Cucsa.291750 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.291750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DNA polymerase
Location	scaffold02766 : 308805 .. 309034 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAACCTTGGACCATTTATTTCTGCACTGTCTCTTTACTAAGACAGCTTGGGACACTTTGTTTAGAATTTTTGATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGTTGGATGATTGAAGGGCTCAACATTAGAGGTTATAGCCTGAAAGGAAACATCTTATGGAAATGTGCTACTCGGTCCCTTTTGTGGTGCATTTGGAAAGAAATGAATAGTACAATTTTTTAA

mRNA sequence

aggaaaccttggaccatttatttctgcactgtctctttactaagacagcttgggacactttgtttagaatttttgatttggagctttgtcttcctagtaaggttgatagttggatgattgaagggctcaacattagaggttatagcctgaaaggaaacatcttatggaaatgtgctactcggtcccttttgtggtgcatttggaaagaaatgaatagtacaattttttaa

Coding sequence (CDS)

AGGAAACCTTGGACCATTTATTTCTGCACTGTCTCTTTACTAAGACAGCTTGGGACACTTTGTTTAGAATTTTTGATTTGGAGCTTTGTCTTCCTAGTAAGGTTGATAGTTGGATGATTGAAGGGCTCAACATTAGAGGTTATAGCCTGAAAGGAAACATCTTATGGAAATGTGCTACTCGGTCCCTTTTGTGGTGCATTTGGAAAGAAATGAATAGTACAATTTTTTAA

Protein sequence

ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATRSLLWCIWKEMNSTIF*

Homology

[Close]

BLAST of Cucsa.291750 vs. TrEMBL
Match: A5BTG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-09
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1    ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
            ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 1187 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACI 1246

Query: 61   SLLWCIWKEMNSTIF 76
            +L+W +W+E N+ IF
Sbjct: 1247 ALMWVVWRERNARIF 1261

[Close]

BLAST of Cucsa.291750 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-09
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1    ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
            ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 1747 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACI 1806

Query: 61   SLLWCIWKEMNSTIF 76
            +L+W +W+E N+ IF
Sbjct: 1807 ALMWVVWRERNARIF 1821

[Close]

BLAST of Cucsa.291750 vs. TrEMBL
Match: F6H108_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-09
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1   ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
           ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 65  ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACI 124

Query: 61  SLLWCIWKEMNSTIF 76
           +L+W +W+E N+ IF
Sbjct: 125 ALMWVVWRERNARIF 139

[Close]

BLAST of Cucsa.291750 vs. TrEMBL
Match: A5BHW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016347 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1   ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
           ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 835 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSIFDMFFTNFNGFGSSKRGVVLWQDACI 894

Query: 61  SLLWCIWKEMNSTIF 76
           +L+W +W+E N+ IF
Sbjct: 895 ALMWVVWRERNARIF 909

[Close]

BLAST of Cucsa.291750 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-08
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 1   ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
           ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 565 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACI 624

Query: 61  SLLWCIWKEMNSTIF 76
           +L W +W+E N+ IF
Sbjct: 625 ALKWVVWRERNARIF 639

[Close]

BLAST of Cucsa.291750 vs. NCBI nr
Match: gi|147815645|emb|CAN61757.1| (hypothetical protein VITISV_030741 [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1    ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
            ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 1187 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACI 1246

Query: 61   SLLWCIWKEMNSTIF 76
            +L+W +W+E N+ IF
Sbjct: 1247 ALMWVVWRERNARIF 1261

[Close]

BLAST of Cucsa.291750 vs. NCBI nr
Match: gi|147802674|emb|CAN62051.1| (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1    ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
            ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 1747 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACI 1806

Query: 61   SLLWCIWKEMNSTIF 76
            +L+W +W+E N+ IF
Sbjct: 1807 ALMWVVWRERNARIF 1821

[Close]

BLAST of Cucsa.291750 vs. NCBI nr
Match: gi|147835140|emb|CAN76904.1| (hypothetical protein VITISV_016347 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 1   ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
           ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 835 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSIFDMFFTNFNGFGSSKRGVVLWQDACI 894

Query: 61  SLLWCIWKEMNSTIF 76
           +L+W +W+E N+ IF
Sbjct: 895 ALMWVVWRERNARIF 909

[Close]

