Cucsa.288910 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.288910
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA-dependent RNA polymerase family protein
Locationscaffold02698 : 406167 .. 412502 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGCCATGGCTGATCATTTCTTGGAAGTTTCTCTTCCGCCTTCGGTTGAGCAGTTTCTTCTTCATATATGTAAGCTACATGATCAGCCACTGCCGGATACTGAAGTGCTACGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCCCTCCATAAGATCTCCTGTAGCACTGTAAGGAACCTTAGCGGTTTTATTCTGCATTTGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTCTTGTCCTGTTTCTCAGCTTCAGAGTCCTTCAACTTGCTCTGTTTCTTTGCATCAAAGTCCTTCAACATTCTCTGTTTGTAGCGGCCAAGGTTCTTTGTTTTCCCTTTTTAGTGCCTCTGTTTTCGCTATTCTGATATAAGCATTCTTCCTACTCGTATGTTTGTTCTTAGAATCTTGCTGTTTTAGCATGATTTTATTTGTTTGGTCCCCAGATATTGGAATATTGTGCCAGTTGTTTATATTGACTACTTTTTGTAGGGCTAGGAACTGCTGAGAATGCAAGCTTACAGCCACCAACTCCAGAAAAGTCTGGAAGCTTTTCATCTTCGGTTTTGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGAAAGGCATTTTTATTATTGAGTTACATTGGAGGGTACACAATTTCTTTCAGTTATATTTGTTGTTGTGCTATTTTATATTGCTCTATGATGAAAATGACAGTTTCACCCCTTAATTCTTGTAGAGAAAGCCTTGAAAGGGTCACAACAGCAGACCAAATTCAAAGTCTAAGCCAATTAACGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATATGTTACAAATGAAGAACGACGAGTGGTAAATTTGATTATCATTTCCAATTGCTGTATGATTATGTTCTTTGATGCAAAAACAGCATGAGGAGATAAAAGTACAAACTGCCTTTCTTTCTAAAAGAGGTGCTTCTAGCTTTCAAAACAGATATCTCGATTGGGTGCTAAATGATCAATGGACCAACTACTAAAATGAAGTCAGAAGGTTCTGGCTTTTAATTGACTGCATGGAATTCTACTTTTAAAAATCAATGTTGTGTGTGTGTTTTGTTTGAGGGGTTCCAAAATTTCATTGATTAATGAAATGAATAGATCACCTATGATAAATTACAAGAAAGATTGCCAATTGCGTGATAAATGTTGTGGAAGTCTAGAATGTCAGACAAATCAAAGGCCATGGTCTTGCTTTCCTTCTATCTCTAAATTTTTCAATTGGGCAAGGCATGGATCCCCCATGTCATTTTTCCCTCTGTTACCTCTTTTAAAGCTTTGGAGTCCCCAGTTCTGTGGGCCTTGACCTCCCTCCTTATCGCTTTCAATTTTAAGTGTGCATTCTGAAAGTGAAGTTTCACATCTTCGATGATCTTTATTTGTCACTACTTTCATTTTTCCTACATGATGGGAGTTATTGAGCTTGAGCTCATCTTTCATCGGAGAATCATAGATGCAAACCAGGCACAAATTCTCAGCCAAAAATTAGAGTCAATGATTTATAAGGTTACAACTAACTGTTATTCAAGGCTATTTTGAATAATAAACCAGCTTCCATTTCATTAAATGAACGTATAAAAGAATGGTTGGGACTATAAAGTAAAAAAGAAAAGCCTGAATACAACCCAGTCTGAGATGTGATTTTATTGGTAGATCACATTGTTGAAAAAGAGACCATGGCTACTTTATGGGAACCAGGTTGAACGGTATTGATTTTGTAATTATCAGAACCTAATTTTGATGAACGTTTTGTTTTGTGAATCGTTAGTTGGTTAGGCTGGGAACTTGTTTCTGTGACTCATTCTGAGGTGTGAAACTTGTCTTTTTTTATCTATTCTCTATCTTTCTCAGTCTCTCCCTTCCTATCTCGTGCAGTATGTTGATTGGGATCGTAGGAAAACACACATTTACCACTGTCATGTTGCTTTGGATGGGAGTTGCAGGTTCAAGGTCAGTGTACTTCAGTAAACAATCATGGATAATATTGCTCATATGACACAACTACAATTTTTAAGTCATTGATATCCCCCTAGATAATATTCTGAAATGATAAACTATAAATCTTCGTTTTTCTATTCAGATTTTTGCAGCACAAAGATATAATTTTAAAGTATTGATCAGAAATTAAATTTACTGCAACATGGGCTTAAGTTTCTGAGTTCAGTAGGTATACAACATGGTATCGGAACAGGTCTTGTATTCAAACATCTGTTTCCTCCCTAATTAATTGTTTTATAACTATTTGTTGGATCTCATGTAAACTTTTAAGCCCACAAGTAATGGGTTTTATAGTATTGTTAAAAGATTAAATTTACCATCAAGTTAAGCATTGGTCTTTGGTTCAATGGTGATTTTACAATGCAGACAACAACAATATGTGGATAAAAATCTTGACTTGAGGGCTCTTTTGGTTTCTGCTAAAAAGCACGTAAAACTGGCAGGTTCAAGGTGCAAAGGTTGAACTTTGTCATGGGAATAATTGTATTTGTATATATTGGAAAGAAATATTTTAGAAAAGTTGTACCTCACAAAAGATAATCAAGAATCTCTCTGAGTGCATTTATCCAACTTTTAGTGAACTTTCTCTCTCTTTAGAATTTCCTCCATGCTTGCTTGATTACTAATTTTTGAGCCCACAAGAATTACAGGACTTGCATGTGAGATTAATTGTGAAGGTAAAAGAGGAGGTTGGGATTCTTTTCTATTTACTGTTATCTTGCATGTCAAACCTTTACCTGAAGTTGGCCCAGGTGACTACTTGGCAGATCCGCTCTCACCAAGATGAGTGATCACTGACCTCCAAAATCTCACATGTTAGCCTATGCTACCAAATTCTAAATTAGTTAGGAAGAAATAAGAATAACGTGGATGTAGTTTCACTACTATCAACGTAGTTATGGGTACATTGACTGTATGAAGAAGCCGGGAAGAAGTAATCATAAAACTATCAATGCCATGCCACATCTCTGGATTCTTAACTTTTGGTAGATAACCCCAAGTCTTATATGTCTAAAGACGAAGGTGAGGTGTGCATACTAGATATTATACAGACTAAATATGTAGAGCAACATTATGTATATGTCTAAATATTCGGAGGGTTTTTCTGCTGGTAAAACTCCTCTTTTTTTATTCCCTTCAATCTTCACCTCTTGTATAAGATCTTCACTATAGTTGTGGGTACATAAGTCGAAGTAATTTTAAAACTATCAATGCTATGCGCATCTCCGAATTCATAACTTTTGGTTGATAACCCCAAATGTTATATGTCTAAAGAGGGAGGTGAGTTGTGTATACTAGTCATTAGATAGACTAGATATATATAGAACAACCATATATATGTTTAAATAGTCGGAGGGTACTTTTTTTTTGCTGATAAAAACCTCTTTTTTTTATTCCCTTCTTTCTTCACCTCTTTGTATAAGATAATAGCAGTGGGTACAACATTGACAGTTCGAGAACTCTCAAGTTGAAGTAACTATGAAAATTGTTTGTATTGTAGAGAACCAAATAGTTGGTGATGGGAGGTGTGTTACTAGAAATAATAGACAAATTAACCATCATGGGTTGACCTAGTAGTTAGAAGAGACTGATGGGAGGTGTGTTTACTAAAAATAATATATACAAGTTAACTATAATGGGTTGGCCTAGTAGTTAAAGGGAGATAATCTCAATAAAATGGCTAAGAGGTTTGGTCAACTACTTAGGAATTAATTTCTTATGACTATCCTACTGATCAGGGTGCTTTGGGGGTGTCAACCTAGTTGAGATGTCCGGGTGGACCTACTGATACTCTCTCTCTTCCCCATTATTGGCTTCCCTATTATTCTCATTGTATAGCTCTCTTGGACTTTAAGTTTATTAATAATAAAGAAGCCTGTCTCCTTGTAAAAAAAAACAAAGAAATTTCCTACGATTTTCTTTGAGACCAAAATGTTGTAAGGTAAGGTAAGTTGTTTTATGAGATTAGTCGTGATGTGTGTAAGCTGACAAGACACTCACAAATATCCAAATATATGTATAGATAGATAGATAAATTATATAGAGCTACATCATAGATATGTCTAAAAAAAGGGTTTCATGTAGGGTAATTATGAAGTTCGATACCATTCCTTTGGCATGTAGTGCATCTTCTTTCTTTACTAAGCTTAGCTTTAACTTAACTGGCATGGAGTTTTAGCAGACACTAAATGATGCTAATCTTTCTTCTATAAATTTGTTCTTTTATCTTCCTCTTTTCTCCTTTAGCATTGCTGATTGAGATGGATGGACTGTATTGAAATAGATAGCCAACTTACTCAGTGCACCAAACCAAAATTCAGGAATCTTAGACATTCTCAGTGTGTACAACTCTTTTTTCTCCACAGGAATGGCTTTATACCAACCCTCTATATTTATACATGCTGTATGCAACAAAAAATTATTTGCTATTGTGTGAGTTGAATATTATCGGCAATGTCATTCACTGTTGTTGAAGAAGTTTTTGAGTTGCAGTTTCACTATAATTTGTCAGGGTCCCTTTTTGAACAATACAAAAACTCATCTGCAAAGGGTTTTAGGTGATGACAATGTTTTGATGGTCAAGTTTGCTGAAGACAAATCTGATACACCATTGTCAAACCATTCTGGTGGTTCCTTTTATGCTTATAGCAAGATTGCTAGAGATGGCATTCTTCTTGGATTGCGTCGATACCATTTTTTTGGTAAGTCTTTTTGATGCTTACAAACGAATTCCTTTGTTGTGCTTGTTTCTACACTCACCATTAAAAGTAAAGAGGCATTCCAGAAAACTTTTTTCAAATTATCATTGTTTGTTGCATCATGCATTGCAGCTTTCTTCCCGGATAATCAGATTGGGTTCAATGGTTAATTACATACATGAAAATCCAATGTGTATTACTAGCTAGTTAAATCTATTATCATAGACTTGGTTGTTTGTCAATATCTTTTTGTCATTGCACATGCATTAATATTACCTACTCGTGCTCTCCCTGGCAATATACTGTTGTCCACAATTCAATACACGTGCAATGGCATCAATACATTAGTAGAATGGGCCAAGGTCTTTGAGACAAATTGCCCTTTAGCTTTTCTATCTTCGCAGCTTATGCAGTATTTTTGCTACTGTCTGCATGTCATATTCTCATCAGACAAATGATTGAGTTTCAACATTTTAACATCACTTTTTGTTGCTATTACTGACTTGATCATTTTCTTATGTTTTTGTATATGCGTGTTGGGCTATTTTTTTCTTACTATATTTGTGTATATGGAATAGTTTTCAAAGATGGTGGGAAGGAGGAAAAAAAGAAGAATCCAACCACATCAGCTGTGAAGTGCTATTTTGTTCGAATGGAGTCAGATGCGTATATTGATAAGATTGAACCTTATAAATTATCAAATAGAACAGTTTTTGAAGCAAGGAGTCTTTTCATGCATGCACACATGGTGTCTAGTATAGCAAGCTACATGGCTAGGTATGCTGGCTATAGGACTTCTTATATTTTTTCTAGCAACTTCTATGTTATTGTCCTGAACGTTCTTAATTAATACTTATATTTTTATTTTGTAGGTTTTCACTCATTCTGTCGAAGACCATAAACCTGAAAATTGATTTGTCTACAGTAAATGTTCAAAGAATCGGGGATATACCCTGCAAGGTATGTTATTCTACCACTACTCCTTCTGCCTTCTGGTGGAGAGGAAGGGGTAAAACTGAAAAATGTTAATCTCTCTTATACTCCATCCTTCTCATCGTTATGATTATGGACTTTTTTGCTGCATATTCTATTTATAGCTTCTTATTTTGGTTTTTACCTTGCTGTAGGATATCTATGGCAATGTCATATATAGAGATGGAAAACCTCTTATACATACTGACGGAACAGGATTTATATCAGAGGACTTGGCTTTGGAGTGCCCTATGAATGTATTTAAAGGGCAGGCAAAGCATGATGCTGATCTTAAGGTTTGTGATTTCTTGTTAACTTATAATTAGAGAAAAAGGATAATTTTTTTTTCCAAACTTGATTTGATGTTTCAAATTTTCAATTAAATCAACCTGAAGCTAGAAATTAACAAGGACTTGTTTGGGTGGGAATTTAAAAACAAAAATTTGAAAACAAAGGATTCAAGAAAACAAAGTTGTTTTTTCATGTTTCAGGTATGTGTTTGAAAGTAGATTAAAAAGTTGGATTCTAATTTGAACAATAGTTTAGAGCGTGCTTGA

