Cucsa.261770 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.261770
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptionnicotinamidase 1
Locationscaffold02265 : 321291 .. 322062 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATCTTCGAACGACACCCGTTCCTGTCACCGTCACCGCCACCGCCACCACCCTCTCATTCTTGTCTCCTCACTCTAGCGCCGCCGCAACCTCCTCTATCGGGCAACAAAACCTCTTCTGCCGTAACCTGTTCAATTTGTGCATGTCATCATAGAGAAGTAAATTTGGGTACGCTTTCTTCTTTTGAACATGTATAGATCCCAGTGCTGAGAATTTGAAGGGACATATGTGTGCTGGATTTTGTATGTTCAACATTATTAGCAAGAAATTGCGATTTCCTTTCACCAGTAGAGGATGTGATAGTATATTTTGGTGGCTGCACCACTTATGATCTTCCCGTAGCTGTGGCCAAGACTTTTAGGAGATGCCATTGCGCACCCACAGGTACCCAAATTCTTAATCCATTGTTGATTTTCATACAAATTTAGCTTCTCTTATATTTAATATTTAATATCATGAAAAAGAACCGTTTTGATTTTGTTTTtATCTTCTCTTTATTTTtCCCTTTTTTtGTCTCTTCATTTGTTCAAACCTTATTTTTATTGGAGGCGATAGGACCCGCTGAAATCACACATCACTTGCTTTACTTTATTGATCTTCTAATTGTTGTAGTGAATTAGAAAGATTCTAATCAGTGATACAATACATTTTTTCTGGTTTAAGCAATGTTAGTAATGTTGGTTCAGGAGTTGATGCCACATAGGCCTGTACATAGCAAGGGGGAGAGGAGCCAAGGTGGTATCAGAGGTTTCAATTAAATCACTTTGA

mRNA sequence

ATGACCATCTTCGAACGACACCCGTTCCTGTCACCGTCACCGCCACCGCCACCACCCTCTCATTCTTGTCTCCTCACTCTAGCGCCGCCGCAACCTCCTCTATCGGGCAACAAAACCTCTTCTGCCGTAACCTGTTCAATTTGTGCATGTCATCATAGAGAAGTAAATTTGGCAAGAAATTGCGATTTCCTTTCACCAGTAGAGGATGTGATAGTATATTTTGGTGGCTGCACCACTTATGATCTTCCCGTAGCTGTGGCCAAGACTTTTAGGAGATGCCATTGCGCACCCACAGGCCTGTACATAGCAAGGGGGAGAGGAGCCAAGGTGGTATCAGAGGTTTCAATTAAATCACTTTGA

Coding sequence (CDS)

ATGACCATCTTCGAACGACACCCGTTCCTGTCACCGTCACCGCCACCGCCACCACCCTCTCATTCTTGTCTCCTCACTCTAGCGCCGCCGCAACCTCCTCTATCGGGCAACAAAACCTCTTCTGCCGTAACCTGTTCAATTTGTGCATGTCATCATAGAGAAGTAAATTTGGCAAGAAATTGCGATTTCCTTTCACCAGTAGAGGATGTGATAGTATATTTTGGTGGCTGCACCACTTATGATCTTCCCGTAGCTGTGGCCAAGACTTTTAGGAGATGCCATTGCGCACCCACAGGCCTGTACATAGCAAGGGGGAGAGGAGCCAAGGTGGTATCAGAGGTTTCAATTAAATCACTTTGA

Protein sequence

MTIFERHPFLSPSPPPPPPSHSCLLTLAPPQPPLSGNKTSSAVTCSICACHHREVNLARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAPTGLYIARGRGAKVVSEVSIKSL*
Homology
[Close]
BLAST of Cucsa.261770 vs. Swiss-Prot
Match: NIC1_ARATH (Nicotinamidase 1 OS=Arabidopsis thaliana GN=NIC1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN   LSPVEDV+VY  GC T+DLP+ VAK  +     P       GLY+A+GRGA+VV
Sbjct: 178 ARNHGVLSPVEDVVVYSRGCATFDLPLHVAKDIKGAQAHPQELMHHVGLYMAKGRGAQVV 237

