Cucsa.291880 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.291880
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	LINE-1 reverse transcriptase like
Location	scaffold02766 : 470599 .. 471360 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGTATCAAGAATCCTAAATATTCAGTCTTCATCAATGGAAGGCCAAGAGGAAGAATTTCAGCTTCAAGGGGTCTTAGACAAGAAGGTCCTCTTTCTCCCTTCCTTTTTCTTCTGATTAGTGACGTTTTGAGCAGTCTCTTCTCCAACCTTCATAAGAAATAAATGTTTGAAGGCTTTCTAGTTGGAATCTTTCAATTTGCAGATGATACACTCCAGTTTTGTAAATTTGATGAGGAAAGGATGGAAAATCGTAGGAAAACATTACTAGTCTTTGAATGGTGTTCCGGTCAAATGATTAATTGGGATAAATCAGCAATTTGTGGTTTAAATATTGATGACAATAAGGTTATTTCAACAGAAGACATTTTAAACTGCAAGGTAGAAAGTCTCCCCTTCATTTATCTCGGTCTTCCTTTGGGAGGTTATCCAAAAAAGTGCTCATTTTTGGCAGCCCATTCTTGATAAAGTCCATGGAAAGCTAGATAAATGGAGAAGATACAATCTCCCTAGGGGTGGGAGGATTACACTATGCAAATCAGTTTTTtCCAGCCTCCCCACCAACTATATGTTTGTTTtCCTCATGCCAGAATCTGCTCTAAGCTCTTTGGAAAGAATCATGAGAAAGTTCTTTTGGGAAGGAAACAAGGGAGGCAAGCTAAACCACCTAGTCAAATGGGATGCTGCAATTAAATCTTACAAAGATGGAGGACTTAGTTTGGGCAAGCTGAAGCACAAGAATCTGGCCTTATTGTCTAG

mRNA sequence

atgggatgtatcaagaatcctaaatattcagtcttcatcaatggaaggccaagaggaagaatttcagcttcaaggggtcttagacaagaaggtcctctttctcccttcctttttcttctgattagtgacgttttgagcagctttctagttggaatctttcaatttgcagatgatacactccagttttgtaaatttgatgaggaaaggatggaaaatcgtaggaaaacattactagtctttgaatggtgttccggtcaaatgattaattgggataaatcagcaatttgtggtttaaatattgatgacaataaggttatttcaacagaagacattttaaactgcaaggtagaaagtctccccttcatttatctcggtcttcctttgggagtccatggaaagctagataaatggagaagatacaatctccctaggggtgggaggattacactatgcaaatcagttttttccagcctccccaccaactatatgtttgttttcctcatgccagaatctgctctaagctctttggaaagaatcatgagaaagttcttttgggaaggaaacaagggaggcaagctaaaccacctagtcaaatgggatgctgcaattaaatcttacaaagatggaggacttagtttgggcaagctgaagcacaagaatctggccttattgtctag

Coding sequence (CDS)

ATGGGATGTATCAAGAATCCTAAATATTCAGTCTTCATCAATGGAAGGCCAAGAGGAAGAATTTCAGCTTCAAGGGGTCTTAGACAAGAAGGTCCTCTTTCTCCCTTCCTTTTTCTTCTGATTAGTGACGTTTTGAGCAGCTTTCTAGTTGGAATCTTTCAATTTGCAGATGATACACTCCAGTTTTGTAAATTTGATGAGGAAAGGATGGAAAATCGTAGGAAAACATTACTAGTCTTTGAATGGTGTTCCGGTCAAATGATTAATTGGGATAAATCAGCAATTTGTGGTTTAAATATTGATGACAATAAGGTTATTTCAACAGAAGACATTTTAAACTGCAAGGTAGAAAGTCTCCCCTTCATTTATCTCGGTCTTCCTTTGGGAGTCCATGGAAAGCTAGATAAATGGAGAAGATACAATCTCCCTAGGGGTGGGAGGATTACACTATGCAAATCAGTTTTTtCCAGCCTCCCCACCAACTATATGTTTGTTTtCCTCATGCCAGAATCTGCTCTAAGCTCTTTGGAAAGAATCATGAGAAAGTTCTTTTGGGAAGGAAACAAGGGAGGCAAGCTAAACCACCTAGTCAAATGGGATGCTGCAATTAAATCTTACAAAGATGGAGGACTTAGTTTGGGCAAGCTGAAGCACAAGAATCTGGCCTTATTGTCTAG

