Cucsa.275620 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.275620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold02581 : 557344 .. 558885 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCACCAGAACACCGGAGGCTCAATCAACGCATAGAAAGGATGGACAACTAGCTCGACAGAGGACTCGTGGGTCCGAGTGGCAAGATCTGGCACTACGACTTTGGATTAGATAGCAGCGCGAAACGAACCTCGGGGGTAGCGTGACTGTGGGCCAAGTGGCAGCGTGCACGACAAACAAAATCGAACGGCCAGGAGTTGGTGGACGATTTCCAATCGGCAGACAGTGGCTAATCGGAGACGACGAGAGGAAGGGAGGGCCGTGGGCTTTCACGAAGAGGAAGAAAAATCCAGCTTCTTCTTTATTATAATTTCATTTTATAAAAATATAAAATAAAAAGATAAGAAATGACCAAAATGCCTCTCACTTTTATTTTTATATTTCCTTAATGCCCTTAGTGGTGTACTTCGAATCTACCCTTTTGAGAAAAATACAACTACTCTTTCTAATAATTGCTTCTTATAAATAATATCATCTCCTCCAAACAGAAGAGAAACATTCATCAACCAAAACCCTTCTAGTGGTTTGCACCATTTGGTATCATAGCACCCAAGGATTTCTAGGACCAATGGCCCTTCCTCAACCAATCAATTAGGTGGACGACGTCCAAAACGATCAAGAGCAAGAGGCAAAATCAACTTCCATCCTCTCTCCCAACGACTTCTTCAAGACACGCTTAGTTGAGAGAATTAAGAAAATTCTTAGAGAACGTTTGGTGAAGGAAAAAGTTATGATATAATCTTATGATTATAATAAAACTAATTTTATGATAAGATGTGTTTGGAAACGGTTTGTTATTGATAGTGTTATGATAGTATGTGTTTGGGGAATGATTATGATAAGTAGTATTATGATAATATTTGTCATAAACTTGGCCATTATTCCTCGGAATGCATAAATAGAGTTGAATAAAATGCAAATTATGCTGAGAAAGACGAAGAAAGTGGTAATTCATCATTGCTTCTAGCATGTAAAGGTGTGGAAACATGTGAAAACAATGCATGGTATCTCGATAGAGGTGCAAGCAATCATATGTATGGAAGTAAATCAATGTTCGTGGAGCTTGATGAATCTGTTGGTGGCGATATTGTATTTGGTGATGCCACAAAAATTCCAGTTAGAGGAAAAGGTAAAATGTTGATCAATTTGAAGAATGGAAAGCATGAGTTTATCTCTAATGTTTATTATGTGCTTGATATGAAGAACAACATTTTGAGTTTGAGACAACTCTTAGAGAAAGGCTATAATATTTTGATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACGATATGATTGCTAAAGTGCAAAAGACAAAAAATAGAATGTTTTTATTGAACATTCAAACTGATGTATCGAAATATTTAAAGTCATGTTTGAAAGATCCAAACTGGATTTGGCGCTTGAGATTTTGGCATTTAAATTTTGATGGCTTGAGACTATTAGCCAGGAAGGACAAACATCCAAACCAATTTGGTGAAGGTTGTCTTTATGGCAAGCAATCAAGGAAGAGTTTTCCACAACAATCATCCAAGT

mRNA sequence

ATGCTCACCAGAACACCGGAGGCTCAATCAACGCATAGAAAGGATGGACAACTAGCTCGACAGAGGACTCacgaagaaagtggtaattcatcattgcttctagcatgtaaaggtgtggaaacatgtgaaaacaatgcatggtatctcgatagaggtgcaagcaatcatatgtatggaagtaaatcaatgttcgtggagcttgatgaatctgttggtggcgatattgtatttggtgatgccacaaaaattccagttagaggaaaaggtaaaatgttgatcaatttgaagaatggaaagcatgagtttatctctaatgtttattatgtgcttgatatgaagaacaacattttgagtttgagacaactcttagagaaaggctataatattttgatgaaggattatagtcttttgataagagataatcatgacgatatgattgctaaagtgcaaaagacaaaaaatagaatgtttttattgaacattcaaactgatgtatcgaaatatttaaagtcatgtttgaaagatccaaactggatttggcgcttgagattttggcatttaaattttgatggcttgagactattagccaggaaggacaaacatccaaaccaatttggtgaaggttgtctttatggcaagcaatcaaggaagagttttccacaacaatcatccaagt

Coding sequence (CDS)