mRNA sequence

CTTTTGCCATGGCTGATCATTTCTTGGAAGTTTCTCTTCCGCCTTCGGTTGAGCAGTTTCTTCTTCATATATGTAAGCTACATGATCAGCCACTGCCGGATACTGAAGTGCTACGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCCCTCCATAAGATCTCCTGTAGCACTGTAAGGAACCTTAGCGGTTTTATTCTGCATTTGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTCTTGTCCTGTTTCTCAGCTTCAGAGTCCTTCAACTTGCTCTGTTTCTTTGCATCAAAGTCCTTCAACATTCTCTGTTTGTAGCGGCCAAGGGCTAGGAACTGCTGAGAATGCAAGCTTACAGCCACCAACTCCAGAAAAGTCTGGAAGCTTTTCATCTTCGGTTTTGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGAAAGGCATTTTTATTATTGAGTTACATTGGAGGAGAAAGCCTTGAAAGGGTCACAACAGCAGACCAAATTCAAAGTCTAAGCCAATTAACGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATATGTTACAAATGAAGAACGACGAGTGTCTCTCCCTTCCTATCTCGTGCAGTATGTTGATTGGGATCGTAGGAAAACACACATTTACCACTGTCATGTTGCTTTGGATGGGAGTTGCAGGTTCAAGGGTCCCTTTTTGAACAATACAAAAACTCATCTGCAAAGGGTTTTAGGTGATGACAATGTTTTGATGGTCAAGTTTGCTGAAGACAAATCTGATACACCATTGTCAAACCATTCTGGTGGTTCCTTTTATGCTTATAGCAAGATTGCTAGAGATGGCATTCTTCTTGGATTGCGTCGATACCATTTTTTTGTTTTCAAAGATGGTGGGAAGGAGGAAAAAAAGAAGAATCCAACCACATCAGCTGTGAAGTGCTATTTTGTTCGAATGGAGTCAGATGCGTATATTGATAAGATTGAACCTTATAAATTATCAAATAGAACAGTTTTTGAAGCAAGGAGTCTTTTCATGCATGCACACATGGTGTCTAGTATAGCAAGCTACATGGCTAGGTTTTCACTCATTCTGTCGAAGACCATAAACCTGAAAATTGATTTGTCTACAGTAAATGTTCAAAGAATCGGGGATATACCCTGCAAGGATATCTATGGCAATGTCATATATAGAGATGGAAAACCTCTTATACATACTGACGGAACAGGATTTATATCAGAGGACTTGGCTTTGGAGTGCCCTATGAATGTATTTAAAGGGCAGGCAAAGCATGATGCTGATCTTAAGattaaaaagttggattctaatttgaacaatagtttagagcgtgcttga

Coding sequence (CDS)

CTTTTGCCATGGCTGATCATTTCTTGGAAGTTTCTCTTCCGCCTTCGGTTGAGCAGTTTCTTCTTCATATATGTAAGCTACATGATCAGCCACTGCCGGATACTGAAGTGCTACGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCCCTCCATAAGATCTCCTGTAGCACTGTAAGGAACCTTAGCGGTTTTATTCTGCATTTGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTCTTGTCCTGTTTCTCAGCTTCAGAGTCCTTCAACTTGCTCTGTTTCTTTGCATCAAAGTCCTTCAACATTCTCTGTTTGTAGCGGCCAAGGGCTAGGAACTGCTGAGAATGCAAGCTTACAGCCACCAACTCCAGAAAAGTCTGGAAGCTTTTCATCTTCGGTTTTGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGAAAGGCATTTTTATTATTGAGTTACATTGGAGGAGAAAGCCTTGAAAGGGTCACAACAGCAGACCAAATTCAAAGTCTAAGCCAATTAACGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATATGTTACAAATGAAGAACGACGAGTGTCTCTCCCTTCCTATCTCGTGCAGTATGTTGATTGGGATCGTAGGAAAACACACATTTACCACTGTCATGTTGCTTTGGATGGGAGTTGCAGGTTCAAGGGTCCCTTTTTGAACAATACAAAAACTCATCTGCAAAGGGTTTTAGGTGATGACAATGTTTTGATGGTCAAGTTTGCTGAAGACAAATCTGATACACCATTGTCAAACCATTCTGGTGGTTCCTTTTATGCTTATAGCAAGATTGCTAGAGATGGCATTCTTCTTGGATTGCGTCGATACCATTTTTTTGTTTTCAAAGATGGTGGGAAGGAGGAAAAAAAGAAGAATCCAACCACATCAGCTGTGAAGTGCTATTTTGTTCGAATGGAGTCAGATGCGTATATTGATAAGATTGAACCTTATAAATTATCAAATAGAACAGTTTTTGAAGCAAGGAGTCTTTTCATGCATGCACACATGGTGTCTAGTATAGCAAGCTACATGGCTAGGTTTTCACTCATTCTGTCGAAGACCATAAACCTGAAAATTGATTTGTCTACAGTAAATGTTCAAAGAATCGGGGATATACCCTGCAAGGATATCTATGGCAATGTCATATATAGAGATGGAAAACCTCTTATACATACTGACGGAACAGGATTTATATCAGAGGACTTGGCTTTGGAGTGCCCTATGAATGTATTTAAAGGGCAGGCAAAGCATGATGCTGATCTTAAGATTAAAAAGTTGGATTCTAATTTGAACAATAGTTTAGAGCGTGCTTGA

Protein sequence

FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKIKKLDSNLNNSLERA*
Homology
[Close]
BLAST of Cucsa.288910 vs. Swiss-Prot
Match: RDR3_ARATH (Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana GN=RDR3 PE=3 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 3.5e-85
Identity = 199/467 (42.61%), Postives = 275/467 (58.89%), Query Frame = 1 

Query: 9   EVSLPPSVEQFLLHICKLHDQPLP-DTEVLRALASVGEVAALDALHKI-SCSTVRNLSGF 68
           E++L  SVE  L  I + H+  LP   E  R L+S+ E  AL+ L K+ +   ++ L G 
Sbjct: 14  EIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGL 73

Query: 69  ILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGL 128
           I++ V+            R+SP +SP        +QSP T        P+  S  + Q +
Sbjct: 74  IMYFVKGTVTVDGSP---RLSPGESP--------VQSPRT--------PAKKSCRASQDV 133

Query: 129 GTAENASLQPPTP------EKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 188
               +  L+ P+P      E  GS          I   +ALGELEF+KAFLLLSYIGGES
Sbjct: 134 ----SLDLETPSPKFMKREENGGS--------KYIPPLLALGELEFKKAFLLLSYIGGES 193

Query: 189 L-ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTH 248
           L E V + DQI+    L M  +E  VW   G++Y + +ERR  L        + D   TH
Sbjct: 194 LVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPL--------EGDSGMTH 253

Query: 249 IYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAY 308
            Y CHVA DGS +FKG  L NT THL +VLGDDNVL VKF  DK    +  +    +  Y
Sbjct: 254 YYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKF--DKV-LGVETYCNDLYSTY 313

Query: 309 SKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSN 368
             IA++GI++GLRRY FFVFKDGGKEEKKK+ +T  VKCYF+R +S A ID   PY  + 
Sbjct: 314 KGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAG 373

Query: 369 RTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYG-N 428
           +++ EAR  FMH + +SS+ +YM+RFSLILSKT  L++D++ +  ++I DI C D    +
Sbjct: 374 KSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKD 433

Query: 429 VIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKIKKLD 466
           V+ ++GKP IH+DGTG+ISEDLA  CP+N+FKG++    +++ K L+
Sbjct: 434 VLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLN 438

[Close]
BLAST of Cucsa.288910 vs. Swiss-Prot
Match: RDR5_ARATH (Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana GN=RDR5 PE=2 SV=2)

HSP 1 Score: 298.1 bits (762), Expect = 1.7e-79
Identity = 180/452 (39.82%), Postives = 257/452 (56.86%), Query Frame = 1 

Query: 8   LEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFI 67
           + ++L   +E  L +I + H+    + E  + L+S+ E    + + K+        +G I
Sbjct: 8   IRIALSGRIETALENIYRKHNLTPINDETRQRLSSIPENLGFELVRKVFSLQ----AGLI 67