Protein sequence

MGCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFLVGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNIDDNKVISTEDILNCKVESLPFIYLGLPLGVHGKLDKWRRYNLPRGGRITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSYKDGGLSLGKLKHKNLALLSX

Homology

[Close]

BLAST of Cucsa.291880 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.4e-13
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 130 VHGKLDKWRRYNLPRGGRITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNK 189
           V  ++  WR   L   GR+TL K+V SS+P + M   L+P+S L+ L+++ R F W    
Sbjct: 20  VSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTA 79

Query: 190 GGKLNHLVKWDAAIKSYKDGGLSLGKLKHKNLALLS 226
             K  HLVKW       K+GGL +   K  N AL+S
Sbjct: 80  EKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALIS 115

[Close]

BLAST of Cucsa.291880 vs. TrEMBL
Match: A5BUT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026823 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.4e-43
Identity = 100/258 (38.76%), Postives = 140/258 (54.26%), Query Frame = 1


Query: 2    GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
            GC+ +  +++ +NG  +G + ASRGLRQ  PLSPFLF L++DVLS  L            
Sbjct: 1239 GCLSSVSFAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNLMEGF 1298

Query: 62   --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                    V   QF DDT+ F    EE ++  +  LLVF   SG  +N +KS+I G+N+D
Sbjct: 1299 RVGRNRTRVSHLQFVDDTIFFSNSREEELQTLKSLLLVFGHISGLKVNLNKSSIYGINLD 1358

Query: 122  DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
               +    ++L+CK    P +YLGLPLG               +  +LD W++  L  GG
Sbjct: 1359 QAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISSRLDGWQKAYLSXGG 1418

Query: 182  RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 225
            RITL +S  S LP+ ++ +F MP S  + +ER+ R F W G   GK +HLV+WD   K  
Sbjct: 1419 RITLIQSCLSHLPSYFLSLFKMPASVAAKIERLQRDFLWSGVGEGKRDHLVRWDIVCKPK 1478

[Close]

BLAST of Cucsa.291880 vs. TrEMBL
Match: A5BJC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001463 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.4e-43
Identity = 100/258 (38.76%), Postives = 139/258 (53.88%), Query Frame = 1


Query: 2    GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
            GC+ +  ++V +NG  +G + ASRGLRQ+ PLSPFLF +++DVLS  L            
Sbjct: 1315 GCLSSVSFAVLVNGNAKGWVKASRGLRQDNPLSPFLFTIVADVLSRMLLKAEERNVLEGF 1374

Query: 62   --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                    V   QFADDT+ F    EE M   +  LLVFE  SG  +N DKS I G+N++
Sbjct: 1375 RVGRNRIRVSHLQFADDTIFFSSTREEDMMTLKNVLLVFEHISGLKVNLDKSNIYGINLE 1434

Query: 122  DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
             N +    ++L+CK    P +YLGLPLG               +  +LD W++  L  GG
Sbjct: 1435 QNHLSRLAEMLDCKAFGWPMLYLGLPLGGNPKACGFWNPVIKRISRRLDGWQKAYLSFGG 1494

Query: 182  RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 225
            RITL +S  + +P  ++ +F +P S    +ER+ R F W G   GK +HLV WD   K  
Sbjct: 1495 RITLIQSCLTHMPCYFLSLFKIPSSVAXKIERMQRDFLWSGIGEGKRDHLVNWDIVCKPK 1554

[Close]

BLAST of Cucsa.291880 vs. TrEMBL
Match: A5AES0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008302 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.3e-43
Identity = 100/258 (38.76%), Postives = 139/258 (53.88%), Query Frame = 1


