Cucsa.300640 (gene) Cucumber (Gy14) v1

NameCucsa.300640
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02931 : 182111 .. 182818 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCCCTCCTTTCTCTTCTTCTTCTTCTTGTTCCATTCCTTTTCTGCAAAACTGGAGAGGCACCACCCTTCTTCCTCCGCACCGTCGTGGCCTTCCGACGACCGACGACCCAATTTCAATCACCAGTTTGATCCCTATGTTCAATACCCCAATCACCATCCCGGGCCCCCTTTTGTCCACCCCAATTATCCCCCTCAGTACGCTCCCCATCCCCCCCACCCTCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTACGCAGCACCCGCCTCCTTTCCAGCCTCAGCACCACCCCCAGCCCCAGCCCCCGCCCCCGCCCCCGCCACCTCACCAGCACCCCTACCAGCATCAGCATCAGCACCAGCACCAGCACAATAACTGGAACCATCCGGAGTTCCACAATCATCCCCCGGACTACCGTCCCCAGCCGCACTTTAACGGCGAGATGACTGAGGGGTTCGGAAACGGGGGTTTGAGGCCCAATTGTGGGAATCCAAATCCAATTTTAGGGCGTAAAAGGCCTAGAAACTATTCCAACAGAACTGTTCCTGGAGGTATTTCATTTTTTTAA

mRNA sequence

gccccctcctttctcttcttcttcttcttgttccattccttttcTCACCCGCCTCCTTTccagcctcagcaccacccccagccccagcccccgcccccgcccccgccACCTCACCAGCACCCCTACCAGCATCAGCATCAGCACCAGCACCAGCACAATAACTGGAACCATCCGGAGTTCCACAATCATCCCCCGGACTACCGTCCCCAGCCGCACTTTAACGGCGAGATGACTGAGGGGTTCGGAAACGGGGGTTTGAGGCCCAATTGTGGGAATCCAAATCCAATTTTAGGGCGTAAAAGGCCTAGAAACTATTCCAACAGAACTGTTCCTGGAGGTATTTCATTTTTTTAA

Coding sequence (CDS)

GCCCCCTCCTTTCTCTTCTTCTTCTTCTTGTTCCATTCCTTTTCTCACCCGCCTCCTTTCCAGCCTCAGCACCACCCCCAGCCCCAGCCCCCGCCCCCGCCCCCGCCACCTCACCAGCACCCCTACCAGCATCAGCATCAGCACCAGCACCAGCACAATAACTGGAACCATCCGGAGTTCCACAATCATCCCCCGGACTACCGTCCCCAGCCGCACTTTAACGGCGAGATGACTGAGGGGTTCGGAAACGGGGGTTTGAGGCCCAATTGTGGGAATCCAAATCCAATTTTAGGGCGTAAAAGGCCTAGAAACTATTCCAACAGAACTGTTCCTGGAGGTATTTCATTTTTTTAA

Protein sequence

APSFLFFFFLFHSFSHPPPFQPQHHPQPQPPPPPPPPHQHPYQHQHQHQHQHNNWNHPEFHNHPPDYRPQPHFNGEMTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPGGISFF*
BLAST of Cucsa.300640 vs. Swiss-Prot
Match: RBM33_HUMAN (RNA-binding protein 33 OS=Homo sapiens GN=RBM33 PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-10
Identity = 39/102 (38.24%), Postives = 44/102 (43.14%), Query Frame = 1

Query: 16  HPPPFQPQHHPQPQPPPPPPPPHQHPYQHQHQHQHQHNNWNHPE-FHNHPPDYRP----- 75
           H PP QP H P PQ  PPP  P QHP QHQH H H H +   P       P +RP     
Sbjct: 605 HQPPHQPPHQPPPQHQPPPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTA 664

Query: 76  QPHFNGEMTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVP 112
           QP  +    +     GLR N  + N     KRP      T P
Sbjct: 665 QPQASSSRMQCPQRQGLRHNTTSQNV---SKRPMQQMQPTAP 703

BLAST of Cucsa.300640 vs. Swiss-Prot
Match: Y4007_DICDI (Putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274007 OS=Dictyostelium discoideum GN=DDB_G0272797 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 28/54 (51.85%), Postives = 32/54 (59.26%), Query Frame = 1

Query: 21  QPQHHPQPQPPPP---PPPPHQHPYQHQHQHQHQHNNWNHPEFHNHPPDYRPQP 72
           Q Q   Q QPP      PP HQH +QHQHQHQHQH +   P+ H H P  +PQP
Sbjct: 596 QQQQQHQYQPPQQYNHQPPQHQHQHQHQHQHQHQHQHQPQPQ-HQHQPQPQPQP 648

BLAST of Cucsa.300640 vs. TrEMBL
Match: A0A0A0LBT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536140 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 77  MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 113
           MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG
Sbjct: 1   MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 36