Query: 68  LHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLG 127
            +L       S  N+ V  + +  P++S       SPS   VS                 
Sbjct: 68  YNL--DSFIVSKVNQAVSFTGYPQPANSL------SPSGRHVSRVLQ------------- 127

Query: 128 TAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTA 187
             E  S+    P      S        I Q VALGELEF+K FLLLSYI G+ + +V TA
Sbjct: 128 --EEMSVDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITA 187

Query: 188 DQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYHCHVAL 247
           D+I+    L M ++E  VW   G+ Y   ++RR+         + WD  KTH Y C+VA 
Sbjct: 188 DEIRLWKDLPMVEYEAAVWDRLGRHYCPQKDRRM---------LQWDSGKTHYYQCNVAP 247

Query: 248 DGSCRFK------GPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSK 307
           +GS  FK      GP L +T THL +VLGDDNVL VKFA+ +  +  S +S   ++ Y  
Sbjct: 248 NGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSS--STYSIDHYFTYKG 307

Query: 308 IARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRT 367
           IA++GI++GLRRY FFVFKDGGKEEKKK+ +T  VKCYF+R +S A+ D   PY L+ ++
Sbjct: 308 IAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKS 367

Query: 368 VFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYG-NVI 427
           ++EAR  FMH H   ++A+YMARFSLILSKT  L++D++ +   +I DI C D  G +V+
Sbjct: 368 IYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVL 421

Query: 428 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQ 453
            ++ KP IH+DGTG+ISEDLA  CP+N+FKG+
Sbjct: 428 DKNKKPCIHSDGTGYISEDLARMCPLNIFKGK 421

[Close]
BLAST of Cucsa.288910 vs. Swiss-Prot
Match: RDR3_ORYSJ (Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica GN=RDR3 PE=2 SV=2)

HSP 1 Score: 296.2 bits (757), Expect = 6.4e-79
Identity = 164/343 (47.81%), Postives = 214/343 (62.39%), Query Frame = 1 

Query: 122 SGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESL 181
           +G  +      +  P  P  +   + + L  A   Q +AL EL FRK F++ +Y+  E +
Sbjct: 256 AGPSVSPPSPITAMPQNPTTTCHTTDNALREAASPQMLALEELGFRKIFMVFAYLASEKI 315

Query: 182 ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIY 241
           E V + D I+SL  L+M +FE ++W+ FG KY+   +R  +L S        D   T +Y
Sbjct: 316 ENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASDRAKNLDS--------DPGMTKVY 375

Query: 242 HCHVALDGSCR---FKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYA 301
           HC+VA+ G      FKGP++ NT+THLQ+V+GDDNVL+VKF    SDT     +  S Y 
Sbjct: 376 HCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKLSDTK----TDFSTYC 435

Query: 302 --YSKIARDGILLGLRRYHFFVFKDGGKEEK-------KKNPTTSAVKCYFVRMESDAYI 361
             Y K+A DGI+LGLRRY FFV+KDGGKEEK        KN  TS V CYFVR ES   +
Sbjct: 436 EHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPVMCYFVRTESGWNM 495

Query: 362 DKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGD 421
           D  EPY LS RTV +AR LFMH     ++A YMARF+LILSKTI    DLS V V+RI D
Sbjct: 496 D--EPYILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITWDADLSAVYVRRIKD 555

Query: 422 IPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQ 453
            PC D +GNV+++D +PLIHTDGTG +S DLAL CP ++FKG+
Sbjct: 556 EPCMDRHGNVVHKDQEPLIHTDGTGLVSVDLALNCPTSIFKGK 584

[Close]
BLAST of Cucsa.288910 vs. Swiss-Prot
Match: RDR4_ARATH (Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana GN=RDR4 PE=3 SV=2)

HSP 1 Score: 287.7 bits (735), Expect = 2.3e-76
Identity = 163/351 (46.44%), Postives = 215/351 (61.25%), Query Frame = 1 

Query: 113 QSPSTFSVCSGQGLGTAENASLQPPTPEKSGSF--SSSVLDRARISQFVALGELEFRKAF 172
           +SP  F    G+    A  A +     + S  F       +   IS  +ALGELEF+KAF
Sbjct: 99  ESPVQFPRTPGKKSCRASQAEVSLDREDPSPKFLRGDENGESKHISLLLALGELEFKKAF 158

Query: 173 LLLSYIGGESLERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQY 232
           LLL+Y+GG+SL  V + D+I+    L M  +E  VW   G+    NEER           
Sbjct: 159 LLLTYLGGKSLGEVISGDEIRQWKDLPMVAYERAVWFKLGQ----NEER---------MQ 218

Query: 233 VDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSN 292
           ++ D  KTH Y CHVA DGS R KG FL NT THL +VLGDDNVL V+F +   +   S 
Sbjct: 219 LESDSGKTHYYQCHVAPDGSYRLKGYFLENTGTHLHKVLGDDNVLTVRFDQLPKE---ST 278

Query: 293 HSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYID 352
           +    +  Y +IA++GI++GLRRY FFVFKDGGK EKKK  +T  VKCYF+R  S A  D
Sbjct: 279 YCDNPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSD 338

Query: 353 KIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDI 412
              PY LS  ++ EAR  FMH H + S A+YMARFSLILSKT  L++D++ + V +I DI
Sbjct: 339 MENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDI 398

Query: 413 PCKDIYGN-VIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
            C D   N V+ ++GKP IH+DGTG+ISEDLA  CP+N+FKG++    +++
Sbjct: 399 HCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQ 433

[Close]
BLAST of Cucsa.288910 vs. Swiss-Prot
Match: RDR4_ORYSJ (Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica GN=RDR4 PE=2 SV=2)

HSP 1 Score: 262.7 bits (670), Expect = 7.8e-69
Identity = 174/472 (36.86%), Postives = 244/472 (51.69%), Query Frame = 1 

Query: 25  KLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFILHLVRKDSCASPQNKMV 84
           +LHD       + R +  +   A      +IS   ++N    +          SP +  V
Sbjct: 137 RLHDNGGSVGHIARVVPDLANPAVGSPYGRISSVLLQN-QNCVEGYTPSRGMVSPASNQV 196

Query: 85  RVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPST------FSVCSGQGLGTAENAS----L 144
               H+ PS      ++ SP    VS  +  ST       S C     G + +      +
Sbjct: 197 GSPGHRMPSGLQRHMEIDSPIQPIVSTPERVSTPSPVRDLSRCVENMAGPSGSPPCPIWV 256

Query: 145 QPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIG--------------GES 204
            P  P      +++VL      Q +ALGELEFRK F++ +Y+                  
Sbjct: 257 MPQIPPAICPDTTNVLREVVSPQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSK 316

Query: 205 LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHI 264
           +E V + D I+SL  ++M +FE  +W  FG   +++ +R  +L S            + +
Sbjct: 317 IEDVLSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDS--------GPGMSKV 376

Query: 265 YHCHVALDGSCR---FKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTP--LSNHSGGS 324
           YHC+V + G      FKGP++ N +THLQ+VLGDDNVL+VKF E  SDT   LS +    
Sbjct: 377 YHCNVEIRGGTVVKIFKGPYIENRRTHLQKVLGDDNVLVVKFMEISSDTETDLSTY---- 436

