyB102
Cucsa.311090Cucurbita maxima (Rimu)cgycmaB0854
Cucsa.311090Cucurbita maxima (Rimu)cgycmaB0863
Cucsa.311090Cucurbita maxima (Rimu)cgycmaB0876
Cucsa.311090Cucurbita moschata (Rifu)cgycmoB0852
Cucsa.311090Cucurbita moschata (Rifu)cgycmoB0858
Cucsa.311090Cucurbita moschata (Rifu)cgycmoB0862
Cucsa.311090Cucurbita moschata (Rifu)cgycmoB0873
Cucsa.311090Wild cucumber (PI 183967)cgycpiB469
Cucsa.311090Wild cucumber (PI 183967)cgycpiB473
Cucsa.311090Cucumber (Chinese Long) v2cgycuB450
Cucsa.311090Cucumber (Chinese Long) v2cgycuB446
Cucsa.311090Melon (DHL92) v3.5.1cgymeB513
Cucsa.311090Melon (DHL92) v3.5.1cgymeB517
Cucsa.311090Watermelon (Charleston Gray)cgywcgB541
Cucsa.311090Watermelon (Charleston Gray)cgywcgB545
Cucsa.311090Watermelon (97103) v1cgywmB566
Cucsa.311090Watermelon (97103) v1cgywmB570
Cucsa.311090Cucurbita pepo (Zucchini)cgycpeB0814
Cucsa.311090Cucurbita pepo (Zucchini)cgycpeB0824
Cucsa.311090Cucurbita pepo (Zucchini)cgycpeB0828
Cucsa.311090Cucurbita pepo (Zucchini)cgycpeB0832
Cucsa.311090Bottle gourd (USVL1VR-Ls)cgylsiB503
Cucsa.311090Bottle gourd (USVL1VR-Ls)cgylsiB513
Cucsa.311090Melon (DHL92) v3.6.1cgymedB512
Cucsa.311090Melon (DHL92) v3.6.1cgymedB517
Cucsa.311090Silver-seed gourdcarcgyB0068
Cucsa.311090Silver-seed gourdcarcgyB0630
Cucsa.311090Silver-seed gourdcarcgyB0712
Cucsa.311090Silver-seed gourdcarcgyB1097