Cucsa.271920 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.271920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Pseudouridine synthase family protein
Location	scaffold02500 : 690458 .. 696343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCACTTACTTCCGTCACTCAAGAGGCCATTTCTCCCGGTGACAAACTGCAGATCCCTTCTTACGCCACAAAAGACCTGTTGTCGATTGGCGTATGTTTTCTTGTCTTTAAACCTTCGATATCGTAGTACTAAATACTCGTGGTTACGAATGCGATCAATTTCTCTCACTTCATATTGTCTTAGTTTGTAGTTTCAAGCTATTTCTAGTCGTGTTTGAATGTGCTTGTTCATTTTGTCGTTATCCTTGATTTTTTTTTTGTTCACTTCAAACTAAAACCTCCAGAGTTGAGAATCGCCGTCGTTAGAAATGCTATCGACGAAGCTATCACTTCCTAACTTGATGATTTTCAGTTTGGAGGAAGTTTCTGGTTGTGTCTGAACTTTGAATGTGTTTCTATATTCAGTCGCTATTCTTAATTTTTCTTCGCAACCTAAATTTTCGTAGGCAATTATAGGAATGCAATCGATTTAACTTTCGCTTCTTAAATTGATAGTTTATAATTAGGAGGAAACTCTTGAATGTGCTTTTTCATTCGATCGCTAACCTCAAATTTTCCTCACTTGAACCTAGGATTTCATAGCGTAATAACCGTCGATAGGAAGGCGATTAATATAACGAACATCACTTTTATCTTATATCTTGATAGCCTGTAGTTTGGAGGAAATTGCTTTTGTGTTGAATGTGTTCCTTCATTCGATCATTATTCTTGATTTTTCTACGTCACCGAGGTAGCGCTATTTATTATTGTGACACCTTTAACATGATAAGTCATCTTTTATGTTTCCAAATTTCAGTTATACGTGTTCCGTTTATTTTCTATTTATACAGTAAACACGAGTTAGGGCTGTTAACTTTCGCTTAATAAGTTGATTTTCTAGCTTTTCAAGACGTCCTGTTTTATATATACTCTCGCTTGATTTTTAGCAATCTGCAGTTTTACAAGTCCTATTAAATTCTTGAAAATAATTATGTCTGTTATTACTGGCGACTGGCGTAATGCTAATGATATTGGTTTTATTATAACAATAAAAAATCAGAAGATGTTTATGGAATCATGATGGAAGTAGCATCGGCAGCAGCATTCTTTTTTCCTTTTTGCTCTTTTTTTATAATTTAATTTTATCGGTGCCTAATAGTGGTTTACAGCTGAGCTGATCAGCATCTATTATGTTGTAGGATACATTGGGCGGTGTTTTCCTGCTTTCATATTGGCATGCATTTACTATTTCAAGCAATAGTATTGGCATGTATTGGAATTGCATCGATGGTACTGTTTAGGATAGCCAGAAGATGTTTGATCGTTACTTTGCTTGCAGGTATGCATCCCCTGCATCATTCGCCTATCTGGCATTGAAAGGCACAGTTATTCCTTTTCATTGTCAGCACCAATCCTAGGTTCTGATAACGAGGCAATTGATGATGCTAATGATAGGAACACTTGCTGTCTATGTTTAGGTATTTTACAGTTCAGTTACATTGATGATAAAGGTGACTTTATAAAATGTAAAGGAGTTGATGATTTAGCTGTCTCGATTTCTGAGATGGTAAAGAAAGAGGGCCATCAGATTGATAGCTTTTCTCTTGAGGTGTCAGTTCCTTCAATCATTCTGGAGAATGAGAAGCGTGTTTGGTAAGAGCAACCCCCCCCCCCCCCCCCCAAAATAAATAAATAAATAAATAGATAAAGGGAGACAGTTCTGTTGGTTAGGTTAAATGTGTGTGTGTTTCCAATAACAATATAAATTGCTTTGATTTTCATTTTCGTTTATGGTTTTTGTATTCTGAACAGAACTGTAGTTAACTTTTCATGTAAGAAGAAAGCTTTGTTACTGAGGGAAAGTAAGCGCAAAGGTTAATGAAATAAATTGCCTATAGAAAGTGAAAAACAAGTTCATAACTAGAGCATATTATCTAACAAATGATTTGAAAAATAAAAAATTGGATACATATTGTTTTTCGCTCTTACATGGGCTGATCTATTGTAAAATTCTTTTGAAGACAAAGTGAAGTGTTAGATTAGCAGAAAAAAATGATTATCATATAAGCTCTAAAACGATAACCTCTTTGAAAGTTATTGTGATTGGGAGATTTCATATGTGACATGGCTGAAGTGGTTTATCCTCTTAAAACCTCTTTCGTTTGTGCTGCCAAACCTTGCTGACGTTGGATTTTACTTAGTCCATTTAATGTGCCAGTTCATATTGTAGTTACTATTTTTCATTTCTGCATTGCAGGCTGTATTTGAAAAGAAAATATGGGTCTGAACAGTGGTTTCAAGGCAAGCCTCCTCCTATATGTCTTTCAGCGAAGGATGCCTTAAAAATCTGTATAACAAAGCCTCTTGAAACTTTACTGGTGAGTGCATTCTCCATTGTTTACCGAAGATAAGTGTTTATCTTATGCAAAATGATGCCAGCGAGCCTTTCACAATGAAGAGGACTATTTTTTAGTTTTTCTTTAAAAAAAATTTATTATTTGGGTATTTGAAAGGAAAAAGTTCATTGATTAATATTTATCCATGAAGTTATGCAGGATTGCAAGTCTAGTTCAAGTGGCTTGCGCATCCGGTTAACTTATAGTCATCCTAAAGCTTCAAATAGCAATGGTAATTCCATCAAAAGAAACCAGGATGGCTTCAAGATGAGAAAAATCGGTTAGTTAGTTGAACCTTTGCTATTAATTGTCACTACTCTTCTGTATAGATTCAGAAACAAGAAGTTATCTATCGCTTTACCTTCAAATTTTCTCATTCTCAACAACTTTATTAGATGTCAAGCCCTAGTAATCTATATGCTTGGAAGTACATGCATGGTAAATTCATACCAAAACCTATTGCAAATTCGCAATACTATATACCTTAATTAGAAAGTGCAAGAGATTTGAGAAACATAGAGTTGTAGTTCATTTTCTTAAATCACACACATAGATGCCGAAAAAGTCATTTGAAACGTGTCCATATTGTCATTGCACTCCTTTGTGAAGAACTCTGCTGTCCGATTATCACCATCTTGAAATTTATTGGAGTCTAAATATTTGTAGCTGTGTACAAATTTCTTTGATGGGCCTTTCAAGCCAAATTCTGTTTGTAGCAGAAATTGTATCCCAAGAAAGATCAGTAGTTAAGGATATAAGATTTATTATTATTGTCATTATTGTTATTATTATTTTTGGATGAAGTTAGTACTACTTTCCTTTTTTCCATTAGCCATTAGCCATTTGGAGTTGGAGTTGTTCTCCAAAGTAACTATTATATTTAAAAATGTCTTATCTGTAGCAGAAAGTTGTACAGGAGAGCCCAATTCTATTTCTTCTCTTAGAGGTGATTGTTTTACTTCCTAAACCCAATCAAGATGTTGCAGCGAGTCCCTTTACCTTTAGGAACCTAGAGTAGGGAATTGATTTGTATTTCTTTACATGTATTTAATCAGTTACCTTCAACATGTAGTTTCCGGAAAGGAAAAAAAAACAAAGTTACCTTTGACATGTGAACTGAGATGGCTGTTGAAGCCAATGATTGTAGCTCAGAGACTATTGATGATTCTATTGCAGTTGGCAGTGATGAACCCTCGGATATTTCAAACTGTAATTCCGTTGCTGATGATTGTATCAACCCTTCACAAGAAGTTGTTTTTCCTCAAGAAACGGTAAGTTTGTTCTATACTATTTAAATGATTAAAAAGATGATGTCACTGACTAAATGAACTTCGGTCTTTATGTCCTAGATATTAAAAAAATGGTGACCTTGACCAATTGATTTCAATTTCATCATTGGAAGTGTAATATTGGAAAAAAAATGAATGGAGGTATAAGATTTTGATTAAAGGATTTAAAGTCAATAAACTGCAGAGTTCATGATGTAGAAAATGATGGTGTATCTTTTTCTTTTTATCGTTTTCTATTCTCGGTTTAAGGGACTCAAGATCAACTCTTTGTTGTGCATTGTAATCTGATCCTTCGCATTCAGATTTTTGTTACATATTTTATTGGTTACTAATGGTGGTACTCTCTGTTTCTCGTCAATTCTACGTAGATCAAAGAACCATGCCATTTGGCTTTAACTTGTTATAGAACTTCGATATACATAGTTGGCAGATATATAAAGGTAAATAAGTTTTATTTTCTACATTTCATTTTTCCCCAAAGACTTGGTTAAGTACTTCACTGATTCATAACCTCCTGGATTATTAACTTTTTTATTGTAGTATTCAAGAAATGTGAGTCAGACACGTTGGGTAATTGGTGAAGAGAGAATGGGAGAAGCATCTGTCGAGGTAGTGATTTTTGACTTTGGTGACTGGCTGTTCTATTATACAACTGTTCATTTAGCAAGAAAAAGTTTACAGTACCATGGGTATCTGCAGGAGATTTTAGGCAACAATATTCTTCCCTTCTGTCGTGGTGATAGTTACAAGTTTCATGCTGCCGGTAGAGAGGATCTCGATGTAATATTCCTCCCTTATTGACAATCATGATTCTCTCTACTGTTTGTAATATTAAATTTTCTTGTCAGGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACGCACGTCTTCTCCCATCTGAGATGATTATAAATGAAATACAGTCGAAGATAAATAGTTCAGAAAATAAATTGGTAACACACTGTTCATATTGTACTGCTTCTTCCATTGATTAAAATTACTGCAAACTTCATATGAATCACATTACTATTTCAGATTGGCGTAAGAAATCTGAAAGTCGTAGGCAGCGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAGGTTTTCTCTATGATCAATCTTTTTTTCAATTACAAATACAAAATTCTGTTTAATTCTGTATTTGTGACTCTTTAAATCAATGCAGAAACAATATGCTGCACTTGTGTGGACATCTCGCCCACTCGAGGATGCTGATCTTTTATCAATATCATCACTCAAAGACTTGGTGAGGAGTTTAGCAAGCTTGATGCTTTGATTTCATATCTCATATGATTTACGCGTTACATTTTAGAACTATGCTTATGAAATTATTTTTCTTTTGTGCAGAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCGCCGAAGTCCATTAGAACGTGAAAAGATCATCCACTGGTTAGAGTCCCTTTTCCAATCGTACAGTAATGCTACAATATCCACTCATGCTTCCTCTGAGGGTCACTGACGATGTTCTCTTTTTTCATTTTAGGATGAAGATTGAGAAGGTTGCTGAAAGTTCTCAGTATTATCTCCTACATTTGTGTACCCAGGTATCTATATACATTATACATAAACCCCTAAATTACCTTGACCTTTCTATTGAAATTGTTTAAAATCGTAATCTAAAAGATGGTGGTAAACACCAAAATTCGCAAACCTTGTTAAAGAAAAAGTGAAAAGCATAAATGATTAGTTGAATCGGATGTAAACCCTAAACTTTTAAATAGTAAAATGTAAAAGACTAACTATTACTATATGTTGCATAGGCTGGAACATACATTAAAGAATTCGTCCATGGGGATCTTGGTCGGACTCATCCCAGGTATGAGGAACTCTTAATCAGTTGGTTTGGTATAAACGACATTGTTGAGTTGTAATTTGTCTTGACATCTATTTAACGGATTTGTTATCGGTTACAGTATAGGATCCATTCTTAGTTGCCGAGCCGAGATTCTGCAACTTGACGTTACGGATATAAAAATGGACTGTCATTTGGGTGAATAAAAGAAAGGTTAGATCAAGGTGTGTATTCCTGCTCTTTAACTCTGGCTCTCATTCTCGTGGATTTTGCAAAAATTGTATTCCTCTTTTCATCATGTTGGACCCCAACTTATGACGTTATCAACAGGTTCATTGATAGAAGAAGGAG

