Cucsa.275270 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.275270
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold02581 : 137438 .. 139780 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATATGGGTGAGGCATCCTATGTGATTGAAATTGAAATATTCCGTGACCGAACACATGGATTGTTAGGATTGTCTCAAAAAACTTATATTACTAAAGTTTTAGAGAAATTTGAAATAGACAAATGCTCTTCAAGTGTAGTTCCAATTTAAAAGGGAGATAAGTTTAGTCTCATTCAATGTCCAAAAAATGAATTGGAACGAAATCAAGTGGAAACAATTCCTCATTCATCTATTGTTGTAAAGCTTATTTTATACACAGACTTGCACTATACCAAACATTGATTTTGTTGTGGGAATGCTAGGCAGATATCAAAGTAATCCAGGAATGGATAGATTTtCTCTCTTATTTACTATGGCGACGAAGAATCAAATTATCACTATATTTATTCCTTTTtcTACTTCTtCTtCCAAGTGCAGGATAACCCCAAGGGGTTGCGGGTTTTTTCTACCAATTGGGGCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACTTTCGTACATTCATTTCCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATATGCAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGCTTGGATATTCAGATTTATATTTTTTCGAATGTGTGAATACACGAAAATTCACTTTTGGCTATTTGTTCCTATTAGCAGAAGGAGCAATTTCATTGAAAAGTGCCAAACAGTCTATTATCGCTGCATCCAATATGGAGACTAAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGTCACGGAACTTTATCTCATGA

mRNA sequence

ATGAAAGATATGGGTGAGGCATCCTATGTGATTGAAATTGAAATATTCCGTGACCGAACACATGGATTGTTAGGATTGTCTCAAAAAACTTATATTACTAAAGTTTTAGAGAAATTTGAAATAGACAAATGCTCTTCAAGTGTAACTTGCACTATACCAAACATTGATTTTGTTGTGGGAATGCTAGGCAGATATCAAACTGCAAAGAAAGTTTTAAGGTATATGCAAGGAACAAAGGATtatatgcttacttacaagagatctgatcatcttgaggtgcttggatattcagatttatattttttcgaatgtgtgaatacacgaaaattcacttttggctatttgttcctattagcagaaggagcaatttcattgaaaagtgccaaacagtctattatcgctgcatccaatatggagactaaatttgtagcatgctttgaggctacagttcatggtttatggtcacggaactttatctcatga

Coding sequence (CDS)

ATGAAAGATATGGGTGAGGCATCCTATGTGATTGAAATTGAAATATTCCGTGACCGAACACATGGATTGTTAGGATTGTCTCAAAAAACTTATATTACTAAAGTTTTAGAGAAATTTGAAATAGACAAATGCTCTTCAAGTGTAACTTGCACTATACCAAACATTGATTTTGTTGTGGGAATGCTAGGCAGATATCAAACTGCAAAGAAAGTTTTAAGGTATATGCAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGCTTGGATATTCAGATTTATATTTTTTCGAATGTGTGAATACACGAAAATTCACTTTTGGCTATTTGTTCCTATTAGCAGAAGGAGCAATTTCATTGAAAAGTGCCAAACAGTCTATTATCGCTGCATCCAATATGGAGACTAAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGTCACGGAACTTTATCTCATGA

Protein sequence

MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSSVTCTIPNIDFVVGMLGRYQTAKKVLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECVNTRKFTFGYLFLLAEGAISLKSAKQSIIAASNMETKFVACFEATVHGLWSRNFIS*
Homology
[Close]
BLAST of Cucsa.275270 vs. TrEMBL
Match: A5B4U2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026445 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.4e-47
Identity = 101/172 (58.72%), Postives = 127/172 (73.84%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSSVT---CTIPNIDF 60
           MKDMGEASYVI I+I RD   G+LGLSQ+TYI KVLE+F +  CS SV+   CT P+I F
Sbjct: 117 MKDMGEASYVIGIKIHRDGFKGILGLSQETYINKVLERFRMKNCSPSVSHIVCTRPDIAF 176

Query: 61  VVGMLGRYQT---------AKKVLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECVNTR 120
            VGMLGRYQ+         AKKV+RY+QGTKDY L YKR+ +LEV+GYSD  F  CV++ 
Sbjct: 177 AVGMLGRYQSNPSIDHWKAAKKVMRYLQGTKDYKLMYKRTSNLEVVGYSDSDFASCVDSC 236

Query: 121 KFTFGYLFLLAEGAISLKSAKQSIIAASNMETKFVACFEATVHGLWSRNFIS 161
           K T GY+F+L  GAIS +S KQ++ A S ME +F++CFEAT HG+W ++FIS
Sbjct: 237 KSTSGYIFILVGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFIS 288