ATGCTCACCAGAACACCGGAGGCTCAATCAACGCATAGAAAGGATGGACAACTAGCTCGACAGAGGACTCACGAAGAAAGTGGTAATTCATCATTGCTTCTAGCATGTAAAGGTGTGGAAACATGTGAAAACAATGCATGGTATCTCGATAGAGGTGCAAGCAATCATATGTATGGAAGTAAATCAATGTTCGTGGAGCTTGATGAATCTGTTGGTGGCGATATTGTATTTGGTGATGCCACAAAAATTCCAGTTAGAGGAAAAGGTAAAATGTTGATCAATTTGAAGAATGGAAAGCATGAGTTTATCTCTAATGTTTATTATGTGCTTGATATGAAGAACAACATTTTGAGTTTGAGACAACTCTTAGAGAAAGGCTATAATATTTTGATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACGATATGATTGCTAAAGTGCAAAAGACAAAAAATAGAATGTTTTTATTGAACATTCAAACTGATGTATCGAAATATTTAAAGTCATGTTTGAAAGATCCAAACTGGATTTGGCGCTTGAGATTTTGGCATTTAAATTTTGATGGCTTGAGACTATTAGCCAGGAAGGACAAACATCCAAACCAATTTGGTGAAGGTTGTCTTTATGGCAAGCAATCAAGGAAGAGTTTTCCACAACAATCATCCAAGT

Protein sequence

MLTRTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSMFVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLLEKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLRFWHLNFDGLRLLARKDKHPNQFGEGCLYGKQSRKSFPQQSSKX
Homology
[Close]
BLAST of Cucsa.275620 vs. TrEMBL
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012506 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 228 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 287

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 288 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 347

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 348 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 407

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 408 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 451

[Close]
BLAST of Cucsa.275620 vs. TrEMBL
Match: A0A151TPU3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022691 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 294 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 353

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 354 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 413

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 414 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 473

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 474 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 517

[Close]
BLAST of Cucsa.275620 vs. TrEMBL
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047341 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 229 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 288

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 289 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 348

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 349 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 408

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 409 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 452

[Close]
BLAST of Cucsa.275620 vs. TrEMBL
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_033991 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 294 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 353

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 354 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 413

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 414 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 473

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 474 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 517

[Close]
BLAST of Cucsa.275620 vs. TrEMBL
Match: A0A151TGP0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012507 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-60
Identity = 126/228 (55.26%), Postives = 155/228 (67.98%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 283 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 342

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISN+YYV  MK+NILSL QLL
Sbjct: 343 FVELDESVKGNVAFGDESKVAVEGKGNVLIQLKNGEHQFISNIYYVPSMKSNILSLGQLL 402

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    I KV   +NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 403 EKGYDIQLKNNNLSIRDNTSRFITKVPMMRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 462

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 463 FGHLNFKGLDLLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 506

[Close]
BLAST of Cucsa.275620 vs. TAIR10
Match: AT3G21000.1 (AT3G21000.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-07
Identity = 28/92 (30.43%), Postives = 48/92 (52.17%), Query Frame = 1 

Query: 38  GVETCENNAWYLDRGASNHMYGSKSMFVELDESVGGDIVFGDATKIPVRGKGKMLINLKN 97
           G +T +++ W + + A  +M      F  LD +    +   D T + V GKG + I +K 
Sbjct: 271 GAKTYDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKE 330

Query: 98  GKHEFISNVYYVLDMKNNILSLRQLLEKGYNI 130
           GK + I NV +V  +  N+LS  +++ K Y+I
Sbjct: 331 GKKKTIRNVIFVPGLNRNVLSFGKMVSKRYSI 362

[Close]
BLAST of Cucsa.275620 vs. NCBI nr
Match: gi|1012318818|gb|KYP32069.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 245.4 bits (625), Expect = 9.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 229 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 288

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 289 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 348

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 349 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 408

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 409 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 452

[Close]
BLAST of Cucsa.275620 vs. NCBI nr
Match: gi|1012357856|gb|KYP69041.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 245.4 bits (625), Expect = 9.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 294 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 353

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 354 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 413

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 414 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 473

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 474 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 517

[Close]
BLAST of Cucsa.275620 vs. NCBI nr
Match: gi|1012355032|gb|KYP66219.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 245.4 bits (625), Expect = 9.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 228 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 287

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 288 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 347

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 348 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 407

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 408 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 451

[Close]
BLAST of Cucsa.275620 vs. NCBI nr
Match: gi|1012333128|gb|KYP44533.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 245.4 bits (625), Expect = 9.8e-62
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           R P       K    A +R  E+    +LLLA KG +  E+N WYLD GASNHM G +SM
Sbjct: 294 RAPNKNKVEEK-ANYAEERCQEDG---TLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSM 353

