Cucsa.291850 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.291850
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Exportin-4
Location	scaffold02766 : 448591 .. 448857 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGTTGTATGGTTTCTATCAAGATGGTCATCAACATATTTACTTCACCCCGAAGAAATCATCACTACTAACTATGGTAAAGAACATGATAATGAGTTCCAGTCACAGCATACCAGGAAAGTCATTTACAGCTTTTTTGGAGAACACGGCCAAGGAATTCCTATACTTGATATCATTATTTGCATAGCCGCGACTACGCTTTTGTCTTATCCTGGGGAGAAAGACTTGCATGTATGGGTTTCCTCCTCAATTTTTAATGCTGCTTGA

mRNA sequence

TCAGTTGTATGGTTTCTATCAAGATGGTCATCAACATATTTACTTCACCCCGAAGAAATCATCACTACTAACTATGGTAAAGAACATGATAATGAGTTCCAGTCACAGCATACCAGGAAAGTCATTTACAGCTTTTTTGGAGAACACGGCCAAGGAATTCCTATACTTGATATCATTATTTGCATAGCCGCGACTACGCTTTTGTCTTATCCTGGGGAGAAAGACTTGCATGTATGGGTTTCCTCCTCAATTTTTAATGCTGCTTGA

Coding sequence (CDS)

TCAGTTGTATGGTTTCTATCAAGATGGTCATCAACATATTTACTTCACCCCGAAGAAATCATCACTACTAACTATGGTAAAGAACATGATAATGAGTTCCAGTCACAGCATACCAGGAAAGTCATTTACAGCTTTTTTGGAGAACACGGCCAAGGAATTCCTATACTTGATATCATTATTTGCATAGCCGCGACTACGCTTTTGTCTTATCCTGGGGAGAAAGACTTGCATGTATGGGTTTCCTCCTCAATTTTTAATGCTGCTTGA

Protein sequence

SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIIICIAATTLLSYPGEKDLHVWVSSSIFNAA*

Homology

[Close]

BLAST of Cucsa.291850 vs. TrEMBL
Match: A0A0A0M0V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680090 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-38
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 60
           SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII
Sbjct: 285 SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 344

Query: 61  CIAATTLLSYPGEKDLHVWVSSSIFNA 88
           CIAATTLLSYPGEKDLH    + +  A
Sbjct: 345 CIAATTLLSYPGEKDLHALTCNQLLRA 371

[Close]

BLAST of Cucsa.291850 vs. TrEMBL
Match: F6H612_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00660 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-17
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEII--TTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDI 60
           +V+WFL+RWSSTYL+ PEE      N G +H++  +SQH+RK + SFFG++ QG P+LD+
Sbjct: 629 AVIWFLARWSSTYLMVPEECREDNCNSGYDHESWLRSQHSRKALLSFFGQYNQGKPVLDV 688

Query: 61  IICIAATTLLSYPGEKDL 77
           I+ I+  TL+SYPGEKDL
Sbjct: 689 IVRISMMTLISYPGEKDL 706

[Close]

BLAST of Cucsa.291850 vs. TrEMBL
Match: A5ARC3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014172 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-17
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEII--TTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDI 60
           +V+WFL+RWSSTYL+ PEE      N G +H++  +SQH+RK + SFFG++ QG P+LD+
Sbjct: 329 AVIWFLARWSSTYLMVPEECREDNCNSGYDHESWLRSQHSRKALLSFFGQYNQGKPVLDV 388

Query: 61  IICIAATTLLSYPGEKDL 77
           I+ I+  TL+SYPGEKDL
Sbjct: 389 IVRISMMTLISYPGEKDL 406

[Close]

BLAST of Cucsa.291850 vs. TrEMBL
Match: B9S7K9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609300 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-17
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQH--TRKVIYSFFGEHGQGIPILDI 60
           +V+WFL+RWS TYL+ PEE   +N    HDNE+Q +   +RK + SFFGEH QG P+LD 
Sbjct: 627 AVIWFLARWSCTYLM-PEEFRDSNINAGHDNEYQFRQLQSRKALLSFFGEHNQGKPVLDT 686

Query: 61  IICIAATTLLSYPGEKDL 77
           I+ I+ TTLLSYPGEKDL
Sbjct: 687 IVRISVTTLLSYPGEKDL 703

[Close]

BLAST of Cucsa.291850 vs. TrEMBL
Match: A0A067JUS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23548 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-16
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDN--EFQSQHTRKVIYSFFGEHGQGIPILDI 60
           S++WFL+RWS TY++  EE   +N+   HD+  +FQ  H+RK + SFFGEH QG  +LDI
Sbjct: 625 SLIWFLARWSRTYVMS-EEFRESNFNSSHDHGCQFQQLHSRKALLSFFGEHNQGKLVLDI 684

Query: 61  IICIAATTLLSYPGEKDL 77
           I+ I+ TTLLSYPGEKDL
Sbjct: 685 IVRISVTTLLSYPGEKDL 701

[Close]

BLAST of Cucsa.291850 vs. TAIR10
Match: AT3G04490.1 (AT3G04490.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 60
           +V+WFL+RWS TYLL  EE    N G    N+ QS  +R  ++++F EH QG  +LDII+
Sbjct: 632 AVIWFLARWSFTYLLLVEEC---NLGS---NKLQSLPSRACLFTYFNEHNQGKFVLDIIV 691

