Cucsa.289220 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.289220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold02698 : 674588 .. 675009 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAGTGGGAGTTATTTCTTGGGTCGTCTTCATCGTCTTTCTTGCCTTCTATTCAGGTTAACTTCTATATATTTAAGACATTTCAACGTATCGTCGTAAAAGTATGTGTTTGAACAGTTCTGGTTAAAAGAATTAAAAATGATTGAGAAAATTAAGAAAACTGTGATCTCTGATTAACAAACTGATCTGATCATATGGGTATTTTTCTCTCAACATTAATGGATTATTGTAATTACAGGGAGTTTGAACACAAATGCACAACTGTGTTGCATCAATCATCCTGAGTGGGGAGCTTGCAAGCCAGGAGTAGACGATGCAACTGATGGAAGGTGTTGGCTTAAATGCATTGGTGGTTGTGAGAAAGGTGGGATCTGTAAACGAGTTGGGAAGAAACATGTCTGCCATTGTTACTGCTGA

mRNA sequence

ATGGCTAAAGTGGGAGTTATTTCTTGGGTCGTCTTCATCGTCTTTCTTGCCTTCTATTCAGGGAGTTTGAACACAAATGCACAACTGTGTTGCATCAATCATCCTGAGTGGGGAGCTTGCAAGCCAGGAGTAGACGATGCAACTGATGGAAGGTGTTGGCTTAAATGCATTGGTGGTTGTGAGAAAGGTGGGATCTGTAAACGAGTTGGGAAGAAACATGTCTGCCATTGTTACTGCTGA

Coding sequence (CDS)

ATGGCTAAAGTGGGAGTTATTTCTTGGGTCGTCTTCATCGTCTTTCTTGCCTTCTATTCAGGGAGTTTGAACACAAATGCACAACTGTGTTGCATCAATCATCCTGAGTGGGGAGCTTGCAAGCCAGGAGTAGACGATGCAACTGATGGAAGGTGTTGGCTTAAATGCATTGGTGGTTGTGAGAAAGGTGGGATCTGTAAACGAGTTGGGAAGAAACATGTCTGCCATTGTTACTGCTGA

Protein sequence

MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVGKKHVCHCYC*

Homology

[Close]

BLAST of Cucsa.289220 vs. Swiss-Prot
Match: DEF21_ARATH (Defensin-like protein 21 OS=Arabidopsis thaliana GN=At4g14276 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-14
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQ------------LCCINHPEWGACKPGVDDAT 60
          M +  V+S+V+F   +    GS+  + Q            +CC  HP  G C P +DD+ 
Sbjct: 1  MVRTNVVSFVLFAA-IVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSA 60

Query: 61 D--GRCWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          +  G+CW  CI GCE GG CK  G KH+CHC C
Sbjct: 61 EKGGKCWKFCIEGCETGGFCKLFGHKHICHCNC 92

[Close]

BLAST of Cucsa.289220 vs. Swiss-Prot
Match: DEF20_ARATH (Putative defensin-like protein 20 OS=Arabidopsis thaliana GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-14
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 1


Query: 1  MAKVGVISWVVF--IVFLAFYSGS-----LNTNAQLCCINHPEWGACKPGVDDAT--DGR 60
          M +  V+S+V+F  IV    Y        +  +  +CC  HP  G C PG+DD    DG+
Sbjct: 1  MVRTNVVSFVLFAAIVLCILYGQKHIAPWIFEDKSICCKEHPSVGRCLPGIDDDAEKDGK 60

Query: 61 CWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          CW  CI GCE GG CK    KH+CHC C
Sbjct: 61 CWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]

BLAST of Cucsa.289220 vs. TrEMBL
Match: A0A0A0LYL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573040 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-43
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGGICKRVGKKHVCHCYC
Sbjct: 61 EKGGICKRVGKKHVCHCYC 79

[Close]

BLAST of Cucsa.289220 vs. TrEMBL
Match: A0A0A0M1N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573060 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-27
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G    +VFI FL  YSGS+NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGG CK +  K+VCHCYC
Sbjct: 61 EKGGFCKHLSDKNVCHCYC 79

[Close]

