Cucsa.264050 (gene) Cucumber (Gy14) v1

NameCucsa.264050
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold02330 : 183692 .. 183904 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTCTACTTGGTTCACAAGATGTGTGGGACATTGTTAATAATGGTTATGAAGAACCAGAAAGTGATACGACTTTGAGTCAAGCTCAACGAGAAAAATTACAAAATACAAAGAAAAGAGATCAAAAGACTCTCACCATCATTCATCAAGCGATTGATGATTCAAATTTTGAGAAAATTTCTGAAGCAACTACTGAACATCAAGCATGA

mRNA sequence

atgaaagttctacttggttcacaagatgtgtgggacattgttaataatggttatgaagaaccagaaagtgatacgactttgagtcaagctcaacgagaaaaattacaaaatacaaagaaaagagatcaaaagactctcaccatcattcatcaagcgattgatgattcaaattttgagaaaatttctgaagcaactactgaacatcaagcatga

Coding sequence (CDS)

ATGAAAGTTCTACTTGGTTCACAAGATGTGTGGGACATTGTTAATAATGGTTATGAAGAACCAGAAAGTGATACGACTTTGAGTCAAGCTCAACGAGAAAAATTACAAAATACAAAGAAAAGAGATCAAAAGACTCTCACCATCATTCATCAAGCGATTGATGATTCAAATTTTGAGAAAATTTCTGAAGCAACTACTGAACATCAAGCATGA

Protein sequence

MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEKISEATTEHQA*
BLAST of Cucsa.264050 vs. TrEMBL
Match: A0A0B2SIS1_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_048547 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLG+QDVWDIV NG+EE + + +LSQ  +E L+ ++KRD+K L +I+Q++D+  FEK
Sbjct: 23 MKALLGAQDVWDIVENGFEE-QDEASLSQGVKETLKESRKRDKKALFLIYQSVDEDTFEK 82

Query: 61 ISEATTEHQA 71
          IS ATT  +A
Sbjct: 83 ISNATTAKEA 91

BLAST of Cucsa.264050 vs. TrEMBL
Match: A0A0B2NTW4_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_000754 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLG+QDVWDIV NG+EE + + +LSQ  +E L+ ++KRD+K L +I+Q++D+  FEK
Sbjct: 23 MKALLGAQDVWDIVENGFEE-QDEASLSQGVKETLKESRKRDKKALFLIYQSVDEDTFEK 82

Query: 61 ISEATTEHQA 71
          IS ATT  +A
Sbjct: 83 ISNATTAKEA 91

BLAST of Cucsa.264050 vs. TrEMBL
Match: A0A0B2PSL4_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_034423 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.2e-13
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLG+QDVWDIV NG+EE + + +LSQ  +E L+ ++KRD+K L +I+Q +D+  FEK
Sbjct: 23 MKALLGAQDVWDIVENGFEE-QDEASLSQGVKETLKESRKRDKKALFLIYQLVDEDTFEK 82

Query: 61 ISEATTEHQA 71
          IS ATT  +A
Sbjct: 83 ISNATTAKEA 91

BLAST of Cucsa.264050 vs. TrEMBL
Match: M1DYX9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046219 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          M+V+LGSQD+WDIV+ GY +P ++  LS  ++E L  T+K+DQ+ LT+IHQ +DD  F K
Sbjct: 1  MRVILGSQDIWDIVDKGYTKPANEENLSSNEKEVLLKTRKKDQQALTLIHQCLDDGMFVK 60

Query: 61 ISEATTEHQA 71
          +++AT   +A
Sbjct: 61 VADATFSKEA 70

BLAST of Cucsa.264050 vs. TrEMBL
Match: A0A0B2PEQ3_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_048534 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-12
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLGSQD W+IV  GY +P+++  LS  ++E L  +KK+DQ+ LT IHQ +D++ FE 
Sbjct: 9  MKALLGSQDAWEIVEKGYTQPQNEAILSPNEKETLLKSKKKDQQALTFIHQGLDEAMFEL 68

Query: 61 ISEATTEHQA 71
          +S ATT  +A
Sbjct: 69 VSNATTSKEA 78

BLAST of Cucsa.264050 vs. TAIR10
Match: AT1G48720.1 (AT1G48720.1 unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-15
Identity = 32/66 (48.48%), Postives = 52/66 (78.79%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK +LG+ DVW+IV  G+ EPE++ +LSQ Q++ L++++KRD+K L +I+Q +D+  FEK
Sbjct: 25 MKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEK 84