Query: 61  CIAATTLLSYPGEKDL 77
            I+ T+L SYPGEKDL
Sbjct: 692 RISLTSLTSYPGEKDL 701

[Close]

BLAST of Cucsa.291850 vs. NCBI nr
Match: gi|778664306|ref|XP_011660267.1| (PREDICTED: exportin-4 isoform X2 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 60
           SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII
Sbjct: 524 SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 583

Query: 61  CIAATTLLSYPGEKDLHVWVSSSIFNA 88
           CIAATTLLSYPGEKDLH    + +  A
Sbjct: 584 CIAATTLLSYPGEKDLHALTCNQLLRA 610

[Close]

BLAST of Cucsa.291850 vs. NCBI nr
Match: gi|700211666|gb|KGN66762.1| (hypothetical protein Csa_1G680090 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 60
           SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII
Sbjct: 285 SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 344

Query: 61  CIAATTLLSYPGEKDLHVWVSSSIFNA 88
           CIAATTLLSYPGEKDLH    + +  A
Sbjct: 345 CIAATTLLSYPGEKDLHALTCNQLLRA 371

[Close]

BLAST of Cucsa.291850 vs. NCBI nr
Match: gi|778664303|ref|XP_011660266.1| (PREDICTED: exportin-4 isoform X1 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 60
           SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII
Sbjct: 627 SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 686

Query: 61  CIAATTLLSYPGEKDLHVWVSSSIFNA 88
           CIAATTLLSYPGEKDLH    + +  A
Sbjct: 687 CIAATTLLSYPGEKDLHALTCNQLLRA 713

[Close]

BLAST of Cucsa.291850 vs. NCBI nr
Match: gi|659086150|ref|XP_008443789.1| (PREDICTED: exportin-4 isoform X2 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 60
           SVVWFLSRWSSTYLLHPEEIITTNYGKE DNEFQSQHTRKVIYSFFGEHGQG+PILDIII
Sbjct: 524 SVVWFLSRWSSTYLLHPEEIITTNYGKERDNEFQSQHTRKVIYSFFGEHGQGVPILDIII 583

Query: 61  CIAATTLLSYPGEKDLHVWVSSSIFNA 88
           CIAATTLLSYPGEKDL     + +  A
Sbjct: 584 CIAATTLLSYPGEKDLQALTCNQLLRA 610

[Close]

BLAST of Cucsa.291850 vs. NCBI nr
Match: gi|659086148|ref|XP_008443788.1| (PREDICTED: exportin-4 isoform X1 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1   SVVWFLSRWSSTYLLHPEEIITTNYGKEHDNEFQSQHTRKVIYSFFGEHGQGIPILDIII 60
           SVVWFLSRWSSTYLLHPEEIITTNYGKE DNEFQSQHTRKVIYSFFGEHGQG+PILDIII
Sbjct: 627 SVVWFLSRWSSTYLLHPEEIITTNYGKERDNEFQSQHTRKVIYSFFGEHGQGVPILDIII 686

Query: 61  CIAATTLLSYPGEKDLHVWVSSSIFNA 88
           CIAATTLLSYPGEKDL     + +  A
Sbjct: 687 CIAATTLLSYPGEKDLQALTCNQLLRA 713

The following BLAST results are available for this feature:

BLAST of Cucsa.291850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0V8_CUCSA	1.6e-38	89.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680090 PE=4 SV=1	[more]
F6H612_VITVI	4.5e-17	55.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00660 PE=4 SV=...	[more]
A5ARC3_VITVI	4.5e-17	55.13	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014172 PE=4 SV=1	[more]
B9S7K9_RICCO	4.5e-17	58.97	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609300 PE=4 SV=1	[more]
A0A067JUS4_JATCU	2.9e-16	56.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23548 PE=4 SV=1	[more]

BLAST of Cucsa.291850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04490.1	4.2e-14	51.32	unknown protein	[more]

BLAST of Cucsa.291850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664306\|ref\|XP_011660267.1\|	2.3e-38	89.66	PREDICTED: exportin-4 isoform X2 [Cucumis sativus]	[more]
gi\|700211666\|gb\|KGN66762.1\|	2.3e-38	89.66	hypothetical protein Csa_1G680090 [Cucumis sativus]	[more]
gi\|778664303\|ref\|XP_011660266.1\|	2.3e-38	89.66	PREDICTED: exportin-4 isoform X1 [Cucumis sativus]	[more]
gi\|659086150\|ref\|XP_008443789.1\|	2.1e-36	86.21	PREDICTED: exportin-4 isoform X2 [Cucumis melo]	[more]
gi\|659086148\|ref\|XP_008443788.1\|	2.1e-36	86.21	PREDICTED: exportin-4 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.291850.1	Cucsa.291850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.291850	Lsi06G007780	Bottle gourd (USVL1VR-Ls)	cgylsiB474

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.291850	Cucumber (Chinese Long) v3	cgycucB451
Cucsa.291850	Watermelon (97103) v2	cgywmbB508
Cucsa.291850	Wild cucumber (PI 183967)	cgycpiB441
Cucsa.291850	Cucumber (Chinese Long) v2	cgycuB418
Cucsa.291850	Melon (DHL92) v3.5.1	cgymeB485
Cucsa.291850	Watermelon (Charleston Gray)	cgywcgB507