BLAST of Cucsa.291750 vs. NCBI nr
Match: gi|147792407|emb|CAN63585.1| (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 1   ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
           ET+DHLFLHC  TK  W  LF++  ++   P  +        N  G S +G +LW+ A  
Sbjct: 565 ETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACI 624

Query: 61  SLLWCIWKEMNSTIF 76
           +L W +W+E N+ IF
Sbjct: 625 ALKWVVWRERNARIF 639

[Close]

BLAST of Cucsa.291750 vs. NCBI nr
Match: gi|720073139|ref|XP_010278608.1| (PREDICTED: uncharacterized protein LOC104612742 [Nelumbo nucifera])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 1   ETLDHLFLHCLFTKTAWDTLFRIFDLELCLPSKVDSWMIEGLNIRGYSLKGNILWKCATR 60
           E+ +H+FLHC F+   W+  F  F ++ CL       +++G +++G + +G +LW+    
Sbjct: 31  ESSNHIFLHCSFSSQLWEMAFSYFGVQSCLLESALQ-LLQGWSLKGLNTRGKLLWRIFPS 90

Query: 61  SLLWCIWKEMNSTIF 76
            +LW IWKE NS IF
Sbjct: 91  VILWAIWKERNSRIF 104

The following BLAST results are available for this feature:

BLAST of Cucsa.291750 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BTG1_VITVI	5.0e-09	38.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1	[more]
A5C377_VITVI	5.0e-09	38.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1	[more]
F6H108_VITVI	5.0e-09	38.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=...	[more]
A5BHW7_VITVI	1.1e-08	38.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016347 PE=4 SV=1	[more]
A5BKH7_VITVI	1.5e-08	38.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1	[more]

BLAST of Cucsa.291750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147815645\|emb\|CAN61757.1\|	7.2e-09	38.67	hypothetical protein VITISV_030741 [Vitis vinifera]	[more]
gi\|147802674\|emb\|CAN62051.1\|	7.2e-09	38.67	hypothetical protein VITISV_016641 [Vitis vinifera]	[more]
gi\|147835140\|emb\|CAN76904.1\|	1.6e-08	38.67	hypothetical protein VITISV_016347 [Vitis vinifera]	[more]
gi\|147792407\|emb\|CAN63585.1\|	2.1e-08	38.67	hypothetical protein VITISV_026806 [Vitis vinifera]	[more]
gi\|720073139\|ref\|XP_010278608.1\|	2.7e-08	36.00	PREDICTED: uncharacterized protein LOC104612742 [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.291750.1	Cucsa.291750.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.291750	Cucumber (Chinese Long) v3	cgycucB450
Cucsa.291750	Cucumber (Chinese Long) v3	cgycucB451
Cucsa.291750	Watermelon (97103) v2	cgywmbB508
Cucsa.291750	Wax gourd	cgywgoB591
Cucsa.291750	Cucurbita maxima (Rimu)	cgycmaB0815
Cucsa.291750	Cucurbita maxima (Rimu)	cgycmaB0816
Cucsa.291750	Cucurbita moschata (Rifu)	cgycmoB0809
Cucsa.291750	Cucurbita moschata (Rifu)	cgycmoB0810
Cucsa.291750	Wild cucumber (PI 183967)	cgycpiB440
Cucsa.291750	Wild cucumber (PI 183967)	cgycpiB441
Cucsa.291750	Cucumber (Chinese Long) v2	cgycuB417
Cucsa.291750	Cucumber (Chinese Long) v2	cgycuB418
Cucsa.291750	Melon (DHL92) v3.5.1	cgymeB484
Cucsa.291750	Watermelon (Charleston Gray)	cgywcgB507
Cucsa.291750	Watermelon (97103) v1	cgywmB535
Cucsa.291750	Cucurbita pepo (Zucchini)	cgycpeB0771
Cucsa.291750	Cucurbita pepo (Zucchini)	cgycpeB0772
Cucsa.291750	Bottle gourd (USVL1VR-Ls)	cgylsiB473
Cucsa.291750	Bottle gourd (USVL1VR-Ls)	cgylsiB474
Cucsa.291750	Melon (DHL92) v3.6.1	cgymedB483
Cucsa.291750	Silver-seed gourd	carcgyB0025
Cucsa.291750	Silver-seed gourd	carcgyB1031