mRNA sequence

CTCGCACTTACTTCCGTCACTCAAGAGGCCATTTCTCCCGGTGACAAACTGCAGATCCCTTCTTACGCCACAAAAGACCTGTTGTCGATTGGCGTATGCATCCCCTGCATCATTCGCCTATCTGGCATTGAAAGGCACAGTTATTCCTTTTCATTGTCAGCACCAATCCTAGGTTCTGATAACGAGGCAATTGATGATGCTAATGATAGGAACACTTGCTGTCTATGTTTAGGTATTTTACAGTTCAGTTACATTGATGATAAAGGTGACTTTATAAAATGTAAAGGAGTTGATGATTTAGCTGTCTCGATTTCTGAGATGGTAAAGAAAGAGGGCCATCAGATTGATAGCTTTTCTCTTGAGGTGTCAGTTCCTTCAATCATTCTGGAGAATGAGAAGCGTGTTTGGCTGTATTTGAAAAGAAAATATGGGTCTGAACAGTGGTTTCAAGGCAAGCCTCCTCCTATATGTCTTTCAGCGAAGGATGCCTTAAAAATCTGTATAACAAAGCCTCTTGAAACTTTACTGGATTGCAAGTCTAGTTCAAGTGGCTTGCGCATCCGGTTAACTTATAGTCATCCTAAAGCTTCAAATAGCAATGGTAATTCCATCAAAAGAAACCAGGATGGCTTCAAGATGAGAAAAATCGTTGGCAGTGATGAACCCTCGGATATTTCAAACTGTAATTCCGTTGCTGATGATTGTATCAACCCTTCACAAGAAGTTGTTTTTCCTCAAGAAACGATCAAAGAACCATGCCATTTGGCTTTAACTTGTTATAGAACTTCGATATACATAGTTGGCAGATATATAAAGTATTCAAGAAATGTGAGTCAGACACGTTGGGTAATTGGTGAAGAGAGAATGGGAGAAGCATCTGTCGAGGAGATTTTAGGCAACAATATTCTTCCCTTCTGTCGTGGTGATAGTTACAAGTTTCATGCTGCCGGTAGAGAGGATCTCGATGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACGCACGTCTTCTCCCATCTGAGATGATTATAAATGAAATACAGTCGAAGATAAATAGTTCAGAAAATAAATTGATTGGCGTAAGAAATCTGAAAGTCGTAGGCAGCGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAGAAACAATATGCTGCACTTGTGTGGACATCTCGCCCACTCGAGGATGCTGATCTTTTATCAATATCATCACTCAAAGACTTGAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCGCCGAAGTCCATTAGAACGTGAAAAGATCATCCACTGGATGAAGATTGAGAAGGTTGCTGAAAGTTCTCAGTATTATCTCCTACATTTGTGTACCCAGGCTGGAACATACATTAAAGAATTCGTCCATGGGGATCTTGGTCGGACTCATCCCAGTATAGGATCCATTCTTAGTTGCCGAGCCGAGATTCTGCAACTTGACGTTACGGATATAAAAATGGACTGTCATTTGGGTGAATAAAAGAAAGGTTAGATCAAGGTTCATTGATAGAAGAAGGAG

Coding sequence (CDS)

ATGGTAAAGAAAGAGGGCCATCAGATTGATAGCTTTTCTCTTGAGGTGTCAGTTCCTTCAATCATTCTGGAGAATGAGAAGCGTGTTTGGCTGTATTTGAAAAGAAAATATGGGTCTGAACAGTGGTTTCAAGGCAAGCCTCCTCCTATATGTCTTTCAGCGAAGGATGCCTTAAAAATCTGTATAACAAAGCCTCTTGAAACTTTACTGGATTGCAAGTCTAGTTCAAGTGGCTTGCGCATCCGGTTAACTTATAGTCATCCTAAAGCTTCAAATAGCAATGGTAATTCCATCAAAAGAAACCAGGATGGCTTCAAGATGAGAAAAATCGTTGGCAGTGATGAACCCTCGGATATTTCAAACTGTAATTCCGTTGCTGATGATTGTATCAACCCTTCACAAGAAGTTGTTTTTCCTCAAGAAACGATCAAAGAACCATGCCATTTGGCTTTAACTTGTTATAGAACTTCGATATACATAGTTGGCAGATATATAAAGTATTCAAGAAATGTGAGTCAGACACGTTGGGTAATTGGTGAAGAGAGAATGGGAGAAGCATCTGTCGAGGAGATTTTAGGCAACAATATTCTTCCCTTCTGTCGTGGTGATAGTTACAAGTTTCATGCTGCCGGTAGAGAGGATCTCGATGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACGCACGTCTTCTCCCATCTGAGATGATTATAAATGAAATACAGTCGAAGATAAATAGTTCAGAAAATAAATTGATTGGCGTAAGAAATCTGAAAGTCGTAGGCAGCGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAGAAACAATATGCTGCACTTGTGTGGACATCTCGCCCACTCGAGGATGCTGATCTTTTATCAATATCATCACTCAAAGACTTGAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCGCCGAAGTCCATTAGAACGTGAAAAGATCATCCACTGGATGAAGATTGAGAAGGTTGCTGAAAGTTCTCAGTATTATCTCCTACATTTGTGTACCCAGGCTGGAACATACATTAAAGAATTCGTCCATGGGGATCTTGGTCGGACTCATCCCAGTATAGGATCCATTCTTAGTTGCCGAGCCGAGATTCTGCAACTTGACGTTACGGATATAAAAATGGACTGTCATTTGGGTGAATAA

Protein sequence

MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKICITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDISNCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE*

Homology

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BLAST of Cucsa.271920 vs. Swiss-Prot
Match: PUS10_MOUSE (Putative tRNA pseudouridine synthase Pus10 OS=Mus musculus GN=Pus10 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.3e-61
Identity = 152/399 (38.10%), Postives = 230/399 (57.64%), Query Frame = 1


Query: 2   VKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKIC 61
           V+  G +  S  L VS P  +   E   WL +K++ G +    G+   + L  K+A K  
Sbjct: 130 VEASGFEFTSVVLSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRNDVVQL--KEAYK-W 189

Query: 62  ITKPL--ETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGS--DEPS 121
           IT PL  E L       S   + + ++HP+ +       +  +D FK  K   S     +
Sbjct: 190 ITHPLFSEELGVPTDGKSLFEVSVVFAHPETAEDCHFLGEVCRDCFKPAKNKQSVFTRMA 249

Query: 122 DISNCNSVADDCINPSQEVVFPQETIKEPCH-LALTCYRTSIYIVGRYIKYSRNVSQTRW 181
            +   + + ++      +   P  + K  C  L + C   ++++ GRY KYSRN+ QT W
Sbjct: 250 VLKALSKIKEEDF--LGQFPCPPNSPKTVCTVLEVECTHGAVFVAGRYNKYSRNLPQTPW 309

Query: 182 VIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNA-RL 241
           +I  ER  E+SVEE++ +++L   R +S+ F ++GRED+DVR LG+GRPF VE+ N  R+
Sbjct: 310 IIDGERKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRV 369

Query: 242 LPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLE 301
             +   + E+Q  IN S +K I VR+L++V  E    ++EGE EK K Y+AL+WT+R ++
Sbjct: 370 HFTSQEMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQ 429

Query: 302 DADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAG 361
             D+  +  LKDLKI Q+TP+RVLHRR    R + IH MK   + E   ++ LHL TQAG
Sbjct: 430 KKDIGFLDDLKDLKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYLDE--HHFRLHLKTQAG 489

Query: 362 TYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMD 395
           TYIKEFVHGD GRT P++GS+++  A+IL+LDV  + +D
Sbjct: 490 TYIKEFVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 520

[Close]

BLAST of Cucsa.271920 vs. Swiss-Prot
Match: PUS10_HUMAN (Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.3e-60
Identity = 121/258 (46.90%), Postives = 180/258 (69.77%), Query Frame = 1