Query: 325 FYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPT--------TSAVKCYFVRMESDA 384
              Y K+A +GI+LGLR Y FF++KDGGKE K K           TS+V+CYFVR ES  
Sbjct: 437 LEHYHKVAEEGIVLGLRCYRFFLYKDGGKENKMKEENREEENKKCTSSVRCYFVRTESGW 496

Query: 385 YIDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRI 444
            +D  EPY LS RT+ +AR LFMH   V ++A YM RF+LI+SKTI L +DLS V V+ I
Sbjct: 497 NMD--EPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEVLVKLI 556

Query: 445 GDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADL 460
            D PC D +G  ++RDG+ LIHTDGTG ISEDLA +C  +  KG+     D+
Sbjct: 557 DDEPCLDEHGKEVFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDI 593

[Close]
BLAST of Cucsa.288910 vs. TrEMBL
Match: A0A0A0LYP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G574860 PE=4 SV=1)

HSP 1 Score: 901.4 bits (2328), Expect = 4.8e-259
Identity = 452/460 (98.26%), Postives = 452/460 (98.26%), Query Frame = 1 

Query: 1   FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV 60
           FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV
Sbjct: 49  FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV 108

Query: 61  RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV 120
           RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV
Sbjct: 109 RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV 168

Query: 121 CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 180
           CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES
Sbjct: 169 CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 228

Query: 181 LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHI 240
           LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV        YVDWDRRKTHI
Sbjct: 229 LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV--------YVDWDRRKTHI 288

Query: 241 YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS 300
           YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS
Sbjct: 289 YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS 348

Query: 301 KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR 360
           KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR
Sbjct: 349 KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR 408

Query: 361 TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI 420
           TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI
Sbjct: 409 TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI 468

Query: 421 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
           YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK
Sbjct: 469 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 500

[Close]
BLAST of Cucsa.288910 vs. TrEMBL
Match: V4UPX6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007331mg PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.9e-114
Identity = 232/471 (49.26%), Postives = 307/471 (65.18%), Query Frame = 1 

Query: 10  VSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVR-NLSGFIL 69
           VSLP SVEQ +  I    ++  PD    R+LAS+GE AALD L  I+   ++ + SG+I 
Sbjct: 13  VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72

Query: 70  HLVRKDSCASPQNKMVRVSP-----HQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSG 129
           +LV+K +      K V  SP     ++SP +   V  L  P      + QSP        
Sbjct: 73  YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSP-------- 132

Query: 130 QGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLER 189
                    + Q P      S S ++  RA I Q+VALGELEFRKAFL+LSYIG  SLE 
Sbjct: 133 --------VADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEE 192

Query: 190 VTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYHC 249
           V TAD+I+ +  L M +FE EVW+  G+K ++ E+RR+SL         WD  KTH+YHC
Sbjct: 193 VITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLK--------WDSGKTHMYHC 252

Query: 250 HVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIA 309
           H++  G+C FKGP+LN T+THLQR LGDDN+L+VKF E+      SN+   S+  Y++IA
Sbjct: 253 HISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIA 312

Query: 310 RDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVF 369
           R+GIL+GLR YHFFVFKDGGKEEKKK+P+TS VKCYFVRMES A+ID    Y LS +TV 
Sbjct: 313 REGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVH 372

Query: 370 EARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRD 429
           EAR +FMH   VSS+A+YM+R SLILSKT+ L++D S +N++RI D PC+D  GNV+Y+D
Sbjct: 373 EARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKD 432

Query: 430 GKPLIHTDGTGFISEDLALECPMNVFKGQAKHD----ADLKIKKLDSNLNN 471
           G+ LIHTDGTGFISEDLAL+CP  V+K +  +D      +  K+L++N ++
Sbjct: 433 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSD 459

[Close]
BLAST of Cucsa.288910 vs. TrEMBL
Match: A0A067FTJ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001771mg PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.9e-114
Identity = 232/471 (49.26%), Postives = 307/471 (65.18%), Query Frame = 1 

Query: 10  VSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVR-NLSGFIL 69
           VSLP SVEQ +  I    ++  PD    R+LAS+GE AALD L  I+   ++ + SG+I 
Sbjct: 13  VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72

Query: 70  HLVRKDSCASPQNKMVRVSP-----HQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSG 129
           +LV+K +      K V  SP     ++SP +   V  L  P      + QSP        
Sbjct: 73  YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSP-------- 132

Query: 130 QGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLER 189
                    + Q P      S S ++  RA I Q+VALGELEFRKAFL+LSYIG  SLE 
Sbjct: 133 --------VADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEE 192

Query: 190 VTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYHC 249
           V TAD+I+ +  L M +FE EVW+  G+K ++ E+RR+SL         WD  KTH+YHC
Sbjct: 193 VITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLK--------WDSGKTHMYHC 252

Query: 250 HVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIA 309
           H++  G+C FKGP+LN T+THLQR LGDDN+L+VKF E+      SN+   S+  Y++IA
Sbjct: 253 HISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIA 312

Query: 310 RDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVF 369
           R+GIL+GLR YHFFVFKDGGKEEKKK+P+TS VKCYFVRMES A+ID    Y LS +TV 
Sbjct: 313 REGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVH 372

Query: 370 EARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRD 429
           EAR +FMH   VSS+A+YM+R SLILSKT+ L++D S +N++RI D PC+D  GNV+Y+D
Sbjct: 373 EARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKD 432

Query: 430 GKPLIHTDGTGFISEDLALECPMNVFKGQAKHD----ADLKIKKLDSNLNN 471
           G+ LIHTDGTGFISEDLAL+CP  V+K +  +D      +  K+L++N ++
Sbjct: 433 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSD 459

[Close]
BLAST of Cucsa.288910 vs. TrEMBL
Match: V4UEL1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007331mg PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 4.3e-114
Identity = 230/466 (49.36%), Postives = 305/466 (65.45%), Query Frame = 1 

Query: 10  VSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVR-NLSGFIL 69
           VSLP SVEQ +  I    ++  PD    R+LAS+GE AALD L  I+   ++ + SG+I 
Sbjct: 13  VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72

Query: 70  HLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLGT 129
           +LV+K +      K V  SP     +  PV+        +V L   P  + V        
Sbjct: 73  YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVT------VTTVRLLNLPQDYVVKQSP---- 132

Query: 130 AENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAD 189
               + Q P      S S ++  RA I Q+VALGELEFRKAFL+LSYIG  SLE V TAD
Sbjct: 133 ---VADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITAD 192

Query: 190 QIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYHCHVALD 249
           +I+ +  L M +FE EVW+  G+K ++ E+RR+SL         WD  KTH+YHCH++  
Sbjct: 193 EIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLK--------WDSGKTHMYHCHISTK 252

Query: 250 GSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGIL 309
           G+C FKGP+LN T+THLQR LGDDN+L+VKF E+      SN+   S+  Y++IAR+GIL
Sbjct: 253 GNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGIL 312

Query: 310 LGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSL 369
           +GLR YHFFVFKDGGKEEKKK+P+TS VKCYFVRMES A+ID    Y LS +TV EAR +
Sbjct: 313 VGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM 372