Query: 118 SEVSIKS 119
           S++S ++
Sbjct: 238 SKISFET 244

[Close]
BLAST of Cucsa.261770 vs. TrEMBL
Match: A0A0A0KIY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G066910 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 

Query: 57  LARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAPTGL 101
           LARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAPTG+
Sbjct: 36  LARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAPTGV 79

[Close]
BLAST of Cucsa.261770 vs. TrEMBL
Match: A0A0A0KG59_CUCSA (Catalytic OS=Cucumis sativus GN=Csa_6G498960 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN  FLSP+EDVIVY GGC TYDLPVAVAKT       P       GLYIARGRGAKVV
Sbjct: 175 ARNRGFLSPLEDVIVYSGGCATYDLPVAVAKTLGDAIAHPQELMHHVGLYIARGRGAKVV 234

Query: 118 SEVSIKS 119
           SEVS KS
Sbjct: 235 SEVSTKS 241

[Close]
BLAST of Cucsa.261770 vs. TrEMBL
Match: A0A067KD75_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18704 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN  FLSP+EDV VY   C T+DLPV VA+T +     P       GLY+A+GRGAKVV
Sbjct: 177 ARNRGFLSPLEDVFVYSQACATFDLPVHVARTIKDVTAHPQELMHHIGLYMAKGRGAKVV 236

Query: 118 SEVSIKSL 120
           SEVS  +L
Sbjct: 237 SEVSFSAL 244

[Close]
BLAST of Cucsa.261770 vs. TrEMBL
Match: U5GIT6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s19110g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-09
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP-----TGLYIARGRGAKVVS 117
           ARN  FLSP+EDV+VY   C TYDLP+ +A+T +     P      GLY+A+GRGAKVVS
Sbjct: 178 ARNRGFLSPLEDVVVYSRACATYDLPLHIAETLKDTIAHPQLMHHIGLYMAQGRGAKVVS 237

Query: 118 EVSIKSL 120
           EVS  +L
Sbjct: 238 EVSFGAL 244

[Close]
BLAST of Cucsa.261770 vs. TrEMBL
Match: B9H6P1_POPTR (Isochorismatase hydrolase family protein OS=Populus trichocarpa GN=POPTR_0005s19110g PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN  FLSP+EDV+VY   C TYDLP+ +A+T +     P       GLY+A+GRGAKVV
Sbjct: 178 ARNRGFLSPLEDVVVYSRACATYDLPLHIAETLKDTIAHPQELMHHIGLYMAQGRGAKVV 237

Query: 118 SEVSIKSL 120
           SEVS  +L
Sbjct: 238 SEVSFGAL 245

[Close]
BLAST of Cucsa.261770 vs. TAIR10
Match: AT2G22570.1 (AT2G22570.1 nicotinamidase 1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN   LSPVEDV+VY  GC T+DLP+ VAK  +     P       GLY+A+GRGA+VV
Sbjct: 178 ARNHGVLSPVEDVVVYSRGCATFDLPLHVAKDIKGAQAHPQELMHHVGLYMAKGRGAQVV 237

Query: 118 SEVSIKS 119
           S++S ++
Sbjct: 238 SKISFET 244

[Close]
BLAST of Cucsa.261770 vs. NCBI nr
Match: gi|700194508|gb|KGN49685.1| (hypothetical protein Csa_5G066910 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 

Query: 57  LARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAPTGL 101
           LARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAPTG+
Sbjct: 36  LARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAPTGV 79

[Close]
BLAST of Cucsa.261770 vs. NCBI nr
Match: gi|449451387|ref|XP_004143443.1| (PREDICTED: nicotinamidase 1 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN  FLSP+EDVIVY GGC TYDLPVAVAKT       P       GLYIARGRGAKVV
Sbjct: 175 ARNRGFLSPLEDVIVYSGGCATYDLPVAVAKTLGDAIAHPQELMHHVGLYIARGRGAKVV 234