BLAST of Cucsa.289220 vs. TrEMBL
Match: A0A0A0LWJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573030 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-24
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G I   VF+ FL  Y+GS+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          E+GG CK++   HVCHCYC
Sbjct: 61 ERGGFCKKLWYGHVCHCYC 79

[Close]

BLAST of Cucsa.289220 vs. TrEMBL
Match: A0A0A0LZ58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573070 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-23
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDA--TDGRCWLKCIG 60
          MAKVG+IS V+ +VFL FYSG+LN NA +CC N+P  G+CKPGVDD+   +G+CW  C  
Sbjct: 1  MAKVGLISCVL-VVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCEKGGICKRVGK--KHVCHCYC 80
          GC KGG CKRVG+  +HVCHCYC
Sbjct: 61 GCTKGGFCKRVGRNGRHVCHCYC 82

[Close]

BLAST of Cucsa.289220 vs. TrEMBL
Match: A0A0A0LW61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573050 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 20 SGSLNTNAQLCCINHPEWGACKPGVDDA--TDGRCWLKCIGGCEKGGICKRVGK--KHVC 79
          +G+LN NA +CC N+P  G+CKPGVDD+   +G+CW  C  GC KGG CKRVG+  +HVC
Sbjct: 4  TGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVC 63

[Close]

BLAST of Cucsa.289220 vs. TAIR10
Match: AT4G14276.1 (AT4G14276.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-15
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQ------------LCCINHPEWGACKPGVDDAT 60
          M +  V+S+V+F   +    GS+  + Q            +CC  HP  G C P +DD+ 
Sbjct: 1  MVRTNVVSFVLFAA-IVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSA 60

Query: 61 D--GRCWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          +  G+CW  CI GCE GG CK  G KH+CHC C
Sbjct: 61 EKGGKCWKFCIEGCETGGFCKLFGHKHICHCNC 92

[Close]

BLAST of Cucsa.289220 vs. TAIR10
Match: AT5G52605.1 (AT5G52605.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-15
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 1


Query: 1  MAKVGVISWVVF--IVFLAFYSGS-----LNTNAQLCCINHPEWGACKPGVDDAT--DGR 60
          M +  V+S+V+F  IV    Y        +  +  +CC  HP  G C PG+DD    DG+
Sbjct: 1  MVRTNVVSFVLFAAIVLCILYGQKHIAPWIFEDKSICCKEHPSVGRCLPGIDDDAEKDGK 60

Query: 61 CWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          CW  CI GCE GG CK    KH+CHC C
Sbjct: 61 CWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]

BLAST of Cucsa.289220 vs. NCBI nr
Match: gi|700211038|gb|KGN66134.1| (hypothetical protein Csa_1G573040 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-43
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGGICKRVGKKHVCHCYC
Sbjct: 61 EKGGICKRVGKKHVCHCYC 79

[Close]

BLAST of Cucsa.289220 vs. NCBI nr
Match: gi|659100545|ref|XP_008451146.1| (PREDICTED: defensin-like protein 22 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 22  SLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVGKKHVCHCYC 80
           SLNTNAQLCCINHPEWGAC PGVDDATDGRCW +CIGGCEKGG CKRVG+KHVCHCYC
Sbjct: 49  SLNTNAQLCCINHPEWGACWPGVDDATDGRCWRRCIGGCEKGGFCKRVGRKHVCHCYC 106

[Close]

BLAST of Cucsa.289220 vs. NCBI nr
Match: gi|659100545|ref|XP_008451146.1| (PREDICTED: defensin-like protein 22 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 20 SGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGG 65
          +GS+NTNAQLCC NHPE G+CKPGVDD  DG+CWL CI GCEKGG
Sbjct: 2  AGSMNTNAQLCCNNHPELGSCKPGVDDDYDGKCWLHCIAGCEKGG 46

HSP 2 Score: 130.2 bits (326), Expect = 1.6e-27
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G    +VFI FL  YSGS+NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGG CK +  K+VCHCYC
Sbjct: 61 EKGGFCKHLSDKNVCHCYC 79

[Close]