Query: 370 FMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLI 429
           FMH   VSS+A+YM+R SLILSKT+ L++D S +N++RI D PC+D  GNV+Y+DG+ LI
Sbjct: 373 FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALI 432

Query: 430 HTDGTGFISEDLALECPMNVFKGQAKHD----ADLKIKKLDSNLNN 471
           HTDGTGFISEDLAL+CP  V+K +  +D      +  K+L++N ++
Sbjct: 433 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSD 457

[Close]
BLAST of Cucsa.288910 vs. TrEMBL
Match: W9QYQ2_9ROSA (Putative RNA-dependent RNA polymerase 4 OS=Morus notabilis GN=L484_010892 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 4.1e-109
Identity = 236/470 (50.21%), Postives = 299/470 (63.62%), Query Frame = 1 

Query: 8   LEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKIS-CST-VRNLSG 67
           +EV LP SV + L  IC    QP PD E+ R LAS GE  AL  L  I+ C T +++L G
Sbjct: 14  IEVPLPRSVLELLERICAERSQPPPDAELRRKLASAGEDEALRVLRTIADCKTKIKSLHG 73

Query: 68  FILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQG 127
           F+ +L+R+              P  S  S  PV +   PS+       SP TF+   G  
Sbjct: 74  FVTYLLRQQP----------PPPSLSSPSRSPVPENSRPSS-------SPGTFANSQG-- 133

Query: 128 LGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLERVT 187
                                      A  +Q  ALGELEFRK FL+L+YIG   L+ VT
Sbjct: 134 ---------------------------ANGAQMEALGELEFRKQFLILNYIGRNELQSVT 193

Query: 188 TADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYHCHV 247
           TA++I+SL  L+M +FE +VW+ FG+KYV  E+RR+        Y DWD  KTHIY CHV
Sbjct: 194 TAEEIRSLKNLSMVQFEKQVWQRFGEKYVDQEDRRI--------YHDWDSGKTHIYRCHV 253

Query: 248 ALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYA-YSKIAR 307
           + +GS RFKGP+L   K HLQ+VLGDDNVLMVKFAE++++   S  S   +YA YSKI R
Sbjct: 254 SPEGSFRFKGPYLEKPKKHLQKVLGDDNVLMVKFAEEEAER-FSIGSRDHYYAGYSKICR 313

Query: 308 DGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFE 367
           +GIL+GLRRY FFVFKDGGKEEKKK+PT+S VKC+F+R+ SDA ID+   Y LS RT+ E
Sbjct: 314 EGILVGLRRYCFFVFKDGGKEEKKKDPTSSPVKCFFIRIHSDACIDQNVSYILSGRTISE 373

Query: 368 ARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDG 427
           AR LFMHAH VSS+++YM RFSLILS T++LKIDLS+VN+  I D  C+D  GN IYRDG
Sbjct: 374 ARKLFMHAHTVSSVSNYMIRFSLILSNTLSLKIDLSSVNIDIIEDEYCQDESGNPIYRDG 428

Query: 428 KPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKI-KKLDSNLNNSLE 474
           KPLI+TDGTGFISEDLAL CP N+ K +  +D +++I    D ++ N  E
Sbjct: 434 KPLIYTDGTGFISEDLALLCPKNLEKWKRINDNNIEIMHNQDGHVENVAE 428

[Close]
BLAST of Cucsa.288910 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 317.0 bits (811), Expect = 2.0e-86
Identity = 199/467 (42.61%), Postives = 275/467 (58.89%), Query Frame = 1 

Query: 9   EVSLPPSVEQFLLHICKLHDQPLP-DTEVLRALASVGEVAALDALHKI-SCSTVRNLSGF 68
           E++L  SVE  L  I + H+  LP   E  R L+S+ E  AL+ L K+ +   ++ L G 
Sbjct: 14  EIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGL 73

Query: 69  ILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGL 128
           I++ V+            R+SP +SP        +QSP T        P+  S  + Q +
Sbjct: 74  IMYFVKGTVTVDGSP---RLSPGESP--------VQSPRT--------PAKKSCRASQDV 133

Query: 129 GTAENASLQPPTP------EKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 188
               +  L+ P+P      E  GS          I   +ALGELEF+KAFLLLSYIGGES
Sbjct: 134 ----SLDLETPSPKFMKREENGGS--------KYIPPLLALGELEFKKAFLLLSYIGGES 193

Query: 189 L-ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTH 248
           L E V + DQI+    L M  +E  VW   G++Y + +ERR  L        + D   TH
Sbjct: 194 LVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPL--------EGDSGMTH 253

Query: 249 IYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAY 308
            Y CHVA DGS +FKG  L NT THL +VLGDDNVL VKF  DK    +  +    +  Y
Sbjct: 254 YYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKF--DKV-LGVETYCNDLYSTY 313

Query: 309 SKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSN 368
             IA++GI++GLRRY FFVFKDGGKEEKKK+ +T  VKCYF+R +S A ID   PY  + 
Sbjct: 314 KGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAG 373

Query: 369 RTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYG-N 428
           +++ EAR  FMH + +SS+ +YM+RFSLILSKT  L++D++ +  ++I DI C D    +
Sbjct: 374 KSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKD 433

Query: 429 VIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKIKKLD 466
           V+ ++GKP IH+DGTG+ISEDLA  CP+N+FKG++    +++ K L+
Sbjct: 434 VLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLN 438

[Close]
BLAST of Cucsa.288910 vs. TAIR10
Match: AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 298.1 bits (762), Expect = 9.5e-81
Identity = 180/452 (39.82%), Postives = 257/452 (56.86%), Query Frame = 1 

Query: 8   LEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFI 67
           + ++L   +E  L +I + H+    + E  + L+S+ E    + + K+        +G I
Sbjct: 8   IRIALSGRIETALENIYRKHNLTPINDETRQRLSSIPENLGFELVRKVFSLQ----AGLI 67

Query: 68  LHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLG 127
            +L       S  N+ V  + +  P++S       SPS   VS                 
Sbjct: 68  YNL--DSFIVSKVNQAVSFTGYPQPANSL------SPSGRHVSRVLQ------------- 127

Query: 128 TAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTA 187
             E  S+    P      S        I Q VALGELEF+K FLLLSYI G+ + +V TA
Sbjct: 128 --EEMSVDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITA 187

Query: 188 DQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYHCHVAL 247
           D+I+    L M ++E  VW   G+ Y   ++RR+         + WD  KTH Y C+VA 
Sbjct: 188 DEIRLWKDLPMVEYEAAVWDRLGRHYCPQKDRRM---------LQWDSGKTHYYQCNVAP 247

Query: 248 DGSCRFK------GPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSK 307
           +GS  FK      GP L +T THL +VLGDDNVL VKFA+ +  +  S +S   ++ Y  
Sbjct: 248 NGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSS--STYSIDHYFTYKG 307

Query: 308 IARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRT 367
           IA++GI++GLRRY FFVFKDGGKEEKKK+ +T  VKCYF+R +S A+ D   PY L+ ++
Sbjct: 308 IAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKS 367