Query: 139 PQETIKEPCH-LALTCYRTSIYIVGRYIKYSRNVSQTRWVIGEERMGEASVEEILGNNIL 198
           P  + K  C  L + C   ++++ GRY KYSRN+ QT W+I  ER  E+SVEE++ +++L
Sbjct: 268 PPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLL 327

Query: 199 PFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNA-RLLPSEMIINEIQSKINSSENKL 258
              + +S+ F ++GRED+DVR LG+GRPF +E+ N  R+  +   I E+Q KIN+S NK 
Sbjct: 328 AVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK- 387

Query: 259 IGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLLSISSLKDLKILQRTPI 318
           I VR+L++V  E    ++EGE EK K Y+AL+WT++ ++  D+  ++ +KDLKI Q+TP+
Sbjct: 388 IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKDLKIDQKTPL 447

Query: 319 RVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSI 378
           RVLHRR    R ++IH+M+ + V E   ++ LHL TQAGTYIKEFVHGD GRT P+IGS+
Sbjct: 448 RVLHRRPLAVRARVIHFMETQYVDE--HHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSL 507

Query: 379 LSCRAEILQLDVTDIKMD 395
           ++  A+IL+LDV  + +D
Sbjct: 508 MNVTADILELDVESVDVD 522

[Close]

BLAST of Cucsa.271920 vs. Swiss-Prot
Match: PUS10_XENLA (Putative tRNA pseudouridine synthase Pus10 OS=Xenopus laevis GN=pus10 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.2e-59
Identity = 141/393 (35.88%), Postives = 220/393 (55.98%), Query Frame = 1


Query: 7   HQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKICITKPL 66
           +++  F L +S+P+ +   E   WL  K++ G       K   + L  K+A K  I   L
Sbjct: 124 YELKDFVLSISLPAQLSVREHSAWLQAKQEMGKHGHSLDKTDIVQL--KEAYKWIIHPLL 183

Query: 67  ETLLDCKSSSSGL-RIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGS--DEPSDISNCN 126
              L  ++ S  L  + + ++HP+            +D FK  K   S     + +    
Sbjct: 184 SDQLGIQADSKSLFEVAVVFTHPETDGDCHFLATVCRDCFKPTKNKQSVFTRMAVVKALE 243

Query: 127 SVADDCINPSQEVVFPQETIKEPCHLA-LTCYRTSIYIVGRYIKYSRNVSQTRWVIGEER 186
            + ++      +  FP  + +  C +  + C  + +++ GRY KYSRN+ QT W+I  ER
Sbjct: 244 KIKEEDFRV--QFPFPPSSPETTCEVVDIQCNHSPVFVAGRYNKYSRNLPQTPWIIDGER 303

Query: 187 MGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLP-SEMI 246
             E+SVEE++ ++++   R  S+ F ++GRED+DVR LG GRPF +E+ N   +  +   
Sbjct: 304 KIESSVEELITDHLVAAFRSSSFNFSSSGREDVDVRTLGKGRPFAIELLNPHKVQFTGQE 363

Query: 247 INEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLLS 306
           I  +Q KIN+S+   I VR+L++V  E  A ++EGE EK K Y AL+W  + + + DL  
Sbjct: 364 IKALQQKINTSDK--IKVRDLQIVSREAVAHMKEGEEEKTKCYCALIWIEKMVRNEDLQL 423

Query: 307 ISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKEF 366
           +  L++L I Q+TP+RVLHRR    R + IH M+ E V E   ++ L+L TQAGTYIKEF
Sbjct: 424 LDGLEELTIAQKTPLRVLHRRPLASRSRTIHTMRTEYVDE--HHFRLYLKTQAGTYIKEF 483

Query: 367 VHGDLGRTHPSIGSILSCRAEILQLDVTDIKMD 395
           VHGD GRT P++GSI+   A+IL+LDV  + +D
Sbjct: 484 VHGDFGRTKPNVGSIMETNADILELDVESVDVD 508

[Close]

BLAST of Cucsa.271920 vs. Swiss-Prot
Match: PUS10_DROME (Putative tRNA pseudouridine synthase Pus10 OS=Drosophila melanogaster GN=Pus10 PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-36
Identity = 118/395 (29.87%), Postives = 195/395 (49.37%), Query Frame = 1


Query: 14  LEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKICITKPLETLLDCK 73
           L + +P  +   +  +W  L+R++G     +  PP + +  K+A+K+ +   +   L   
Sbjct: 105 LAICLPMSLQLRQLAMWFALRRRFGPSI-DENNPPDVPI--KEAVKLILHPIICEKLAKV 164

Query: 74  SSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDISNCNSVADDCINPS 133
             ++GL I +  +H          +K N++ F  +    +     I     + +    PS
Sbjct: 165 YDANGLMINIDLTHSLEGEEVEKLVKLNKEAFPAK----ASHQKRIEISRGLLEKQYQPS 224

Query: 134 Q------EVVF--PQETIKEPCHL-ALTCYRTSIYIVGRYIKYSRNVSQTRWVIGEERMG 193
           +      E  F  P   ++E   L ++      I + GRY K SR +S T W++  +R+ 
Sbjct: 225 KVKAETYEKYFQIPCSNVEESIKLTSIDLQGPLICVAGRYRKLSRELSHTPWILNGQRLM 284

Query: 194 EASVEEILGNNILPFCRGDSYK--FHAAGREDLDVRMLGSGRPFLVEIQNAR---LLPSE 253
           E S+EEI+  ++ P       K  F ++GRED+DVR LG GRPF++EI NA+   L   E
Sbjct: 285 EDSIEEIIIRHVGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNAKRSCLTKDE 344

Query: 254 MIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADL 313
               E    +++S   ++ + +L+VV  E    ++ GE +K+K Y AL     P+    L
Sbjct: 345 AFAME--RAVDASG--MVSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKIL 404

Query: 314 LSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIK 373
             +       I Q+TPIRVLHRR    R + I+ +  +    + +  ++ + TQAGTYIK
Sbjct: 405 EQLQISASFNIQQKTPIRVLHRRPLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGTYIK 464

Query: 374 EFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMD 395
           E VHG+ GRT PS+ SI+    +I  LDV  I +D
Sbjct: 465 ELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLD 488

[Close]

BLAST of Cucsa.271920 vs. Swiss-Prot
Match: PUS10_THEPD (tRNA pseudouridine synthase Pus10 OS=Thermofilum pendens (strain Hrk 5) GN=pus10 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.2e-35
Identity = 90/245 (36.73%), Postives = 136/245 (55.51%), Query Frame = 1


Query: 150 ALTCYRTSIYIVGRYIKYSRNVSQTRWVIGEERMG-EASVEEILGNNILPFCRGDSYKFH 209
           A+  +   +++ GRY KY+R + Q  W   +ER+    S+EE++    L     +  KFH
Sbjct: 200 AIELHPAPVFVYGRYRKYARGLPQNPWPQPDERIKFNTSIEELIVKPALELFEAEKAKFH 259

