Cucsa.300790 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGACAACGACAACAACAACAATAATAATGAAAAAAGGAAGTGTCAATTTGAAACTAGAAGTTGAGAGTTAAAATTGTGTTAGATAAGTGTAGCATTGAAAGTATTAAAGGCATTGACGAAGGGACCATATGTATTTTTACTTCATGTGGTCCTCCATTTATGTGAAAAGAAGATAGAAAAAAGGTTAGTTTTGTAATATGAAAACTATTTTAGGTTTAAAAAATAGTTTTAGGTTAAAAAATAGCATTGTTTAATTAATAATAAATATCAAATAGCAAAGACTAAAAATCAGTATTATTGACTATCAAATAACAAAAACTTTGCGCCGTATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCAGTTATTTAAGAGCTAAAAAAGCTCTTTCCCAACCAAAAAAGGCATAATGAACTACTAGAATACGACCCAAGCAAGCCAACCTATTGTCCACGAATGCAGTTCTTTCATCTCTTTCGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTAGCTTTTGAAGACACATAAGTTTTGTAGTTTAAGCAAAAGCTTAGTTCATTCACTCATTAATCTCAAAAATAATAAAAGATTCTCCATTCTCAATTCAATAAGGAATAAAAAGAAGAAAAGACGATAAAGGAGCTAGGTAATAAAAAGAAGAGAAGACGAGTCAAGAGGTTTTGATGATTGTAAAGACTATTACAAAGACCTGCAGAAACCTAAAAAGTACCAATGCTAAGAGAAAGAAGAGTATAGAATGAACGAGTCAATTCAATATGAACCTAGAAAAGTAGGCGTTTAAGATGAACCGAAAATCTTCAACAATATCCATGGAGGGCATATCTGTGGAGAGGTAAGACGGAGGGTAGAGGTGGTGCTTAAGTTGCCTGGGATGAGGTTTGTCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGCGATGGATCTTCTTGGAATATAGCAAGCACGTTAAAGATCTTATGGTTGCTTCTAGTTAAATCTTGTAGTTTGTGGGTTGCTTGGGTGGAAGCTTATATCCTTAAAGGGAGATCGTTGTGGGAGATCGATGTTGGGGTGGGTCGATCTTGGTGTTTTAGGGCAATCTTGCGTAAGCGGGATATCCTTAAAGCTCATGTTAAGATGGAGGTGGGCAATGGTAAGAAGTGTAGAGTGTGGTTGGATCCAAGGATTCAGGGTGGACCGATTATCCAGCAGTTTGGGGAGAGGGTGATTTATGATGCAGATAGTCGGCGGGATGCGAGGCTTGTGGATTTCATGGGTCGGGATGGAGATTGGAGGTGGTCGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGAATTCAGGGAGTGAGGCCGAGTCCGAGTGTTGAGGATATGTGGGTCCGGGTGCCAGGTAGTCATGAGAGTTTTTCGATCGTCAGTGCGTGCGAGGCTATTCGTCCTCATAGTAGTAGGGTTGGCTGGTCGGGTTTACTGTGGGGTGGGGGAAaTATTCCTAAGCACTCCTTCTATACTTGGTTGGCCATCAAGGATAGGTTGGGTACTAGAGATAGATTAAGTCGGTGGGATAGTTCGATTCCTTTATCGTGTATTCTTTGTGGACGGAACTATGAGTCTCGTGACCATTTGTTTTTtCCTTGTCCTTTTGGGTGGGAGATTTGGTCTAGAATCCTTTTGTTTATGTCATCTTCTCACAGGATACGGTATTGGGGGGTTGAGTTATCTTAGATTTGCAATTAGGGTATTGGGAAGGGTGTGAGGAGAAAATTGTGGCGCCTTCTCTGGTGTGCTACAATTTATTTCATTTGGCAGGAGCGAAATCTTCGTCTTCATGGAGGTGCTGTTTGGGAGCCTATGGTTATTTTCCAGCTCATTCGGTCGTGTATTAAAGTCGTGCTGCTTCTTGGTCCAATTGAGTTCATG atgacgacaacgacaacaacaacaataataaTGAAAAAAGGAAttgcctgggatgaggtttgtcttccttttgatgaaggaggtcttgctattcgcgatggatcttcttggaatatagcaagcacgttaaagatcttatggttgcttctagttaaatcttgtagtttgtgggttgcttgggtggaagcttatatccttaaagggagatcgttgtgggagatcgatgttggggtgggtcgatcttggtgttttagggcaatcttgcgtaagcgggatatccttaaagctcatgttaagatggaggtgggcaatggtaagaagtgtagagtgtggttggatccaaggattcagggtggaccgattatccagcagtttggggagagggtgatttatgatgcagatagtcggcgggatgcgaggcttgtggatttcatgggtcgggatggagattggaggtggtcgcttgtttctttggatttgatggacatttgggatagaattcagggagtgaggccgagtccgagtgttgaggatatgtgggtccgggtgccaggtagtcatgagagtttttcgatcgtcagtgcgtgcgaggctattcgtcctcatagtagtagggttggctggtcgggtttactgtggggtgggggaaatattcctaagcactccttctatacttggttggccatcaaggataggttgggtactagagatagattaagtcggtgggatagttcgattcctttatcgtgtattctttgtggacggaactatgagtctcgtgaccatttgttttttccttgtccttttgggtgggagatttggtctagaatccttttgtttatgtcatcttctcacaggatacggtattgggggggtgtgaggagaaaattgtggcgccttctctggtgtgctacaatttatttcatttggcaggagcgaaatcttcgtcttcatggaggtgctgtttgggagcctatggttattttccagctcattcggtCGTGTATTAAAGTCGTGCTGCTTCTTGGTCCAATTGAGTTCATG ATGACGACAACGACAACAACAACAATAATAATGAAAAAAGGAATTGCCTGGGATGAGGTTTGTCTTCCTTTTGATGAAGGAGGTCTTGCTATTCGCGATGGATCTTCTTGGAATATAGCAAGCACGTTAAAGATCTTATGGTTGCTTCTAGTTAAATCTTGTAGTTTGTGGGTTGCTTGGGTGGAAGCTTATATCCTTAAAGGGAGATCGTTGTGGGAGATCGATGTTGGGGTGGGTCGATCTTGGTGTTTTAGGGCAATCTTGCGTAAGCGGGATATCCTTAAAGCTCATGTTAAGATGGAGGTGGGCAATGGTAAGAAGTGTAGAGTGTGGTTGGATCCAAGGATTCAGGGTGGACCGATTATCCAGCAGTTTGGGGAGAGGGTGATTTATGATGCAGATAGTCGGCGGGATGCGAGGCTTGTGGATTTCATGGGTCGGGATGGAGATTGGAGGTGGTCGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGAATTCAGGGAGTGAGGCCGAGTCCGAGTGTTGAGGATATGTGGGTCCGGGTGCCAGGTAGTCATGAGAGTTTTTCGATCGTCAGTGCGTGCGAGGCTATTCGTCCTCATAGTAGTAGGGTTGGCTGGTCGGGTTTACTGTGGGGTGGGGGAAaTATTCCTAAGCACTCCTTCTATACTTGGTTGGCCATCAAGGATAGGTTGGGTACTAGAGATAGATTAAGTCGGTGGGATAGTTCGATTCCTTTATCGTGTATTCTTTGTGGACGGAACTATGAGTCTCGTGACCATTTGTTTTTtCCTTGTCCTTTTGGGTGGGAGATTTGGTCTAGAATCCTTTTGTTTATGTCATCTTCTCACAGGATACGGTATTGGGGGGGTGTGAGGAGAAAATTGTGGCGCCTTCTCTGGTGTGCTACAATTTATTTCATTTGGCAGGAGCGAAATCTTCGTCTTCATGGAGGTGCTGTTTGGGAGCCTATGGTTATTTTCCAGCTCATTCGGTCGTGTATTAAAGTCGTGCTGCTTCTTGGTCCAATTGAGTTCATG MTTTTTTTIIMKKGIAWDEVCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSCSLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGRNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWGGVRRKLWRLLWCATIYFIWQERNLRLHGGAVWEPMVIFQLIRSCIKVVLLLGPIEFM
BLAST of Cucsa.300790 vs. TrEMBL
Match: A0A068F615_BRANA (Uncharacterized protein OS=Brassica napus PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46 Identity = 111/345 (32.17%), Postives = 175/345 (50.72%), Query Frame = 1
BLAST of Cucsa.300790 vs. TrEMBL
Match: Q9FL83_ARATH (Non-LTR retroelement reverse transcriptase-like protein OS=Arabidopsis thaliana PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 4.3e-39 Identity = 104/327 (31.80%), Postives = 157/327 (48.01%), Query Frame = 1
BLAST of Cucsa.300790 vs. TrEMBL
Match: M4DQ66_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 7.3e-39 Identity = 99/338 (29.29%), Postives = 150/338 (44.38%), Query Frame = 1
BLAST of Cucsa.300790 vs. TrEMBL