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV G++ FGD +K+ V GKG +LI LKNG+H+FISNVYYV  MK+NILSL QLL
Sbjct: 354 FVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLL 413

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +K+ +L IRDN    IAKV  T+NRMF+LNIQ+D  + LK C KD +W+W LR
Sbjct: 414 EKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLR 473

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K          HPNQ  EGCL GKQ R SFP++S
Sbjct: 474 FGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 517

[Close]
BLAST of Cucsa.275620 vs. NCBI nr
Match: gi|923521944|ref|XP_013670813.1| (PREDICTED: uncharacterized protein LOC106375445, partial [Brassica napus])

HSP 1 Score: 240.4 bits (612), Expect = 3.2e-60
Identity = 122/228 (53.51%), Postives = 156/228 (68.42%), Query Frame = 1 

Query: 4   RTPEAQSTHRKDGQLARQRTHEESGNSSLLLACKGVETCENNAWYLDRGASNHMYGSKSM 63
           +TP       K   +  +R  E+     LL+A K  E  E + WYLD GASNHM G+KSM
Sbjct: 308 KTPNNNRVEEKSNYVEERRKEEDM----LLMAYKKDEPNEVHKWYLDSGASNHMCGNKSM 367

Query: 64  FVELDESVGGDIVFGDATKIPVRGKGKMLINLKNGKHEFISNVYYVLDMKNNILSLRQLL 123
           FVELDESV  D+  GD +K+ V+GKG +LI LKNG H+FISNVYY+  MK NILSL QLL
Sbjct: 368 FVELDESVKTDVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLL 427

Query: 124 EKGYNILMKDYSLLIRDNHDDMIAKVQKTKNRMFLLNIQTDVSKYLKSCLKDPNWIWRLR 183
           EKGY+I +KD SL +RDN +++I KV  + NRMF+LNIQ D+++ LK C K+ +W+W LR
Sbjct: 428 EKGYDIRLKDNSLSLRDNANNLITKVPMSSNRMFVLNIQNDIARCLKMCYKEESWLWHLR 487

Query: 184 FWHLNFDGLRLLARKD--------KHPNQFGEGCLYGKQSRKSFPQQS 224
           F HLNF GL LL++K+         HPNQ  EGCL GKQ + SFP++S
Sbjct: 488 FGHLNFGGLELLSKKEMVKGLPCINHPNQVCEGCLLGKQFKMSFPKES 531

The following BLAST results are available for this feature:
BLAST of Cucsa.275620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151TGQ2_CAJCA6.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TPU3_CAJCA6.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151QP37_CAJCA6.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RPT4_CAJCA6.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TGP0_CAJCA2.2e-6055.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of Cucsa.275620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G21000.13.3e-0730.43 Gag-Pol-related retrotransposon family protein[more]
BLAST of Cucsa.275620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012318818|gb|KYP32069.1|9.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012357856|gb|KYP69041.1|9.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012355032|gb|KYP66219.1|9.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012333128|gb|KYP44533.1|9.8e-6256.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|923521944|ref|XP_013670813.1|3.2e-6053.51PREDICTED: uncharacterized protein LOC106375445, partial [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.275620.1Cucsa.275620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 43..224
score: 1.7
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 43..224
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.275620Watermelon (97103) v2cgywmbB481
Cucsa.275620Wax gourdcgywgoB557
Cucsa.275620Cucurbita maxima (Rimu)cgycmaB0769
Cucsa.275620Cucurbita maxima (Rimu)cgycmaB0770
Cucsa.275620Cucurbita moschata (Rifu)cgycmoB0762
Cucsa.275620Cucurbita moschata (Rifu)cgycmoB0763
Cucsa.275620Wild cucumber (PI 183967)cgycpiB415
Cucsa.275620Cucumber (Chinese Long) v2cgycuB392
Cucsa.275620Melon (DHL92) v3.5.1cgymeB460
Cucsa.275620Watermelon (Charleston Gray)cgywcgB478
Cucsa.275620Watermelon (97103) v1cgywmB507
Cucsa.275620Cucurbita pepo (Zucchini)cgycpeB0724
Cucsa.275620Cucurbita pepo (Zucchini)cgycpeB0725
Cucsa.275620Bottle gourd (USVL1VR-Ls)cgylsiB448
Cucsa.275620Melon (DHL92) v3.6.1cgymedB457
Cucsa.275620Silver-seed gourdcarcgyB0317
Cucsa.275620Silver-seed gourdcarcgyB0768
Cucsa.275620Cucumber (Chinese Long) v3cgycucB422