Cucsa.288630 (gene) Cucumber (Gy14) v1

NameCucsa.288630
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description40S ribosomal protein S30
Locationscaffold02698 : 188379 .. 189211 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCTCAGCGGCTTGTTATCGGAAGTTAAGCACCGGGAAGGTTCCGAAGCAATCAATCAGCCATGGGTGAGCAAAACCCCAGCTCTTGATTTCCTCACATTTGATCAGTTCTCTTTCTTGTGTCTATCGGTTCTTTCATCCGTATGAATCTGTTTGTGAATTGCGTGTATTCGTGCTTTTATCGATTTCAGGTAAAGTACACGGATCTCTGGCTCGTGCCGGTAAGGTGAGAGGTCAAACTCCAAAAGTAGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCAGGTAACATATTGTTTTGCAAATTATTTTGTTTATCAGATGTTTTACCGGTTTAGCATTGATGATTTTGGTTTAACATTGTATTCAATCACTATTCTGAGAAGTAAGTTAATTGGTTTATTTGTTAGCCTAGATGCAGTTCCTTACCAGAACAAATTTTTATTGCATTAGTAAGATTTTTGTATCAGAGTACGATAAGAATCATTCTGATGTGAGATTTAAATTTGTTTGATCTTTACAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAATAGAGCGACCTCATCGGGGGAGCTTTGCCGCTAGAGAGGCGTGGTTTTGTGCTTTACTATTAATCTTTTTCTTCCTATTTCTCATAGATGTTTTAGTTTATTGAGGTTTTTGGCTGTGTAAAAGATGTTTATTTTGACAATATATCAGAGTAATGTGATTTGGATCTGAATTTTGTCCTTAGTCCAACATTCTCTTTCTGAATTTTTATAGGT

mRNA sequence

TCTCCTCAGCGGCTTGTTATCGGAAGTTAAGCACCGGGAAGGTTCCGAAGCAATCAATCAGCCATGGGTAAAGTACACGGATCTCTGGCTCGTGCCGGTAAGGTGAGAGGTCAAACTCCAAAAGTAGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAATAGAGCGACCTCATCGGGGGAGCTTTGCCGCTAGAGAGGCGTGGTTTTGTGCTTTACTATTAATCTTTTTCTTCCTATTTCTCATAGATGTTTTAGTTTATTGAGGTTTTTGGCTGTGTAAAAGATGTTTATTTTGACAATATATCAGAGTAATGTGATTTGGATCTGAATTTTGTCCTTAGTCCAACATTCTCTTTCTGAATTTTTATAGGT

Coding sequence (CDS)

ATGGGTAAAGTACACGGATCTCTGGCTCGTGCCGGTAAGGTGAGAGGTCAAACTCCAAAAGTAGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTCACTGCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAA

Protein sequence

MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK*
BLAST of Cucsa.288630 vs. Swiss-Prot
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=3 SV=3)

HSP 1 Score: 125.6 bits (314), Expect = 2.0e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. Swiss-Prot
Match: RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-20
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of Cucsa.288630 vs. Swiss-Prot
Match: RS30_PONAB (40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-20
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of Cucsa.288630 vs. Swiss-Prot
Match: RS30_PIG (40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-20
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of Cucsa.288630 vs. Swiss-Prot
Match: RS30_BOVIN (40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-20
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of Cucsa.288630 vs. TrEMBL
Match: C6TEP1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G059600 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. TrEMBL
Match: A0A061GCX2_THECC (Ribosomal protein S30 family protein OS=Theobroma cacao GN=TCM_028966 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. TrEMBL
Match: A0A0E0DXS3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. TrEMBL
Match: U5D4V4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00036p00192320 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. TrEMBL
Match: A0A0B2SEH7_GLYSO (Protein transport protein Sec16B OS=Glycine soja GN=glysoja_018940 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1    MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
            MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1428 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 1487

Query: 61   EK 63
            EK
Sbjct: 1488 EK 1489

BLAST of Cucsa.288630 vs. TAIR10
Match: AT2G19750.1 (AT2G19750.1 Ribosomal protein S30 family protein)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. TAIR10
Match: AT4G29390.1 (AT4G29390.1 Ribosomal protein S30 family protein)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. TAIR10
Match: AT5G56670.1 (AT5G56670.1 Ribosomal protein S30 family protein)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. NCBI nr
Match: gi|944267741|gb|KQL31981.1| (hypothetical protein SETIT_019362mg, partial [Setaria italica])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 32 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 91

Query: 61 EK 63
          EK
Sbjct: 92 EK 93

BLAST of Cucsa.288630 vs. NCBI nr
Match: gi|641836965|gb|KDO55923.1| (hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95

Query: 61 EK 63
          EK
Sbjct: 96 EK 97

BLAST of Cucsa.288630 vs. NCBI nr
Match: gi|226499664|ref|NP_001149323.1| (uncharacterized protein LOC100282946 [Zea mays])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of Cucsa.288630 vs. NCBI nr
Match: gi|297743124|emb|CBI35991.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 52  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 111

Query: 61  EK 63
           EK
Sbjct: 112 EK 113

BLAST of Cucsa.288630 vs. NCBI nr
Match: gi|661881573|emb|CDP14733.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 47  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 106

Query: 61  EK 63
           EK
Sbjct: 107 EK 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS30_ARATH2.0e-2896.7740S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=3 SV=3[more]
RS30_RAT9.8e-2079.3140S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1[more]
RS30_PONAB9.8e-2079.3140S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1[more]
RS30_PIG9.8e-2079.3140S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=3 SV=1[more]
RS30_BOVIN9.8e-2079.3140S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1[more]
Match NameE-valueIdentityDescription
C6TEP1_SOYBN2.6e-27100.00Uncharacterized protein OS=Glycine max GN=GLYMA_05G059600 PE=2 SV=1[more]
A0A061GCX2_THECC2.6e-27100.00Ribosomal protein S30 family protein OS=Theobroma cacao GN=TCM_028966 PE=4 SV=1[more]
A0A0E0DXS3_9ORYZ2.6e-27100.00Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
U5D4V4_AMBTC2.6e-27100.00Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00036p00192320 PE=4 SV=... [more]
A0A0B2SEH7_GLYSO2.6e-27100.00Protein transport protein Sec16B OS=Glycine soja GN=glysoja_018940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G19750.11.1e-2996.77 Ribosomal protein S30 family protein[more]
AT4G29390.11.1e-2996.77 Ribosomal protein S30 family protein[more]
AT5G56670.11.1e-2996.77 Ribosomal protein S30 family protein[more]
Match NameE-valueIdentityDescription
gi|944267741|gb|KQL31981.1|3.7e-27100.00hypothetical protein SETIT_019362mg, partial [Setaria italica][more]
gi|641836965|gb|KDO55923.1|3.7e-27100.00hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis][more]
gi|226499664|ref|NP_001149323.1|3.7e-27100.00uncharacterized protein LOC100282946 [Zea mays][more]
gi|297743124|emb|CBI35991.3|3.7e-27100.00unnamed protein product [Vitis vinifera][more]
gi|661881573|emb|CDP14733.1|3.7e-27100.00unnamed protein product [Coffea canephora][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.288630.1Cucsa.288630.1mRNA


The following gene(s) are paralogous to this gene:

None