[Close]
BLAST of Cucsa.275270 vs. TrEMBL
Match: A0A151TCW7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_019523 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-46
Identity = 114/210 (54.29%), Postives = 131/210 (62.38%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTY-------------------ITKVLEKFEI 60
           MKDMGEASYVI IEIFRDR+ GLLGLSQK Y                   I K  +KF +
Sbjct: 114 MKDMGEASYVIGIEIFRDRSQGLLGLSQKAYINKILERFRMDKCSASPVPIQKG-DKFSL 173

Query: 61  DKCSSS----------------------VTCTIPNIDFVVGMLGRYQT---------AKK 120
            +C  +                       TCT P+I F VGMLGRYQ+         AKK
Sbjct: 174 MQCPKNDLERKQMEEIPYASIVGSLMYTQTCTRPDISFAVGMLGRYQSNPDIDHWKAAKK 233

Query: 121 VLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECVNTRKFTFGYLFLLAEGAISLKSAKQ 161
           V+RY+QGTK++MLTY+RSDHLEV+GYSD  F  CV+TRK TF YLF+LA GAIS KSAKQ
Sbjct: 234 VMRYLQGTKEHMLTYRRSDHLEVIGYSDSDFAGCVDTRKSTFDYLFMLAGGAISWKSAKQ 293

[Close]
BLAST of Cucsa.275270 vs. TrEMBL
Match: A5AKU4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002520 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 102/196 (52.04%), Postives = 129/196 (65.82%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSSVT----------- 60
           MKDMGEASYVI I+I RDR  G+LGLSQ+TYI KVLE+F +  CS SV+           
Sbjct: 195 MKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDREQMK 254

Query: 61  ----------------CTIPNIDFVVGMLGRYQT---------AKKVLRYMQGTKDYMLT 120
                           CT P+I F VGMLGRYQ+         AKKV+RY+QGTKDY L 
Sbjct: 255 NISYASVVESLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLM 314

Query: 121 YKRSDHLEVLGYSDLYFFECVNTRKFTFGYLFLLAEGAISLKSAKQSIIAASNMETKFVA 161
           Y+R+ +LEV+GYSD  F  CV++ K T GY+F+LA GAIS +S KQ++ A S ME +F++
Sbjct: 315 YRRTSNLEVVGYSDSDFAGCVDSHKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFIS 374

[Close]
BLAST of Cucsa.275270 vs. TrEMBL
Match: A0A151SED1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024820 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.1e-45
Identity = 99/160 (61.88%), Postives = 119/160 (74.38%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSSVTCTIPNIDFVVG 60
           MKDMGEA YVI IEIF  ++ GLL LSQK YI KVLE+F +DKCS+S         F + 
Sbjct: 103 MKDMGEAGYVIGIEIFCYKSQGLLSLSQKEYINKVLERFIMDKCSASPVPIQKKDKFSLI 162

Query: 61  MLGRYQTAKKVLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECVNTRKFTFGYLFLLAE 120
               ++  KKVLRY+QGTK++MLTY+RSDHLEV+GY+D  F  C++TRK TF Y++LL  
Sbjct: 163 QCPIWKAVKKVLRYLQGTKNHMLTYRRSDHLEVIGYTDSDFASCMDTRKSTFIYVYLLDG 222

Query: 121 GAISLKSAKQSIIAASNMETKFVACFEATVHGLWSRNFIS 161
           GAIS KSAKQS+IAAS ME +FVACFEATV   W RNFIS
Sbjct: 223 GAISWKSAKQSVIAASTMEAEFVACFEATVQANWLRNFIS 262

[Close]
BLAST of Cucsa.275270 vs. TrEMBL
Match: A5AHN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032710 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 92/175 (52.57%), Postives = 125/175 (71.43%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSS------VTCTIPN 60
           MKD+GEASYV+ I+I RD+ HG+L LSQK YI K+L+KF +  CSS+        CT P+
Sbjct: 620 MKDLGEASYVLGIKILRDKAHGVLKLSQKAYIGKILKKFNMHNCSSTRDLMYAQVCTRPD 679

Query: 61  IDFVVGMLGRY---------QTAKKVLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECV 120
           I FVVGMLGRY         + AKKVLRY+QGTKD MLTY+R++ L+V+ + D  F  C+
Sbjct: 680 IAFVVGMLGRYLSNPRSQHWKVAKKVLRYLQGTKDLMLTYQRTNILDVVRFCDADFVGCI 739