Query: 210 AAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSE 269
           AAGRED+DVR LG+GRPF++EI+  R     + +  +  KINS    LI V +L     +
Sbjct: 260 AAGREDIDVRTLGTGRPFVLEIKKPR--KRNIDLKVLAEKINSGAGGLIEVLDLAYTDRK 319

Query: 270 GWALVQEGEAEKQKQYAALVWTSRPLEDADLLSISSL-KDLKILQRTPIRVLHRRSPLER 329
               ++   +  +K Y A V   +P++D  L  IS +  +  I QRTP RVLHRR    R
Sbjct: 320 TIKKLKSLASIAKKAYVARVKFEKPVDDEKLAEISKVFSNAVINQRTPTRVLHRRVDKLR 379

Query: 330 EKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLD 389
           +KI++ ++  K+++    + L   TQ G Y+KEF+HGD GRT PSI   L      ++LD
Sbjct: 380 KKIVYRLEARKISQDEVEFYLE--TQGGFYVKEFIHGDNGRTTPSIAEFLGNNVLSIELD 439

Query: 390 VTDIK 393
           V  I+
Sbjct: 440 VVSIE 440

[Close]

BLAST of Cucsa.271920 vs. TrEMBL
Match: A0A0A0L378_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653400 PE=4 SV=1)

HSP 1 Score: 803.5 bits (2074), Expect = 1.2e-229
Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI
Sbjct: 123 MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 182

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
           CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS
Sbjct: 183 CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 242

Query: 121 NCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGE 180
           NCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGE
Sbjct: 243 NCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGE 302

Query: 181 ERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEM 240
           ERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEM
Sbjct: 303 ERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEM 362

Query: 241 IINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLL 300
           IINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLL
Sbjct: 363 IINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLL 422

Query: 301 SISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKE 360
           SISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKE
Sbjct: 423 SISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKE 482

Query: 361 FVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 400
           FVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE
Sbjct: 483 FVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 521

[Close]

BLAST of Cucsa.271920 vs. TrEMBL
Match: E5GCD5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 678.7 bits (1750), Expect = 4.3e-192
Identity = 354/415 (85.30%), Postives = 357/415 (86.02%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI
Sbjct: 123 MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 182

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKI---------- 120
           CITKPLETLLDCKSSSSGLRIRLTYSHPKASN NGNSIKRNQDGFKMRKI          
Sbjct: 183 CITKPLETLLDCKSSSSGLRIRLTYSHPKASNGNGNSIKRNQDGFKMRKISNDCSLETID 242

Query: 121 ----VGSDEPSDISNC--NSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRY 180
               VGSDEPSDISNC  NSVADDCINPSQEV+FPQET                      
Sbjct: 243 DSIAVGSDEPSDISNCNVNSVADDCINPSQEVIFPQET---------------------- 302

Query: 181 IKYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGR 240
             YSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAA            GR
Sbjct: 303 --YSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAA------------GR 362

Query: 241 PFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQY 300
           PFLVEIQNARLLPSEMIINEIQSKINS E KL+GVRNLKVVGSEGWALVQEGEAEKQKQY
Sbjct: 363 PFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEGEAEKQKQY 422

Query: 301 AALVWTSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQ 360
           AALVWTSRPLED D LSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVA+SSQ
Sbjct: 423 AALVWTSRPLEDDDFLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAKSSQ 482

Query: 361 YYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 400
           YYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHL E
Sbjct: 483 YYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLAE 501

[Close]

BLAST of Cucsa.271920 vs. TrEMBL
Match: A0A061FDT4_THECC (Pseudouridine synthase family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_034331 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 4.8e-151
Identity = 274/421 (65.08%), Postives = 325/421 (77.20%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           +VK+EGHQID FSLEVSVP +ILENE  +  ++K+KY SE WFQ +    C S KD LK 
Sbjct: 129 LVKQEGHQIDGFSLEVSVPPLILENESSLLSHMKKKYESEPWFQERLLSKCHSVKDVLKF 188

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
            ITKPLETLL  K+S+S  RIRLTY+H +AS    NS++RNQ+  K RK    +   +++
Sbjct: 189 AITKPLETLLGVKASASSFRIRLTYTHKRASKKVQNSVERNQE-CKRRKTGTENALHNVN 248

Query: 121 NCNSVAD-DCIN---------------------PSQEVVFPQETIKEPCHLALTCYRTSI 180
           + + +AD DC                        S+    P E + EPCHL   C RT I
Sbjct: 249 DESVIADKDCSGYSTIETNSVTGIFSNGVQDQETSEHFESPIEKVSEPCHLVYVCCRTHI 308

Query: 181 YIVGRYIKYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVR 240
           Y+ GRY+KYSRNVSQTRW+I EERMGEASVEEI+G+NILP C+GD+YKFHAAGRED+DVR
Sbjct: 309 YLCGRYLKYSRNVSQTRWIIDEERMGEASVEEIIGSNILPICQGDNYKFHAAGREDIDVR 368

Query: 241 MLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEA 300
           MLGSGRPFL+EIQNAR +PSE+I+ E++SKIN  ENK +GV+NLKVVGS+GWAL+ EGEA
Sbjct: 369 MLGSGRPFLLEIQNARQVPSELIVKEMESKINGLENKSVGVKNLKVVGSQGWALMHEGEA 428

Query: 301 EKQKQYAALVWTSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEK 360
           EKQKQY ALVW SRPLED D+ +IS L D+KILQRTPIRVLHRRSPLEREKIIHWMKIE+
Sbjct: 429 EKQKQYCALVWISRPLEDEDMQTISLLNDMKILQRTPIRVLHRRSPLEREKIIHWMKIER 488

Query: 361 VAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLG 400
           +A SSQY+LLHLCTQAGTYIKEFVHGDLGRT PS+GSIL CRAEILQLDVTD+KMDC + 
Sbjct: 489 IAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTQPSVGSILGCRAEILQLDVTDVKMDCFVT 548

[Close]

BLAST of Cucsa.271920 vs. TrEMBL
Match: A0A0B0ME68_GOSAR (Putative tRNA pseudouridine synthase Pus10 OS=Gossypium arboreum GN=F383_17991 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 1.1e-150
Identity = 272/405 (67.16%), Postives = 325/405 (80.25%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           +VKKEGHQ+D FSLEVS+P  ILENE  +   +K++Y SE WFQ +    C+S KD LK 
Sbjct: 140 LVKKEGHQVDGFSLEVSIPQFILENESSLLSGMKKRYESEPWFQERLLSKCVSVKDVLKF 199

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
            ITKPLETLLD K+S+S  RIRLTY+H  A     NS++RNQ GFK RKI   +   +++
Sbjct: 200 AITKPLETLLDTKASASSFRIRLTYTHKMALE---NSVERNQ-GFKRRKIGTENGLQNVN 259