Query: 368 VFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYG-NVI 427
           ++EAR  FMH H   ++A+YMARFSLILSKT  L++D++ +   +I DI C D  G +V+
Sbjct: 368 IYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVL 421

Query: 428 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQ 453
            ++ KP IH+DGTG+ISEDLA  CP+N+FKG+
Sbjct: 428 DKNKKPCIHSDGTGYISEDLARMCPLNIFKGK 421

[Close]
BLAST of Cucsa.288910 vs. TAIR10
Match: AT2G19920.1 (AT2G19920.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-77
Identity = 163/351 (46.44%), Postives = 215/351 (61.25%), Query Frame = 1 

Query: 113 QSPSTFSVCSGQGLGTAENASLQPPTPEKSGSF--SSSVLDRARISQFVALGELEFRKAF 172
           +SP  F    G+    A  A +     + S  F       +   IS  +ALGELEF+KAF
Sbjct: 99  ESPVQFPRTPGKKSCRASQAEVSLDREDPSPKFLRGDENGESKHISLLLALGELEFKKAF 158

Query: 173 LLLSYIGGESLERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQY 232
           LLL+Y+GG+SL  V + D+I+    L M  +E  VW   G+    NEER           
Sbjct: 159 LLLTYLGGKSLGEVISGDEIRQWKDLPMVAYERAVWFKLGQ----NEER---------MQ 218

Query: 233 VDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSN 292
           ++ D  KTH Y CHVA DGS R KG FL NT THL +VLGDDNVL V+F +   +   S 
Sbjct: 219 LESDSGKTHYYQCHVAPDGSYRLKGYFLENTGTHLHKVLGDDNVLTVRFDQLPKE---ST 278

Query: 293 HSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYID 352
           +    +  Y +IA++GI++GLRRY FFVFKDGGK EKKK  +T  VKCYF+R  S A  D
Sbjct: 279 YCDNPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSD 338

Query: 353 KIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDI 412
              PY LS  ++ EAR  FMH H + S A+YMARFSLILSKT  L++D++ + V +I DI
Sbjct: 339 MENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDI 398

Query: 413 PCKDIYGN-VIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
            C D   N V+ ++GKP IH+DGTG+ISEDLA  CP+N+FKG++    +++
Sbjct: 399 HCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQ 433

[Close]
BLAST of Cucsa.288910 vs. NCBI nr
Match: gi|778662744|ref|XP_011659950.1| (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 901.4 bits (2328), Expect = 6.9e-259
Identity = 452/460 (98.26%), Postives = 452/460 (98.26%), Query Frame = 1 

Query: 1   FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV 60
           FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV
Sbjct: 49  FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV 108

Query: 61  RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV 120
           RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV
Sbjct: 109 RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV 168

Query: 121 CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 180
           CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES
Sbjct: 169 CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 228

Query: 181 LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHI 240
           LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV        YVDWDRRKTHI
Sbjct: 229 LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV--------YVDWDRRKTHI 288

Query: 241 YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS 300
           YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS
Sbjct: 289 YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS 348

Query: 301 KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR 360
           KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR
Sbjct: 349 KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR 408

Query: 361 TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI 420
           TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI
Sbjct: 409 TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI 468

Query: 421 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
           YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK
Sbjct: 469 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 500

[Close]
BLAST of Cucsa.288910 vs. NCBI nr
Match: gi|778662741|ref|XP_011659949.1| (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 901.4 bits (2328), Expect = 6.9e-259
Identity = 452/460 (98.26%), Postives = 452/460 (98.26%), Query Frame = 1 

Query: 1   FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV 60
           FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV
Sbjct: 49  FAMADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTV 108

Query: 61  RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV 120
           RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV
Sbjct: 109 RNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSV 168

Query: 121 CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 180
           CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES
Sbjct: 169 CSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGES 228

Query: 181 LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHI 240
           LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV        YVDWDRRKTHI
Sbjct: 229 LERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV--------YVDWDRRKTHI 288

Query: 241 YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS 300
           YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS
Sbjct: 289 YHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS 348

Query: 301 KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR 360
           KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR
Sbjct: 349 KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR 408

Query: 361 TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI 420
           TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI
Sbjct: 409 TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI 468

Query: 421 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
           YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK
Sbjct: 469 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 500

[Close]
BLAST of Cucsa.288910 vs. NCBI nr
Match: gi|778662747|ref|XP_011659951.1| (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X3 [Cucumis sativus])

HSP 1 Score: 897.5 bits (2318), Expect = 1.0e-257
Identity = 450/458 (98.25%), Postives = 450/458 (98.25%), Query Frame = 1 

Query: 3   MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRN 62
           MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRN
Sbjct: 1   MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRN 60

Query: 63  LSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCS 122
           LSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCS
Sbjct: 61  LSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCS 120

Query: 123 GQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLE 182
           GQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLE
Sbjct: 121 GQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLE 180

Query: 183 RVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIYH 242
           RVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV        YVDWDRRKTHIYH
Sbjct: 181 RVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRV--------YVDWDRRKTHIYH 240

Query: 243 CHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKI 302
           CHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKI
Sbjct: 241 CHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKI 300

Query: 303 ARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTV 362
           ARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTV
Sbjct: 301 ARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTV 360

Query: 363 FEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYR 422
           FEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYR
Sbjct: 361 FEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYR 420

Query: 423 DGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
           DGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK
Sbjct: 421 DGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 450

[Close]
BLAST of Cucsa.288910 vs. NCBI nr
Match: gi|659099783|ref|XP_008450774.1| (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo])

HSP 1 Score: 832.0 bits (2148), Expect = 5.2e-238
Identity = 422/459 (91.94%), Postives = 431/459 (93.90%), Query Frame = 1 

Query: 3   MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VR 62
           MADHFLEVSLPPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VR
Sbjct: 1   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 63  NLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVC 122
           NLSGFILH+VRKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFSV 
Sbjct: 61  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 123 SGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESL 182
           SGQGLGTAENAS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121 SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 183 ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIY 242
           ERVTTA+QIQSLSQL MEKFEDEVWKIFGKKY+TNEERRV        YVDWDRRKTHIY
Sbjct: 181 ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV--------YVDWDRRKTHIY 240

Query: 243 HCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSK 302
           HC+VALDGS RFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDT L NH+GGSFY Y+K
Sbjct: 241 HCYVALDGSYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYVYNK 300

Query: 303 IARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRT 362
           IARDGILLGLRRY FFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAY+DKIEPYKLSNRT
Sbjct: 301 IARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRT 360

Query: 363 VFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIY 422
           VFEARSLFMHAHMVSSIASYMARFSLILSKTI LKIDLSTV VQRIGDIPCKDIYGNVIY
Sbjct: 361 VFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIY 420

Query: 423 RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
           RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK
Sbjct: 421 RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 451

[Close]
BLAST of Cucsa.288910 vs. NCBI nr
Match: gi|659099785|ref|XP_008450775.1| (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo])

HSP 1 Score: 832.0 bits (2148), Expect = 5.2e-238
Identity = 422/459 (91.94%), Postives = 431/459 (93.90%), Query Frame = 1 