Query: 121 NTRKFTFGYLFLLAEGAISLKSAKQSIIAASNMETKFVACFEATVHGLWSRNFIS 161
           + +K T GY+F++A GAIS KS KQ++ A+S M+ ++VAC+EA  H +W RNF+S
Sbjct: 740 DDKKSTTGYIFMMAGGAISWKSVKQTLTASSTMKAEYVACYEACCHAIWMRNFVS 794

[Close]
BLAST of Cucsa.275270 vs. NCBI nr
Match: gi|147766741|emb|CAN74165.1| (hypothetical protein VITISV_026445 [Vitis vinifera])

HSP 1 Score: 195.7 bits (496), Expect = 6.4e-47
Identity = 101/172 (58.72%), Postives = 127/172 (73.84%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSSVT---CTIPNIDF 60
           MKDMGEASYVI I+I RD   G+LGLSQ+TYI KVLE+F +  CS SV+   CT P+I F
Sbjct: 117 MKDMGEASYVIGIKIHRDGFKGILGLSQETYINKVLERFRMKNCSPSVSHIVCTRPDIAF 176

Query: 61  VVGMLGRYQT---------AKKVLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECVNTR 120
            VGMLGRYQ+         AKKV+RY+QGTKDY L YKR+ +LEV+GYSD  F  CV++ 
Sbjct: 177 AVGMLGRYQSNPSIDHWKAAKKVMRYLQGTKDYKLMYKRTSNLEVVGYSDSDFASCVDSC 236

Query: 121 KFTFGYLFLLAEGAISLKSAKQSIIAASNMETKFVACFEATVHGLWSRNFIS 161
           K T GY+F+L  GAIS +S KQ++ A S ME +F++CFEAT HG+W ++FIS
Sbjct: 237 KSTSGYIFILVGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFIS 288

[Close]
BLAST of Cucsa.275270 vs. NCBI nr
Match: gi|1012353722|gb|KYP64910.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 193.0 bits (489), Expect = 4.1e-46
Identity = 114/210 (54.29%), Postives = 131/210 (62.38%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTY-------------------ITKVLEKFEI 60
           MKDMGEASYVI IEIFRDR+ GLLGLSQK Y                   I K  +KF +
Sbjct: 114 MKDMGEASYVIGIEIFRDRSQGLLGLSQKAYINKILERFRMDKCSASPVPIQKG-DKFSL 173

Query: 61  DKCSSS----------------------VTCTIPNIDFVVGMLGRYQT---------AKK 120
            +C  +                       TCT P+I F VGMLGRYQ+         AKK
Sbjct: 174 MQCPKNDLERKQMEEIPYASIVGSLMYTQTCTRPDISFAVGMLGRYQSNPDIDHWKAAKK 233

Query: 121 VLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECVNTRKFTFGYLFLLAEGAISLKSAKQ 161
           V+RY+QGTK++MLTY+RSDHLEV+GYSD  F  CV+TRK TF YLF+LA GAIS KSAKQ
Sbjct: 234 VMRYLQGTKEHMLTYRRSDHLEVIGYSDSDFAGCVDTRKSTFDYLFMLAGGAISWKSAKQ 293

[Close]
BLAST of Cucsa.275270 vs. NCBI nr
Match: gi|147789087|emb|CAN71425.1| (hypothetical protein VITISV_002520 [Vitis vinifera])

HSP 1 Score: 189.9 bits (481), Expect = 3.5e-45
Identity = 102/196 (52.04%), Postives = 129/196 (65.82%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSSVT----------- 60
           MKDMGEASYVI I+I RDR  G+LGLSQ+TYI KVLE+F +  CS SV+           
Sbjct: 195 MKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDREQMK 254

Query: 61  ----------------CTIPNIDFVVGMLGRYQT---------AKKVLRYMQGTKDYMLT 120
                           CT P+I F VGMLGRYQ+         AKKV+RY+QGTKDY L 
Sbjct: 255 NISYASVVESLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLM 314

Query: 121 YKRSDHLEVLGYSDLYFFECVNTRKFTFGYLFLLAEGAISLKSAKQSIIAASNMETKFVA 161
           Y+R+ +LEV+GYSD  F  CV++ K T GY+F+LA GAIS +S KQ++ A S ME +F++
Sbjct: 315 YRRTSNLEVVGYSDSDFAGCVDSHKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFIS 374

[Close]
BLAST of Cucsa.275270 vs. NCBI nr
Match: gi|1012341997|gb|KYP53194.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-44
Identity = 99/160 (61.88%), Postives = 119/160 (74.38%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSSVTCTIPNIDFVVG 60
           MKDMGEA YVI IEIF  ++ GLL LSQK YI KVLE+F +DKCS+S         F + 
Sbjct: 103 MKDMGEAGYVIGIEIFCYKSQGLLSLSQKEYINKVLERFIMDKCSASPVPIQKKDKFSLI 162