Query: 121 NCNSVAD-DCIN-PSQEVV---------FPQETIKEPCHLALTCYRTSIYIVGRYIKYSR 180
           + + VA+ DC + P+ E +          P + + EPCHL   CYRT IY+ GRY+KYSR
Sbjct: 260 DESVVANKDCSDYPTNETIAVTGRSSLKVPIDKVSEPCHLVYLCYRTHIYLCGRYLKYSR 319

Query: 181 NVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVE 240
           NVSQTRW+I +ERMGEASVEEI+G+NILP CRGD+YKFHAAGRED+DVRMLGSGRPFL+E
Sbjct: 320 NVSQTRWIIDKERMGEASVEEIIGSNILPMCRGDNYKFHAAGREDIDVRMLGSGRPFLLE 379

Query: 241 IQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVW 300
           IQNAR +PS+  + EI+SKIN  ENKL+GV+NL+VVGS+GW L++EGEAEKQKQY ALVW
Sbjct: 380 IQNARQVPSKETVKEIESKINGLENKLVGVKNLQVVGSQGWTLMREGEAEKQKQYCALVW 439

Query: 301 TSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLH 360
            SRPLED D+ SIS L D++ILQ+TPIRVLHRRSPLEREKIIHWMKIE++AESSQY+LLH
Sbjct: 440 ISRPLEDEDVCSISLLNDMQILQKTPIRVLHRRSPLEREKIIHWMKIERIAESSQYFLLH 499

Query: 361 LCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMD 395
           LCTQAGTYIKEFVHGD GRT PSIGSIL CRAEILQLDVTD+KMD
Sbjct: 500 LCTQAGTYIKEFVHGDFGRTQPSIGSILGCRAEILQLDVTDVKMD 540

[Close]

BLAST of Cucsa.271920 vs. TrEMBL
Match: F6H0C9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00500 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 2.0e-149
Identity = 279/421 (66.27%), Postives = 326/421 (77.43%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           +VKKEGH+ D+FSLEVS+P +I ENE  V LY+K+KYGSE WFQ K     +SAKDALK+
Sbjct: 159 LVKKEGHEFDNFSLEVSIPPVIAENEHVVLLYMKKKYGSELWFQEKFLSERISAKDALKL 218

Query: 61  CITKPLETLLDCKSS-SSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRK---------- 120
            +  PLE LLD KSS SS  RIRLTY+ P+AS  N N  +R+Q G K R+          
Sbjct: 219 SLCNPLEKLLDVKSSGSSTFRIRLTYAQPRASGKNQNITERSQ-GCKRRRTGTENIFSTV 278

Query: 121 ---IVGSDEPSDISNCNSVA-----DDCINPSQE---VVFPQETIKEPCHLALTCYRTSI 180
              +V   E SDIS   + A      D +  ++      FP E + +PCHLA  CYRT I
Sbjct: 279 HGSVVDGIECSDISTSEADAGIRKPSDGLQDNENSDCFKFPLEKVNQPCHLAFLCYRTHI 338

Query: 181 YIVGRYIKYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVR 240
           YI GRY+KYSRNVSQTRW+I +ERMGEASVEEI+G NILP C GD+YKFHAAGRED++VR
Sbjct: 339 YIGGRYLKYSRNVSQTRWIIDDERMGEASVEEIIGGNILPMCLGDNYKFHAAGREDINVR 398

Query: 241 MLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEA 300
           MLGSGRPFLVEIQN+R +PSE +I EI+ KIN+ ENKL+ V+NLK+V S GW+L+QEGE 
Sbjct: 399 MLGSGRPFLVEIQNSRHVPSEALIKEIEVKINNLENKLVRVKNLKLVDSHGWSLMQEGEE 458

Query: 301 EKQKQYAALVWTSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEK 360
           EKQKQYAALVW  RPL+D D+ +ISSLKD KILQRTPIRVLHRRSPLEREKIIHWMKIEK
Sbjct: 459 EKQKQYAALVWIDRPLKDEDMQAISSLKDKKILQRTPIRVLHRRSPLEREKIIHWMKIEK 518

Query: 361 VAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLG 400
           +A SSQY+LLHLCTQAGTYIKEFVHGDLGRTHPS+GSIL CRAEILQLDVT++KMDC L 
Sbjct: 519 IAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSVGSILGCRAEILQLDVTEVKMDCFLD 578

[Close]

BLAST of Cucsa.271920 vs. TAIR10
Match: AT1G20410.1 (AT1G20410.1 Pseudouridine synthase family protein)

HSP 1 Score: 455.7 bits (1171), Expect = 3.0e-128
Identity = 235/393 (59.80%), Postives = 290/393 (73.79%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           +VK++ H+ DSF LEVSVPS I+ENE+ +  YLK KY +E W Q       +S KDALK+
Sbjct: 132 LVKQDRHEFDSFGLEVSVPSTIMENERALLSYLKGKYSTEVWLQRDK----ISVKDALKV 191

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
            +   L+  L  +S SS   IRLTY+  KAS+    + +   +  K RK       +D  
Sbjct: 192 LLLDQLKASLGAESDSSSFHIRLTYT--KASDEAQGASETTHES-KRRK-------TDAE 251

Query: 121 NCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGE 180
           N      +CI+ +       E + EPC  ++ C R  I+  GRY KYSRNVSQ+RW+I +
Sbjct: 252 N----GSNCISENSF-----EKVYEPCIFSVHCNRMPIFFSGRYFKYSRNVSQSRWIIDD 311

Query: 181 ERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEM 240
           ERMGEASVEEILG NILP C GDSYKFHAAGRED+DVRMLGSGRPFL+E+QN+R LPSE 
Sbjct: 312 ERMGEASVEEILGGNILPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQ 371

Query: 241 IINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLL 300
            + E++ KIN SE KL+GV++LK +GS+ WA+++EGEAEKQKQY ALVW SRPLE+ D  
Sbjct: 372 SLKEVEEKINKSEKKLVGVKDLKCIGSQCWAMMREGEAEKQKQYVALVWISRPLEEKDFN 431

Query: 301 SISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKE 360
           SIS LK+LKILQ+TP+RVLHRRSPL+REKIIHWMK+EK+   S Y+LLHLCTQAGTYIKE
Sbjct: 432 SISCLKELKILQKTPVRVLHRRSPLDREKIIHWMKVEKIKGHSHYFLLHLCTQAGTYIKE 491

Query: 361 FVHGDLGRTHPSIGSILSCRAEILQLDVTDIKM 394
           FVHGDLGRT PS+GSIL CRAEI+QLDVTD+KM
Sbjct: 492 FVHGDLGRTTPSMGSILGCRAEIIQLDVTDVKM 501

[Close]

BLAST of Cucsa.271920 vs. NCBI nr
Match: gi|778697087|ref|XP_011654255.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis sativus])