BLAST of Cucsa.289220 vs. NCBI nr
Match: gi|700211037|gb|KGN66133.1| (hypothetical protein Csa_1G573030 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.9e-24
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G I   VF+ FL  Y+GS+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          E+GG CK++   HVCHCYC
Sbjct: 61 ERGGFCKKLWYGHVCHCYC 79

[Close]

BLAST of Cucsa.289220 vs. NCBI nr
Match: gi|700211041|gb|KGN66137.1| (hypothetical protein Csa_1G573070 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-23
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDA--TDGRCWLKCIG 60
          MAKVG+IS V+ +VFL FYSG+LN NA +CC N+P  G+CKPGVDD+   +G+CW  C  
Sbjct: 1  MAKVGLISCVL-VVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCEKGGICKRVGK--KHVCHCYC 80
          GC KGG CKRVG+  +HVCHCYC
Sbjct: 61 GCTKGGFCKRVGRNGRHVCHCYC 82

The following BLAST results are available for this feature:

BLAST of Cucsa.289220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEF21_ARATH	3.5e-14	38.71	Defensin-like protein 21 OS=Arabidopsis thaliana GN=At4g14276 PE=2 SV=1	[more]
DEF20_ARATH	3.5e-14	42.05	Putative defensin-like protein 20 OS=Arabidopsis thaliana GN=At5g52605 PE=3 SV=1	[more]

BLAST of Cucsa.289220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYL5_CUCSA	1.1e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573040 PE=4 SV=1	[more]
A0A0A0M1N0_CUCSA	1.1e-27	68.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573060 PE=4 SV=1	[more]
A0A0A0LWJ9_CUCSA	2.0e-24	63.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573030 PE=4 SV=1	[more]
A0A0A0LZ58_CUCSA	2.9e-23	62.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573070 PE=4 SV=1	[more]
A0A0A0LW61_CUCSA	1.2e-16	59.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573050 PE=4 SV=1	[more]

BLAST of Cucsa.289220 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14276.1	2.0e-15	38.71	Defensin-like (DEFL) family protein	[more]
AT5G52605.1	2.0e-15	42.05	Defensin-like (DEFL) family protein	[more]

BLAST of Cucsa.289220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211038\|gb\|KGN66134.1\|	1.6e-43	100.00	hypothetical protein Csa_1G573040 [Cucumis sativus]	[more]
gi\|659100545\|ref\|XP_008451146.1\|	1.9e-28	91.38	PREDICTED: defensin-like protein 22 [Cucumis melo]	[more]
gi\|659100545\|ref\|XP_008451146.1\|	1.2e-14	77.78	PREDICTED: defensin-like protein 22 [Cucumis melo]	[more]
gi\|700211037\|gb\|KGN66133.1\|	2.9e-24	63.29	hypothetical protein Csa_1G573030 [Cucumis sativus]	[more]
gi\|700211041\|gb\|KGN66137.1\|	4.2e-23	62.65	hypothetical protein Csa_1G573070 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022618	Defensin-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Biological Process**
Term	Definition
GO:0050832	defense response to fungus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.289220.1	Cucsa.289220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022618	Defensin-like protein	PFAM	PF10868	Defensin_like	coord: 29..79 score: 1.2
None	No IPR available	PANTHER	PTHR34453	FAMILY NOT NAMED	coord: 2..79 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.289220	Bottle gourd (USVL1VR-Ls)	cgylsiB471
Cucsa.289220	Melon (DHL92) v3.6.1	cgymedB480
Cucsa.289220	Cucumber (Chinese Long) v3	cgycucB446
Cucsa.289220	Watermelon (97103) v2	cgywmbB506
Cucsa.289220	Cucurbita maxima (Rimu)	cgycmaB0809
Cucsa.289220	Cucurbita moschata (Rifu)	cgycmoB0802
Cucsa.289220	Wild cucumber (PI 183967)	cgycpiB437
Cucsa.289220	Cucumber (Chinese Long) v2	cgycuB414
Cucsa.289220	Melon (DHL92) v3.5.1	cgymeB481
Cucsa.289220	Watermelon (Charleston Gray)	cgywcgB505
Cucsa.289220	Watermelon (97103) v1	cgywmB531