BLAST of Cucsa.300640 vs. TrEMBL
Match: W9IYP7_FUSOX (Uncharacterized protein OS=Fusarium oxysporum FOSC 3-a GN=FOYG_02915 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-11
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 1

Query: 14  FSHP-PPFQPQH----HPQPQPPPPPPPPHQHPYQHQHQHQHQHNNWNHPEFHNHPPDYR 73
           F H  PP  PQH     P  +  PPPPPPHQH +QHQHQHQHQ + + +   H  P    
Sbjct: 407 FKHDTPPQVPQHTVSSSPHKEGGPPPPPPHQHQHQHQHQHQHQQHQYQYQHQHTAP---- 466

Query: 74  PQPHF-NGEMTEGFGNG 85
           PQP F N +MT+G  NG
Sbjct: 467 PQPAFINPDMTKGTNNG 479

BLAST of Cucsa.300640 vs. TrEMBL
Match: G1TY18_RABIT (Uncharacterized protein OS=Oryctolagus cuniculus GN=RBM33 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 42/107 (39.25%), Postives = 49/107 (45.79%), Query Frame = 1

Query: 16  HPPPFQPQHHPQPQPPPPPPPPHQHPYQHQHQHQHQHNN-----------WNHPEFHNHP 75
           H PP QPQH P  QPP  PPP HQ P QHQ QHQ QH++            + P+F  H 
Sbjct: 623 HQPPLQPQHQPPHQPPHQPPPQHQPPPQHQPQHQPQHHHHLSVPPPPLMPMSQPQFRPHV 682

Query: 76  PDYRPQPHFNGEMTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVP 112
              +PQP  N    +     GLR N  + N     KRP      T P
Sbjct: 683 QTAQPQP--NSSRMQCPQRQGLRHNTASQNV---TKRPMQQMQPTAP 724

BLAST of Cucsa.300640 vs. TrEMBL
Match: G1TY18_RABIT (Uncharacterized protein OS=Oryctolagus cuniculus GN=RBM33 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-03
Identity = 36/115 (31.30%), Postives = 40/115 (34.78%), Query Frame = 1

Query: 15  SHPPPFQPQHHPQPQPPPPPPPPHQH---------------PYQHQH-----QHQHQHNN 74
           +H P   P   PQP PPPPPPPP Q                P QH H     Q  H    
Sbjct: 315 THSPRLIPPPQPQPPPPPPPPPPQQQPIRSLFQQQQLQPLLPLQHPHHPSPPQGMHMPPQ 374

Query: 75  WNHPEFHNHPPDYRPQ--------PHFNGEMTEGFGNGGLRPNCGNPNPILGRKR 102
              P     PP   PQ        PHF G +        L P    P P +G +R
Sbjct: 375 IETPRIMMTPPPVTPQQPKNIHINPHFKGTVVTPV-QVPLLPVPSQPRPAVGPQR 428


HSP 2 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 1

Query: 13  SFSHPPPFQPQHHPQPQPPPPPPPPHQHPYQHQHQHQHQHNNWNHPEFHNHPP 66
           + SH  P  PQHH  P PPP P   HQHP+QHQHQHQHQH   +H +   HPP
Sbjct: 213 AMSHASPHAPQHHSLP-PPPQPQHQHQHPHQHQHQHQHQHQ--HHHQQPQHPP 262

BLAST of Cucsa.300640 vs. TrEMBL
Match: A0A151GTB6_9HYPO (Uncharacterized protein OS=Drechmeria coniospora GN=DCS_01503 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 35/93 (37.63%), Postives = 47/93 (50.54%), Query Frame = 1

Query: 13  SFSHPPPFQPQHHPQPQPPPPPPPPHQHPYQHQHQHQHQHNNWN-HPEFHNHPP------ 72
           ++  P P Q Q   Q Q  PPPPP HQH +QHQHQHQHQH + + H   H H P      
Sbjct: 28  TYIQPHPQQQQQQQQTQHQPPPPPQHQHQHQHQHQHQHQHQHQHQHQHQHQHSPPAGQAH 87

Query: 73  --DYRPQPHFNGEMTEGFGNGGLRPNCGNPNPI 97
              +   PH    ++   G+  L P+ G+ + I
Sbjct: 88  NAQFNTMPH-RESVSPVVGHQTLPPSAGSASKI 119

BLAST of Cucsa.300640 vs. NCBI nr
Match: gi|778681545|ref|XP_011651537.1| (PREDICTED: flowering time control protein FCA [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 77  MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 113
           MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG
Sbjct: 1   MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 36

BLAST of Cucsa.300640 vs. NCBI nr
Match: gi|700202999|gb|KGN58132.1| (hypothetical protein Csa_3G536140 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query: 77  MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 113
           MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG
Sbjct: 1   MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 36