HSP 1 Score: 803.5 bits (2074), Expect = 1.7e-229
Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI
Sbjct: 123 MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 182

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
           CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS
Sbjct: 183 CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 242

Query: 121 NCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGE 180
           NCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGE
Sbjct: 243 NCNSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVIGE 302

Query: 181 ERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEM 240
           ERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEM
Sbjct: 303 ERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEM 362

Query: 241 IINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLL 300
           IINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLL
Sbjct: 363 IINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDADLL 422

Query: 301 SISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKE 360
           SISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKE
Sbjct: 423 SISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYIKE 482

Query: 361 FVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 400
           FVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE
Sbjct: 483 FVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 521

[Close]

BLAST of Cucsa.271920 vs. NCBI nr
Match: gi|659104373|ref|XP_008452922.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis melo])

HSP 1 Score: 780.8 bits (2015), Expect = 1.1e-222
Identity = 387/401 (96.51%), Postives = 392/401 (97.76%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI
Sbjct: 123 MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 182

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
           CITKPLETLLDCKSSSSGLRIRLTYSHPKASN NGNSIKRNQDGFKMRKI+GSDEPSDIS
Sbjct: 183 CITKPLETLLDCKSSSSGLRIRLTYSHPKASNGNGNSIKRNQDGFKMRKIIGSDEPSDIS 242

Query: 121 NCN--SVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRYIKYSRNVSQTRWVI 180
           NCN  SVADDCINPSQEV+FPQETIKEPCHLALTCYRTSIY+ GRYIKYSRNVSQTRWVI
Sbjct: 243 NCNVNSVADDCINPSQEVIFPQETIKEPCHLALTCYRTSIYMFGRYIKYSRNVSQTRWVI 302

Query: 181 GEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPS 240
           GEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPS
Sbjct: 303 GEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPS 362

Query: 241 EMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDAD 300
           EMIINEIQSKINS E KL+GVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLED D
Sbjct: 363 EMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEGEAEKQKQYAALVWTSRPLEDDD 422

Query: 301 LLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQYYLLHLCTQAGTYI 360
            LSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVA+SSQYYLLHLCTQAGTYI
Sbjct: 423 FLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAKSSQYYLLHLCTQAGTYI 482

Query: 361 KEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 400
           KEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHL E
Sbjct: 483 KEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLAE 523

[Close]

BLAST of Cucsa.271920 vs. NCBI nr
Match: gi|307136310|gb|ADN34134.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 678.7 bits (1750), Expect = 6.2e-192
Identity = 354/415 (85.30%), Postives = 357/415 (86.02%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI
Sbjct: 123 MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 182

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKI---------- 120
           CITKPLETLLDCKSSSSGLRIRLTYSHPKASN NGNSIKRNQDGFKMRKI          
Sbjct: 183 CITKPLETLLDCKSSSSGLRIRLTYSHPKASNGNGNSIKRNQDGFKMRKISNDCSLETID 242

Query: 121 ----VGSDEPSDISNC--NSVADDCINPSQEVVFPQETIKEPCHLALTCYRTSIYIVGRY 180
               VGSDEPSDISNC  NSVADDCINPSQEV+FPQET                      
Sbjct: 243 DSIAVGSDEPSDISNCNVNSVADDCINPSQEVIFPQET---------------------- 302

Query: 181 IKYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGR 240
             YSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAA            GR
Sbjct: 303 --YSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAA------------GR 362

Query: 241 PFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQKQY 300
           PFLVEIQNARLLPSEMIINEIQSKINS E KL+GVRNLKVVGSEGWALVQEGEAEKQKQY
Sbjct: 363 PFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEGEAEKQKQY 422

Query: 301 AALVWTSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAESSQ 360
           AALVWTSRPLED D LSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVA+SSQ
Sbjct: 423 AALVWTSRPLEDDDFLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAKSSQ 482

Query: 361 YYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 400
           YYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHL E
Sbjct: 483 YYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLAE 501

[Close]

BLAST of Cucsa.271920 vs. NCBI nr
Match: gi|590594775|ref|XP_007017946.1| (Pseudouridine synthase family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 542.3 bits (1396), Expect = 6.9e-151
Identity = 274/421 (65.08%), Postives = 325/421 (77.20%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           +VK+EGHQID FSLEVSVP +ILENE  +  ++K+KY SE WFQ +    C S KD LK 
Sbjct: 129 LVKQEGHQIDGFSLEVSVPPLILENESSLLSHMKKKYESEPWFQERLLSKCHSVKDVLKF 188

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
            ITKPLETLL  K+S+S  RIRLTY+H +AS    NS++RNQ+  K RK    +   +++
Sbjct: 189 AITKPLETLLGVKASASSFRIRLTYTHKRASKKVQNSVERNQE-CKRRKTGTENALHNVN 248

Query: 121 NCNSVAD-DCIN---------------------PSQEVVFPQETIKEPCHLALTCYRTSI 180
           + + +AD DC                        S+    P E + EPCHL   C RT I
Sbjct: 249 DESVIADKDCSGYSTIETNSVTGIFSNGVQDQETSEHFESPIEKVSEPCHLVYVCCRTHI 308

Query: 181 YIVGRYIKYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVR 240
           Y+ GRY+KYSRNVSQTRW+I EERMGEASVEEI+G+NILP C+GD+YKFHAAGRED+DVR
Sbjct: 309 YLCGRYLKYSRNVSQTRWIIDEERMGEASVEEIIGSNILPICQGDNYKFHAAGREDIDVR 368

Query: 241 MLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEA 300
           MLGSGRPFL+EIQNAR +PSE+I+ E++SKIN  ENK +GV+NLKVVGS+GWAL+ EGEA
Sbjct: 369 MLGSGRPFLLEIQNARQVPSELIVKEMESKINGLENKSVGVKNLKVVGSQGWALMHEGEA 428

Query: 301 EKQKQYAALVWTSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEK 360
           EKQKQY ALVW SRPLED D+ +IS L D+KILQRTPIRVLHRRSPLEREKIIHWMKIE+
Sbjct: 429 EKQKQYCALVWISRPLEDEDMQTISLLNDMKILQRTPIRVLHRRSPLEREKIIHWMKIER 488

Query: 361 VAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLG 400
           +A SSQY+LLHLCTQAGTYIKEFVHGDLGRT PS+GSIL CRAEILQLDVTD+KMDC + 
Sbjct: 489 IAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTQPSVGSILGCRAEILQLDVTDVKMDCFVT 548

[Close]

BLAST of Cucsa.271920 vs. NCBI nr
Match: gi|1009108927|ref|XP_015887395.1| (PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 541.6 bits (1394), Expect = 1.2e-150
Identity = 269/417 (64.51%), Postives = 319/417 (76.50%), Query Frame = 1