Query: 2   GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
           GC+ +  Y+V +NG  +G + ASRGLRQ  PLSPFLF +++DVLS  L            
Sbjct: 109 GCLSSVSYAVLVNGNAKGWVKASRGLRQGDPLSPFLFNIVADVLSRMLLKAEERNVLEGF 168

Query: 62  --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                   V   QFADDT+ F    EE M   +  LLVF   SG  +N DKS I G+N++
Sbjct: 169 RVGRNRTRVSHLQFADDTIFFSSTREEBMMTLKSVLLVFGHISGLKVNLDKSNIYGINLE 228

Query: 122 DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
            N +    ++L+CK    P +YLGLPLG               +  +LD W++  L  GG
Sbjct: 229 QNHLSRLAEMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAYLSFGG 288

Query: 182 RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 225
           RITL +S  + +P  ++ +F +P S  + +ER+ R+F W G   GK +HLV WD   K  
Sbjct: 289 RITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFLWSGVGEGKRDHLVNWDVVCKPK 348

[Close]

BLAST of Cucsa.291880 vs. TrEMBL
Match: A5C4H7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009635 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.6e-42
Identity = 100/258 (38.76%), Postives = 138/258 (53.49%), Query Frame = 1


Query: 2   GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
           GC+ +  ++V +NG  +G + ASRGLRQ  PLSPFLF +++DVLS  L            
Sbjct: 166 GCLSSVSFAVLVNGNAKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGF 225

Query: 62  --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                   V   QFADDT+ F    EE M   +  LLVF   SG  +N DKS I G+N++
Sbjct: 226 KVGRNRTRVSHLQFADDTIFFSSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLE 285

Query: 122 DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
            N +    ++L+CK    P +YLGLPLG               +  +LD W++  L  GG
Sbjct: 286 QNHLSRLAEMLDCKASGWPILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGG 345

Query: 182 RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 225
           RITL +S  + +P  ++ +F +P S  S +ER+ R F W G   GK +HLV WD   K  
Sbjct: 346 RITLIQSCLTHMPCYFLSLFKIPASVASKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPK 405

[Close]

BLAST of Cucsa.291880 vs. TrEMBL
Match: A5BYB2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031500 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.1e-42
Identity = 98/258 (37.98%), Postives = 140/258 (54.26%), Query Frame = 1


Query: 2   GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
           GC+ +  Y++ +NG  +G + A+RGLRQ  PLSPFLF +++DVLS  L            
Sbjct: 368 GCLSSVSYAILVNGNAKGWVKAARGLRQGDPLSPFLFTIVADVLSRMLLKAEERNLLEGF 427

Query: 62  --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                   V   QFADDT+ F    EE ++  +  LLVF   SG  +N DKS + G+N+D
Sbjct: 428 RVGRNRCRVSHLQFADDTILFASPKEEEVQTLKSLLLVFGQISGLKVNLDKSNLFGINLD 487

Query: 122 DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
            N +     +L+CK    P +YLGLPLG               +  +LD W++  L  GG
Sbjct: 488 QNHLSRLALLLDCKASDWPILYLGLPLGRNPTAYGFWDPVIERISRRLDGWQKAYLSFGG 547

Query: 182 RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 225
           RITL  S  S +P+ ++ +F +P S  + +ER+ R F W G   GK +HLV+W+A  K  
Sbjct: 548 RITLLHSCLSHIPSYFLSLFKIPASVAAKIERLQRDFLWSGVGEGKRDHLVRWEAVCKPR 607

[Close]

BLAST of Cucsa.291880 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 189.1 bits (479), Expect = 8.4e-45
Identity = 108/259 (41.70%), Postives = 144/259 (55.60%), Query Frame = 1


Query: 2   GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
           GC+ +  +SV INGRPRG+  ASRGLRQ  PLSPFLF L+ DVLS  +            
Sbjct: 138 GCLSSANFSVLINGRPRGKFQASRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENHLIKGL 197

Query: 62  --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                   +   QFADDT+ F   +E    N  + L +F   SG  IN  K  + G+N D
Sbjct: 198 CIGQEKVEISHLQFADDTIFFLAXBEGGWNNLLELLKLFCSVSGLKINKAKCYLAGINSD 257