Query: 61 ISEATT 67
          + EAT+
Sbjct: 85 VVEATS 90

BLAST of Cucsa.264050 vs. NCBI nr
Match: gi|659112423|ref|XP_008456214.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like, partial [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-24
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLGSQDVWDIV+NGYEEPESD +L+QAQRE LQNT+K+DQK LTIIHQAIDD+NFEK
Sbjct: 27 MKALLGSQDVWDIVSNGYEEPESDASLNQAQREALQNTRKKDQKALTIIHQAIDDNNFEK 86

Query: 61 ISEATTEHQA 71
          IS ATT +QA
Sbjct: 87 ISGATTAYQA 96

BLAST of Cucsa.264050 vs. NCBI nr
Match: gi|659087164|ref|XP_008444306.1| (PREDICTED: uncharacterized protein LOC103487674 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLGSQDVW+IVNN  EEPESD  LSQAQRE LQN +K+DQK LTIIHQ I D NFEK
Sbjct: 1  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEK 60

Query: 61 ISEATTEHQA 71
           S ATT   A
Sbjct: 61 TSGATTARHA 70

BLAST of Cucsa.264050 vs. NCBI nr
Match: gi|694312543|ref|XP_009362729.1| (PREDICTED: uncharacterized protein LOC103952776 [Pyrus x bretschneideri])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-15
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLG+ DVW+IV  GY EPE + TLSQ Q+E L++++KRD+K L +I+QA+DD+ FEK
Sbjct: 26 MKALLGAHDVWEIVEKGYTEPEDEATLSQPQKESLKDSRKRDKKALYLIYQALDDNGFEK 85

Query: 61 ISEATTEHQA 71
          +S AT+  QA
Sbjct: 86 VSSATSTKQA 95

BLAST of Cucsa.264050 vs. NCBI nr
Match: gi|694439351|ref|XP_009346568.1| (PREDICTED: uncharacterized protein LOC103938288 [Pyrus x bretschneideri])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLG+ DVW++V  GY EPE + TLSQ Q+E L++++KRD+K L +I+QA+DD+ FEK
Sbjct: 26 MKALLGAHDVWEVVEKGYTEPEDEATLSQPQKESLKDSRKRDKKALYLIYQALDDNGFEK 85

Query: 61 ISEATTEHQA 71
          +S AT+  QA
Sbjct: 86 VSSATSAKQA 95

BLAST of Cucsa.264050 vs. NCBI nr
Match: gi|694432294|ref|XP_009343509.1| (PREDICTED: uncharacterized protein LOC103935466 [Pyrus x bretschneideri])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 1

Query: 1  MKVLLGSQDVWDIVNNGYEEPESDTTLSQAQREKLQNTKKRDQKTLTIIHQAIDDSNFEK 60
          MK LLG+ DVW++V  GY EPE + TLSQ Q+E L++++KRD+K L +I+QA+DD+ FEK
Sbjct: 26 MKALLGAHDVWEVVEKGYTEPEDEATLSQPQKESLKDSRKRDKKALYLIYQALDDNGFEK 85

Query: 61 ISEATTEHQA 71
          +S AT+  QA
Sbjct: 86 VSSATSAKQA 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0B2SIS1_GLYSO5.4e-1354.29Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_048547 PE=4 SV=1[more]
A0A0B2NTW4_GLYSO5.4e-1354.29Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_000754 PE=4 SV=1[more]
A0A0B2PSL4_GLYSO9.2e-1354.29Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_034423 PE=4 SV=1[more]
M1DYX9_SOLTU1.2e-1248.57Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046219 PE=4 SV=1[more]
A0A0B2PEQ3_GLYSO1.6e-1250.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
Match NameE-valueIdentityDescription
AT1G48720.15.1e-1548.48 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112423|ref|XP_008456214.1|3.3e-2481.43PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like, partial [Cucumis melo... [more]
gi|659087164|ref|XP_008444306.1|1.2e-1872.86PREDICTED: uncharacterized protein LOC103487674 [Cucumis melo][more]
gi|694312543|ref|XP_009362729.1|2.2e-1557.14PREDICTED: uncharacterized protein LOC103952776 [Pyrus x bretschneideri][more]
gi|694439351|ref|XP_009346568.1|2.8e-1555.71PREDICTED: uncharacterized protein LOC103938288 [Pyrus x bretschneideri][more]
gi|694432294|ref|XP_009343509.1|2.8e-1555.71PREDICTED: uncharacterized protein LOC103935466 [Pyrus x bretschneideri][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.264050.1Cucsa.264050.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None