Query: 3   MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VR 62
           MADHFLEVSLPPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VR
Sbjct: 1   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 63  NLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVC 122
           NLSGFILH+VRKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFSV 
Sbjct: 61  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 123 SGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESL 182
           SGQGLGTAENAS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121 SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 183 ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVSLPSYLVQYVDWDRRKTHIY 242
           ERVTTA+QIQSLSQL MEKFEDEVWKIFGKKY+TNEERRV        YVDWDRRKTHIY
Sbjct: 181 ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV--------YVDWDRRKTHIY 240

Query: 243 HCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSK 302
           HC+VALDGS RFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDT L NH+GGSFY Y+K
Sbjct: 241 HCYVALDGSYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYVYNK 300

Query: 303 IARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRT 362
           IARDGILLGLRRY FFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAY+DKIEPYKLSNRT
Sbjct: 301 IARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRT 360

Query: 363 VFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIY 422
           VFEARSLFMHAHMVSSIASYMARFSLILSKTI LKIDLSTV VQRIGDIPCKDIYGNVIY
Sbjct: 361 VFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIY 420

Query: 423 RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 461
           RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK
Sbjct: 421 RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 451

The following BLAST results are available for this feature:
BLAST of Cucsa.288910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDR3_ARATH3.5e-8542.61Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana GN=RDR3 PE=3 SV=... [more]
RDR5_ARATH1.7e-7939.82Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana GN=RDR5 PE=2 SV=... [more]
RDR3_ORYSJ6.4e-7947.81Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica GN=RDR3 ... [more]
RDR4_ARATH2.3e-7646.44Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana GN=RDR4 PE=3 SV=... [more]
RDR4_ORYSJ7.8e-6936.86Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica GN=RDR4 ... [more]
BLAST of Cucsa.288910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYP8_CUCSA4.8e-25998.26Uncharacterized protein OS=Cucumis sativus GN=Csa_1G574860 PE=4 SV=1[more]
V4UPX6_9ROSI1.9e-11449.26Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007331mg PE=4 SV=1[more]
A0A067FTJ1_CITSI1.9e-11449.26Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001771mg PE=4 SV=1[more]
V4UEL1_9ROSI4.3e-11449.36Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007331mg PE=4 SV=1[more]
W9QYQ2_9ROSA4.1e-10950.21Putative RNA-dependent RNA polymerase 4 OS=Morus notabilis GN=L484_010892 PE=4 S... [more]
BLAST of Cucsa.288910 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19910.12.0e-8642.61 RNA-dependent RNA polymerase family protein[more]
AT2G19930.19.5e-8139.82 RNA-dependent RNA polymerase family protein[more]
AT2G19920.11.3e-7746.44 RNA-dependent RNA polymerase family protein[more]
BLAST of Cucsa.288910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778662744|ref|XP_011659950.1|6.9e-25998.26PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis sativus][more]
gi|778662741|ref|XP_011659949.1|6.9e-25998.26PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis sativus][more]
gi|778662747|ref|XP_011659951.1|1.0e-25798.25PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X3 [Cucumis sativus][more]
gi|659099783|ref|XP_008450774.1|5.2e-23891.94PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo][more]
gi|659099785|ref|XP_008450775.1|5.2e-23891.94PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007855RNA-dep_RNA_pol_euk-typ
Vocabulary: Molecular Function
TermDefinition
GO:0003968RNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0001172 transcription, RNA-templated
cellular_component GO:0031379 RNA-directed RNA polymerase complex
molecular_function GO:0003968 RNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.288910.1Cucsa.288910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 150..452
score: 8.9E
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 252..446
score: 4.0
NoneNo IPR availablePANTHERPTHR23079:SF13RNA-DEPENDENT RNA POLYMERASE 3-RELATEDcoord: 150..452
score: 8.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.288910MELO3C015404Melon (DHL92) v3.5.1cgymeB481
Cucsa.288910Cla97C03G066500Watermelon (97103) v2cgywmbB506
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.288910Cucumber (Chinese Long) v3cgycucB446
Cucsa.288910Cucumber (Chinese Long) v3cgycucB447
Cucsa.288910Cucumber (Chinese Long) v3cgycucB448
Cucsa.288910Watermelon (97103) v2cgywmbB505
Cucsa.288910Watermelon (97103) v2cgywmbB507
Cucsa.288910Wax gourdcgywgoB588
Cucsa.288910Wax gourdcgywgoB589
Cucsa.288910Cucumber (Gy14) v1cgycgyB067
Cucsa.288910Cucurbita maxima (Rimu)cgycmaB0810
Cucsa.288910Cucurbita maxima (Rimu)cgycmaB0811
Cucsa.288910Cucurbita maxima (Rimu)cgycmaB0813
Cucsa.288910Cucurbita maxima (Rimu)cgycmaB0814
Cucsa.288910Cucurbita moschata (Rifu)cgycmoB0803
Cucsa.288910Cucurbita moschata (Rifu)cgycmoB0805
Cucsa.288910Cucurbita moschata (Rifu)cgycmoB0807
Cucsa.288910Wild cucumber (PI 183967)cgycpiB437
Cucsa.288910Wild cucumber (PI 183967)cgycpiB438
Cucsa.288910Wild cucumber (PI 183967)cgycpiB439
Cucsa.288910Cucumber (Chinese Long) v2cgycuB414
Cucsa.288910Cucumber (Chinese Long) v2cgycuB415
Cucsa.288910Cucumber (Chinese Long) v2cgycuB416
Cucsa.288910Melon (DHL92) v3.5.1cgymeB482
Cucsa.288910Melon (DHL92) v3.5.1cgymeB483
Cucsa.288910Watermelon (Charleston Gray)cgywcgB503
Cucsa.288910Watermelon (Charleston Gray)cgywcgB504
Cucsa.288910Watermelon (Charleston Gray)cgywcgB505
Cucsa.288910Watermelon (Charleston Gray)cgywcgB506
Cucsa.288910Watermelon (97103) v1cgywmB531
Cucsa.288910Watermelon (97103) v1cgywmB532
Cucsa.288910Watermelon (97103) v1cgywmB533
Cucsa.288910Watermelon (97103) v1cgywmB534
Cucsa.288910Cucurbita pepo (Zucchini)cgycpeB0765
Cucsa.288910Cucurbita pepo (Zucchini)cgycpeB0767
Cucsa.288910Cucurbita pepo (Zucchini)cgycpeB0768
Cucsa.288910Cucurbita pepo (Zucchini)cgycpeB0770
Cucsa.288910Bottle gourd (USVL1VR-Ls)cgylsiB470
Cucsa.288910Bottle gourd (USVL1VR-Ls)cgylsiB471
Cucsa.288910Bottle gourd (USVL1VR-Ls)cgylsiB472
Cucsa.288910Melon (DHL92) v3.6.1cgymedB480
Cucsa.288910Melon (DHL92) v3.6.1cgymedB481
Cucsa.288910Melon (DHL92) v3.6.1cgymedB482
Cucsa.288910Silver-seed gourdcarcgyB0043
Cucsa.288910Silver-seed gourdcarcgyB0114
Cucsa.288910Silver-seed gourdcarcgyB0646
Cucsa.288910Silver-seed gourdcarcgyB1017