Query: 122 DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
             K+    D   C+V S P  YLGLPLG               +  +L  W++  L RGG
Sbjct: 258 CEKLNRLADSWGCEVGSWPIKYLGLPLGGRPRALKFWDPXVDKMEKRLQSWKKAFLSRGG 317

Query: 182 RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 226
           R+TL +SV  SLPT YM +F MP   +  LE++M+ F WEG + GK N+LVKW+  IKS 
Sbjct: 318 RLTLIQSVLGSLPTYYMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWEIVIKSK 377

[Close]

BLAST of Cucsa.291880 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 109/259 (42.08%), Postives = 144/259 (55.60%), Query Frame = 1


Query: 2    GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
            GC+ +  +SV INGRPRG+  ASRGLRQ  PLSPFLF L+ DVLS  +            
Sbjct: 1161 GCLSSANFSVLINGRPRGKFQASRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENHLIKGL 1220

Query: 62   --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                    +   QFADDT+ F   DE    N  + L +F   SG  IN  K  + G+N D
Sbjct: 1221 CIGQEKVEIXHLQFADDTIFFLAEDEGGWNNLLELLKLFCSVSGLKINKAKCYLAGINSD 1280

Query: 122  DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
              K+    D   C+V S P  YLGLPLG               +  +L  W++  L RGG
Sbjct: 1281 CEKLNRLADSWGCEVGSWPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAFLSRGG 1340

Query: 182  RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 226
            R+TL +SV  SLPT YM +F MP   +  LE++M+ F WEG + GK N+LVKW+  IKS 
Sbjct: 1341 RLTLIQSVLGSLPTYYMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWEIVIKSK 1400

[Close]

BLAST of Cucsa.291880 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 107/259 (41.31%), Postives = 142/259 (54.83%), Query Frame = 1


Query: 2    GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
            GC+ +  +SV INGRPRG+   SRGLRQ  PLSPFLF L+ DVLS  +            
Sbjct: 1612 GCLSSANFSVLINGRPRGKFQXSRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENHLIKGL 1671

Query: 62   --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                    +   QFADDT+ F    E    N  + L +F   SG  IN  K  + G+N D
Sbjct: 1672 CIGQEKVEIXHLQFADDTIFFLAXXEGGWNNLLELLKLFCSVSGLKINKAKCYLXGINSD 1731

Query: 122  DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
              K+    D   C+V S P  YLGLPLG               +  +L  W++  L RGG
Sbjct: 1732 CEKLNRLADSWGCEVGSXPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAFLSRGG 1791

Query: 182  RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 226
            R+TL +SV  SLPT YM +F MP   +  LE++M+ F WEG + GK N+LVKW+  IKS 
Sbjct: 1792 RLTLIQSVLGSLPTYYMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWEIVIKSK 1851

[Close]

BLAST of Cucsa.291880 vs. NCBI nr
Match: gi|147782683|emb|CAN75028.1| (hypothetical protein VITISV_026823 [Vitis vinifera])

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 100/258 (38.76%), Postives = 140/258 (54.26%), Query Frame = 1


Query: 2    GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
            GC+ +  +++ +NG  +G + ASRGLRQ  PLSPFLF L++DVLS  L            
Sbjct: 1239 GCLSSVSFAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNLMEGF 1298

Query: 62   --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                    V   QF DDT+ F    EE ++  +  LLVF   SG  +N +KS+I G+N+D
Sbjct: 1299 RVGRNRTRVSHLQFVDDTIFFSNSREEELQTLKSLLLVFGHISGLKVNLNKSSIYGINLD 1358

Query: 122  DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
               +    ++L+CK    P +YLGLPLG               +  +LD W++  L  GG
Sbjct: 1359 QAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISSRLDGWQKAYLSXGG 1418

Query: 182  RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 225
            RITL +S  S LP+ ++ +F MP S  + +ER+ R F W G   GK +HLV+WD   K  
Sbjct: 1419 RITLIQSCLSHLPSYFLSLFKMPASVAAKIERLQRDFLWSGVGEGKRDHLVRWDIVCKPK 1478