Match: A0A087GG31_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G055000 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38 Identity = 98/326 (30.06%), Postives = 164/326 (50.31%), Query Frame = 1
BLAST of Cucsa.300790 vs. TrEMBL
Match: Q9FYJ4_ARATH (F17F8.5 OS=Arabidopsis thaliana PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38 Identity = 107/337 (31.75%), Postives = 163/337 (48.37%), Query Frame = 1
BLAST of Cucsa.300790 vs. TAIR10
Match: AT1G60720.1 (AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 119.0 bits (297), Expect = 5.8e-27 Identity = 87/274 (31.75%), Postives = 134/274 (48.91%), Query Frame = 1
BLAST of Cucsa.300790 vs. TAIR10
Match: AT1G43730.1 (AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 106.3 bits (264), Expect = 3.9e-23 Identity = 79/266 (29.70%), Postives = 117/266 (43.98%), Query Frame = 1
BLAST of Cucsa.300790 vs. TAIR10
Match: AT5G16486.1 (AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 105.1 bits (261), Expect = 8.6e-23 Identity = 68/204 (33.33%), Postives = 98/204 (48.04%), Query Frame = 1
BLAST of Cucsa.300790 vs. TAIR10
Match: AT4G04650.1 (AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 102.4 bits (254), Expect = 5.6e-22 Identity = 75/252 (29.76%), Postives = 110/252 (43.65%), Query Frame = 1
BLAST of Cucsa.300790 vs. TAIR10
Match: AT2G02520.1 (AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 94.4 bits (233), Expect = 1.5e-19 Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = 1
BLAST of Cucsa.300790 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]) HSP 1 Score: 404.1 bits (1037), Expect = 2.5e-109 Identity = 196/326 (60.12%), Postives = 228/326 (69.94%), Query Frame = 1
BLAST of Cucsa.300790 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 388.7 bits (997), Expect = 1.1e-104 Identity = 184/277 (66.43%), Postives = 212/277 (76.53%), Query Frame = 1
BLAST of Cucsa.300790 vs. NCBI nr
Match: gi|659116542|ref|XP_008458124.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70 Identity = 127/192 (66.15%), Postives = 153/192 (79.69%), Query Frame = 1
BLAST of Cucsa.300790 vs. NCBI nr
Match: gi|685297015|ref|XP_009139329.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]) HSP 1 Score: 201.4 bits (511), Expect = 2.5e-48 Identity = 118/346 (34.10%), Postives = 176/346 (50.87%), Query Frame = 1
BLAST of Cucsa.300790 vs. NCBI nr
Match: gi|923628714|ref|XP_013749866.1| (PREDICTED: uncharacterized protein LOC106452330 isoform X1 [Brassica napus]) HSP 1 Score: 194.9 bits (494), Expect = 2.3e-46 Identity = 111/345 (32.17%), Postives = 175/345 (50.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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