Query: 118 SEVSIKS 119
           SEVS KS
Sbjct: 235 SEVSTKS 241

[Close]
BLAST of Cucsa.261770 vs. NCBI nr
Match: gi|659079951|ref|XP_008440534.1| (PREDICTED: uncharacterized protein LOC103484929 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-13
Identity = 46/68 (67.65%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN  FLSP+EDVIVY GGC TYDLPV+VAKT       P       GLY+ARGRGAKVV
Sbjct: 175 ARNRGFLSPLEDVIVYSGGCATYDLPVSVAKTLGDAIAHPQELMHHIGLYMARGRGAKVV 234

Query: 118 SEVSIKSL 120
           SEVSIK L
Sbjct: 235 SEVSIKPL 242

[Close]
BLAST of Cucsa.261770 vs. NCBI nr
Match: gi|645219519|ref|XP_008236202.1| (PREDICTED: uncharacterized protein LOC103334991 [Prunus mume])

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN   L+P+EDVIVY  GC T+DLPV VAKT +     P       GLYIA+GRGAKVV
Sbjct: 175 ARNRRLLAPLEDVIVYSRGCATFDLPVDVAKTAKDVVAHPQELMHHIGLYIAKGRGAKVV 234

Query: 118 SEVSIKS 119
           SEVS+ +
Sbjct: 235 SEVSLNT 241

[Close]
BLAST of Cucsa.261770 vs. NCBI nr
Match: gi|802673968|ref|XP_012081671.1| (PREDICTED: nicotinamidase 1-like isoform X2 [Jatropha curcas])

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 58  ARNCDFLSPVEDVIVYFGGCTTYDLPVAVAKTFRRCHCAP------TGLYIARGRGAKVV 117
           ARN  FLSP+EDV VY   C T+DLPV VA+T +     P       GLY+A+GRGAKVV
Sbjct: 154 ARNRGFLSPLEDVFVYSQACATFDLPVHVARTIKDVTAHPQELMHHIGLYMAKGRGAKVV 213

Query: 118 SEVSIKSL 120
           SEVS  +L
Sbjct: 214 SEVSFSAL 221

The following BLAST results are available for this feature:
BLAST of Cucsa.261770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NIC1_ARATH2.1e-1050.75Nicotinamidase 1 OS=Arabidopsis thaliana GN=NIC1 PE=1 SV=1[more]
BLAST of Cucsa.261770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIY1_CUCSA1.2e-1797.73Uncharacterized protein OS=Cucumis sativus GN=Csa_5G066910 PE=4 SV=1[more]
A0A0A0KG59_CUCSA1.1e-1370.15Catalytic OS=Cucumis sativus GN=Csa_6G498960 PE=4 SV=1[more]
A0A067KD75_JATCU2.1e-0955.88Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18704 PE=4 SV=1[more]
U5GIT6_POPTR2.7e-0955.22Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s19110g PE=4 SV=1[more]
B9H6P1_POPTR3.6e-0954.41Isochorismatase hydrolase family protein OS=Populus trichocarpa GN=POPTR_0005s19... [more]
BLAST of Cucsa.261770 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22570.11.2e-1150.75 nicotinamidase 1[more]
BLAST of Cucsa.261770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194508|gb|KGN49685.1|1.8e-1797.73hypothetical protein Csa_5G066910 [Cucumis sativus][more]
gi|449451387|ref|XP_004143443.1|1.5e-1370.15PREDICTED: nicotinamidase 1 [Cucumis sativus][more]
gi|659079951|ref|XP_008440534.1|3.4e-1367.65PREDICTED: uncharacterized protein LOC103484929 [Cucumis melo][more]
gi|645219519|ref|XP_008236202.1|2.3e-0958.21PREDICTED: uncharacterized protein LOC103334991 [Prunus mume][more]
gi|802673968|ref|XP_012081671.1|3.0e-0955.88PREDICTED: nicotinamidase 1-like isoform X2 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.261770.1Cucsa.261770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.261770CsaV3_5G015460Cucumber (Chinese Long) v3cgycucB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.261770Wild cucumber (PI 183967)cgycpiB398
Cucsa.261770Cucumber (Chinese Long) v2cgycuB378