BLAST of Cucsa.300640 vs. NCBI nr
Match: gi|594621682|ref|XP_007165522.1| (PREDICTED: RNA-binding protein 33 [Balaenoptera acutorostrata scammoni])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 47/113 (41.59%), Postives = 54/113 (47.79%), Query Frame = 1

Query: 17  PPPFQPQHHPQP--------QPPPPPPPPHQHPYQHQHQHQHQHNNWN----------HP 76
           PPP QPQ  P P        QPPPPPPPPH H +QHQHQHQHQH++ +           P
Sbjct: 537 PPPPQPQQQPPPPLQPPSPHQPPPPPPPPHPHQHQHQHQHQHQHHHLSVPPPPLMPVAQP 596

Query: 77  EFHNHPPDYRPQPHFNGEMTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVP 112
           +F  H     PQP  N   T+     GLR N  + N     KRP      T P
Sbjct: 597 QFRPHMQTGPPQP--NSSRTQCPQRQGLRHNTTSQNV---TKRPMQQMQPTAP 644

BLAST of Cucsa.300640 vs. NCBI nr
Match: gi|594621682|ref|XP_007165522.1| (PREDICTED: RNA-binding protein 33 [Balaenoptera acutorostrata scammoni])

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-01
Identity = 37/116 (31.90%), Postives = 41/116 (35.34%), Query Frame = 1

Query: 15  SHPPPFQPQHHPQPQPPPPPPPPHQH----------------PYQHQH-----QHQHQHN 74
           +H P   P   PQPQPPPPPPPP Q                 P QH H     Q  H   
Sbjct: 258 AHSPRLIPP--PQPQPPPPPPPPPQQQPIRSLFQQQQLQPLLPLQHPHHPSPPQGMHLPP 317

Query: 75  NWNHPEFHNHPPDYRPQ--------PHFNGEMTEGFGNGGLRPNCGNPNPILGRKR 102
               P     PP   PQ        PHF G +        L P    P P +G +R
Sbjct: 318 QIEAPRAMMTPPPVTPQQPKNIHINPHFKGAVVTPV-QVPLLPVPSQPRPAVGPQR 370


HSP 2 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1

Query: 77  MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 113
           MTEGFGNGGLRPNCGNPN  LGRKRPRNYSNRTVPG
Sbjct: 1   MTEGFGNGGLRPNCGNPNANLGRKRPRNYSNRTVPG 36

BLAST of Cucsa.300640 vs. NCBI nr
Match: gi|659093311|ref|XP_008447477.1| (PREDICTED: flowering time control protein FCA isoform X2 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1

Query: 77  MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPG 113
           MTEGFGNGGLRPNCGNPN  LGRKRPRNYSNRTVPG
Sbjct: 1   MTEGFGNGGLRPNCGNPNANLGRKRPRNYSNRTVPG 36

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RBM33_HUMAN4.6e-1038.24RNA-binding protein 33 OS=Homo sapiens GN=RBM33 PE=1 SV=3[more]
Y4007_DICDI1.9e-0851.85Putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274... [more]
Match NameE-valueIdentityDescription
A0A0A0LBT6_CUCSA1.8e-13100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G536140 PE=4 SV=1[more]
W9IYP7_FUSOX8.4e-1149.35Uncharacterized protein OS=Fusarium oxysporum FOSC 3-a GN=FOYG_02915 PE=4 SV=1[more]
G1TY18_RABIT7.1e-1039.25Uncharacterized protein OS=Oryctolagus cuniculus GN=RBM33 PE=4 SV=1[more]
G1TY18_RABIT2.9e-0331.30Uncharacterized protein OS=Oryctolagus cuniculus GN=RBM33 PE=4 SV=1[more]
A0A151GTB6_9HYPO1.0e-0837.63Uncharacterized protein OS=Drechmeria coniospora GN=DCS_01503 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778681545|ref|XP_011651537.1|2.6e-13100.00PREDICTED: flowering time control protein FCA [Cucumis sativus][more]
gi|700202999|gb|KGN58132.1|2.6e-13100.00hypothetical protein Csa_3G536140 [Cucumis sativus][more]
gi|594621682|ref|XP_007165522.1|1.7e-1241.59PREDICTED: RNA-binding protein 33 [Balaenoptera acutorostrata scammoni][more]
gi|594621682|ref|XP_007165522.1|1.0e-0131.90PREDICTED: RNA-binding protein 33 [Balaenoptera acutorostrata scammoni][more]
gi|659093311|ref|XP_008447477.1|1.4e-1194.44PREDICTED: flowering time control protein FCA isoform X2 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009908 flower development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.300640.1Cucsa.300640.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.300640Carg11167Silver-seed gourdcarcgyB0934
The following gene(s) are paralogous to this gene:

None