Query: 1   MVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKI 60
           ++K+EG+QID FSLEVS+P +I ENE  VWL LK+K+GSE WFQGK    C+S KDALKI
Sbjct: 138 LIKQEGYQIDGFSLEVSIPPVIQENESSVWLCLKKKFGSELWFQGKSQSECISVKDALKI 197

Query: 61  CITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGNSIKRNQDGFKMRKIVGSDEPSDIS 120
            I KPLE++L CKSS S   +RLTYSHP AS +  NSI +NQ GFK RK  GS       
Sbjct: 198 SIIKPLESMLGCKSSISTFHVRLTYSHPVASTAIQNSINKNQ-GFKRRK-TGSGNGLKTV 257

Query: 121 NCNSVADDCINPSQEVV------------------FPQETIKEPCHLALTCYRTSIYIVG 180
           + + +  D      +VV                  FP + I +PC L  +CYRT IY  G
Sbjct: 258 DDDLICSDFSMSDVDVVVERPLESLQANESSESFKFPSKLISKPCQLVFSCYRTHIYFGG 317

Query: 181 RYIKYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGS 240
           RY+KYSRNVSQTRW++ +ERMGEASVEE++G+NILP C GDSYKFHAAGRED+DVRMLGS
Sbjct: 318 RYLKYSRNVSQTRWIVDDERMGEASVEELIGSNILPICHGDSYKFHAAGREDIDVRMLGS 377

Query: 241 GRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEGEAEKQK 300
           GRPFLVEIQNARL+PSE  +  I+  IN  E KL+GV+NLK+VGSEGW L++EGE+EKQK
Sbjct: 378 GRPFLVEIQNARLMPSEDSVKNIEKHINKMEKKLVGVKNLKMVGSEGWTLMREGESEKQK 437

Query: 301 QYAALVWTSRPLEDADLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAES 360
           QYAALVW SRPL+D D   ISSLKD+ I+Q+TP+RVLHRRSPL REKIIHWM++E++   
Sbjct: 438 QYAALVWISRPLKDEDFQCISSLKDMHIMQKTPVRVLHRRSPLAREKIIHWMRLERICGH 497

Query: 361 SQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLGE 400
           SQY+LLHLCTQAGTYIKEFVHGDLGRT+PSIGSIL CRAEILQLDVTD+KMDC L E
Sbjct: 498 SQYFLLHLCTQAGTYIKEFVHGDLGRTYPSIGSILDCRAEILQLDVTDVKMDCFLTE 552

The following BLAST results are available for this feature:

BLAST of Cucsa.271920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUS10_MOUSE	1.3e-61	38.10	Putative tRNA pseudouridine synthase Pus10 OS=Mus musculus GN=Pus10 PE=1 SV=1	[more]
PUS10_HUMAN	3.3e-60	46.90	Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1	[more]
PUS10_XENLA	1.2e-59	35.88	Putative tRNA pseudouridine synthase Pus10 OS=Xenopus laevis GN=pus10 PE=2 SV=1	[more]
PUS10_DROME	1.1e-36	29.87	Putative tRNA pseudouridine synthase Pus10 OS=Drosophila melanogaster GN=Pus10 P...	[more]
PUS10_THEPD	6.2e-35	36.73	tRNA pseudouridine synthase Pus10 OS=Thermofilum pendens (strain Hrk 5) GN=pus10...	[more]

BLAST of Cucsa.271920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L378_CUCSA	1.2e-229	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G653400 PE=4 SV=1	[more]
E5GCD5_CUCME	4.3e-192	85.30	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061FDT4_THECC	4.8e-151	65.08	Pseudouridine synthase family protein, putative isoform 1 OS=Theobroma cacao GN=...	[more]
A0A0B0ME68_GOSAR	1.1e-150	67.16	Putative tRNA pseudouridine synthase Pus10 OS=Gossypium arboreum GN=F383_17991 P...	[more]
F6H0C9_VITVI	2.0e-149	66.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00500 PE=4 SV=...	[more]

BLAST of Cucsa.271920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20410.1	3.0e-128	59.80	Pseudouridine synthase family protein	[more]

BLAST of Cucsa.271920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697087\|ref\|XP_011654255.1\|	1.7e-229	100.00	PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis sativus]	[more]
gi\|659104373\|ref\|XP_008452922.1\|	1.1e-222	96.51	PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis melo]	[more]
gi\|307136310\|gb\|ADN34134.1\|	6.2e-192	85.30	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|590594775\|ref\|XP_007017946.1\|	6.9e-151	65.08	Pseudouridine synthase family protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|1009108927\|ref\|XP_015887395.1\|	1.2e-150	64.51	PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X1 [Ziziphus jujub...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020103	PsdUridine_synth_cat_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0009451	RNA modification

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0009982	pseudouridine synthase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0016570	histone modification
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.271920.1	Cucsa.271920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020103	Pseudouridine synthase, catalytic domain	unknown	SSF55120	Pseudouridine synthase	coord: 278..391 score: 2.3
None	No IPR available	PANTHER	PTHR21568	UNCHARACTERIZED	coord: 1..399 score: 5.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.271920	Cla007406	Watermelon (97103) v1	cgywmB499
Cucsa.271920	Csa4G653400	Cucumber (Chinese Long) v2	cgycuB387
Cucsa.271920	MELO3C017004	Melon (DHL92) v3.5.1	cgymeB454
Cucsa.271920	ClCG05G015260	Watermelon (Charleston Gray)	cgywcgB471
Cucsa.271920	CSPI04G26700	Wild cucumber (PI 183967)	cgycpiB409
Cucsa.271920	CmaCh09G000720	Cucurbita maxima (Rimu)	cgycmaB0751
Cucsa.271920	CmaCh01G019950	Cucurbita maxima (Rimu)	cgycmaB0755
Cucsa.271920	CmoCh09G000730	Cucurbita moschata (Rifu)	cgycmoB0742
Cucsa.271920	CmoCh01G020570	Cucurbita moschata (Rifu)	cgycmoB0746
Cucsa.271920	Lsi04G017890	Bottle gourd (USVL1VR-Ls)	cgylsiB436
Cucsa.271920	Cp4.1LG02g08240	Cucurbita pepo (Zucchini)	cgycpeB0708
Cucsa.271920	Cp4.1LG06g00380	Cucurbita pepo (Zucchini)	cgycpeB0712
Cucsa.271920	MELO3C017004.2	Melon (DHL92) v3.6.1	cgymedB450
Cucsa.271920	CsaV3_4G037060	Cucumber (Chinese Long) v3	cgycucB415
Cucsa.271920	Cla97C05G096360	Watermelon (97103) v2	cgywmbB472
Cucsa.271920	Bhi09G002422	Wax gourd	cgywgoB550
Cucsa.271920	Carg08646	Silver-seed gourd	carcgyB0125
Cucsa.271920	Carg21388	Silver-seed gourd	carcgyB0417

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None