Query: 61  MLGRYQTAKKVLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECVNTRKFTFGYLFLLAE 120
               ++  KKVLRY+QGTK++MLTY+RSDHLEV+GY+D  F  C++TRK TF Y++LL  
Sbjct: 163 QCPIWKAVKKVLRYLQGTKNHMLTYRRSDHLEVIGYTDSDFASCMDTRKSTFIYVYLLDG 222

Query: 121 GAISLKSAKQSIIAASNMETKFVACFEATVHGLWSRNFIS 161
           GAIS KSAKQS+IAAS ME +FVACFEATV   W RNFIS
Sbjct: 223 GAISWKSAKQSVIAASTMEAEFVACFEATVQANWLRNFIS 262

[Close]
BLAST of Cucsa.275270 vs. NCBI nr
Match: gi|147772189|emb|CAN71319.1| (hypothetical protein VITISV_032710 [Vitis vinifera])

HSP 1 Score: 183.3 bits (464), Expect = 3.3e-43
Identity = 92/175 (52.57%), Postives = 125/175 (71.43%), Query Frame = 1 

Query: 1   MKDMGEASYVIEIEIFRDRTHGLLGLSQKTYITKVLEKFEIDKCSSS------VTCTIPN 60
           MKD+GEASYV+ I+I RD+ HG+L LSQK YI K+L+KF +  CSS+        CT P+
Sbjct: 620 MKDLGEASYVLGIKILRDKAHGVLKLSQKAYIGKILKKFNMHNCSSTRDLMYAQVCTRPD 679

Query: 61  IDFVVGMLGRY---------QTAKKVLRYMQGTKDYMLTYKRSDHLEVLGYSDLYFFECV 120
           I FVVGMLGRY         + AKKVLRY+QGTKD MLTY+R++ L+V+ + D  F  C+
Sbjct: 680 IAFVVGMLGRYLSNPRSQHWKVAKKVLRYLQGTKDLMLTYQRTNILDVVRFCDADFVGCI 739

Query: 121 NTRKFTFGYLFLLAEGAISLKSAKQSIIAASNMETKFVACFEATVHGLWSRNFIS 161
           + +K T GY+F++A GAIS KS KQ++ A+S M+ ++VAC+EA  H +W RNF+S
Sbjct: 740 DDKKSTTGYIFMMAGGAISWKSVKQTLTASSTMKAEYVACYEACCHAIWMRNFVS 794

The following BLAST results are available for this feature:
BLAST of Cucsa.275270 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B4U2_VITVI4.4e-4758.72Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026445 PE=4 SV=1[more]
A0A151TCW7_CAJCA2.9e-4654.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5AKU4_VITVI2.4e-4552.04Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002520 PE=4 SV=1[more]
A0A151SED1_CAJCA7.1e-4561.88Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5AHN5_VITVI2.3e-4352.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032710 PE=4 SV=1[more]
BLAST of Cucsa.275270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147766741|emb|CAN74165.1|6.4e-4758.72hypothetical protein VITISV_026445 [Vitis vinifera][more]
gi|1012353722|gb|KYP64910.1|4.1e-4654.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|147789087|emb|CAN71425.1|3.5e-4552.04hypothetical protein VITISV_002520 [Vitis vinifera][more]
gi|1012341997|gb|KYP53194.1|1.0e-4461.88Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|147772189|emb|CAN71319.1|3.3e-4352.57hypothetical protein VITISV_032710 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.275270.1Cucsa.275270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..50
score: 1.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..160
score: 1.6
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 1..160
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.275270Cucurbita pepo (Zucchini)cgycpeB0723
Cucsa.275270Cucurbita pepo (Zucchini)cgycpeB0726
Cucsa.275270Bottle gourd (USVL1VR-Ls)cgylsiB448
Cucsa.275270Melon (DHL92) v3.6.1cgymedB457
Cucsa.275270Silver-seed gourdcarcgyB1179
Cucsa.275270Cucumber (Chinese Long) v3cgycucB422
Cucsa.275270Watermelon (97103) v2cgywmbB480
Cucsa.275270Wax gourdcgywgoB558
Cucsa.275270Cucurbita maxima (Rimu)cgycmaB0771
Cucsa.275270Cucurbita moschata (Rifu)cgycmoB0761
Cucsa.275270Cucurbita moschata (Rifu)cgycmoB0764
Cucsa.275270Wild cucumber (PI 183967)cgycpiB415
Cucsa.275270Cucumber (Chinese Long) v2cgycuB392
Cucsa.275270Melon (DHL92) v3.5.1cgymeB460
Cucsa.275270Watermelon (Charleston Gray)cgywcgB477
Cucsa.275270Watermelon (97103) v1cgywmB506