[Close]

BLAST of Cucsa.291880 vs. NCBI nr
Match: gi|147843027|emb|CAN83313.1| (hypothetical protein VITISV_001463 [Vitis vinifera])

HSP 1 Score: 182.6 bits (462), Expect = 7.8e-43
Identity = 100/258 (38.76%), Postives = 139/258 (53.88%), Query Frame = 1


Query: 2    GCIKNPKYSVFINGRPRGRISASRGLRQEGPLSPFLFLLISDVLSSFL------------ 61
            GC+ +  ++V +NG  +G + ASRGLRQ+ PLSPFLF +++DVLS  L            
Sbjct: 1315 GCLSSVSFAVLVNGNAKGWVKASRGLRQDNPLSPFLFTIVADVLSRMLLKAEERNVLEGF 1374

Query: 62   --------VGIFQFADDTLQFCKFDEERMENRRKTLLVFEWCSGQMINWDKSAICGLNID 121
                    V   QFADDT+ F    EE M   +  LLVFE  SG  +N DKS I G+N++
Sbjct: 1375 RVGRNRIRVSHLQFADDTIFFSSTREEDMMTLKNVLLVFEHISGLKVNLDKSNIYGINLE 1434

Query: 122  DNKVISTEDILNCKVESLPFIYLGLPLG---------------VHGKLDKWRRYNLPRGG 181
             N +    ++L+CK    P +YLGLPLG               +  +LD W++  L  GG
Sbjct: 1435 QNHLSRLAEMLDCKAFGWPMLYLGLPLGGNPKACGFWNPVIKRISRRLDGWQKAYLSFGG 1494

Query: 182  RITLCKSVFSSLPTNYMFVFLMPESALSSLERIMRKFFWEGNKGGKLNHLVKWDAAIKSY 225
            RITL +S  + +P  ++ +F +P S    +ER+ R F W G   GK +HLV WD   K  
Sbjct: 1495 RITLIQSCLTHMPCYFLSLFKIPSSVAXKIERMQRDFLWSGIGEGKRDHLVNWDIVCKPK 1554

The following BLAST results are available for this feature:

BLAST of Cucsa.291880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	8.4e-13	38.54	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of Cucsa.291880 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BUT3_VITVI	2.4e-43	38.76	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026823 PE=4 SV=1	[more]
A5BJC9_VITVI	5.4e-43	38.76	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001463 PE=4 SV=1	[more]
A5AES0_VITVI	9.3e-43	38.76	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008302 PE=4 SV=1	[more]
A5C4H7_VITVI	1.6e-42	38.76	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009635 PE=4 SV=1	[more]
A5BYB2_VITVI	2.1e-42	37.98	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031500 PE=4 SV=1	[more]

BLAST of Cucsa.291880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|658048925\|ref\|XP_008360144.1\|	8.4e-45	41.70	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|658030603\|ref\|XP_008350747.1\|	1.1e-44	42.08	PREDICTED: uncharacterized protein LOC103414113 [Malus domestica]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	1.6e-43	41.31	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]
gi\|147782683\|emb\|CAN75028.1\|	3.5e-43	38.76	hypothetical protein VITISV_026823 [Vitis vinifera]	[more]
gi\|147843027\|emb\|CAN83313.1\|	7.8e-43	38.76	hypothetical protein VITISV_001463 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.291880.1	Cucsa.291880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..127 score: 1.
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 1..146 score: 2.1
None	No IPR available	PANTHER	PTHR19446:SF351	SUBFAMILY NOT NAMED	coord: 1..146 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.291880	Cucumber (Chinese Long) v3	cgycucB451
Cucsa.291880	Watermelon (97103) v2	cgywmbB508
Cucsa.291880	Wild cucumber (PI 183967)	cgycpiB441
Cucsa.291880	Cucumber (Chinese Long) v2	cgycuB418
Cucsa.291880	Melon (DHL92) v3.5.1	cgymeB485
Cucsa.291880	Watermelon (Charleston Gray)	cgywcgB507
Cucsa.291880	Bottle gourd (USVL1VR-Ls)	cgylsiB474