Cucsa.261740 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.261740
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02265 : 272990 .. 273417 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGATTCCAATTGCGATTCTAGCAGCATCGACCTATCTGATTCTAATTATCCAACAATAAGATATGAAGTTTCCAAATACACCCACTCAAATGCCACAGTTTCAATTCCAATAAACAACAAAAGCAATGGAGAAACCAAATCAGATTTAAATGTAATGGCGTATGGAGGCGGATGAGTGTAGAAGAAATCAGAATGAATAACAGAATCAAAGAAGAAGCTGTGTGAGAGCTAAATCTCTGAAGCGATTCATTCGGAAGCACATCACCCGTACTATGAAACCATTTGGAATTTGGTTGTAGAGGGCTGGAGAAGCAGGGCAACCTACAGAGAACCTGCAAGTTCTTCAGAGCCACGGATTGAAACTGCTCTCCCCTTTTAATGCCTCAGCCCTCTCTTGATTCGAATGAAAATAACAAAAACAAA

mRNA sequence

ATGAACGATTCCAATTGCGATTCTAGCAGCATCGACCTATCTGATTCTAATTATCCAACAATAAGATATGAAGTTTCCAAATACACCCACTCAAATGCCACAGTTTCAATTCCAATAAACAACAAAAGCAATGGAGAAACCAAATCAGATTTAAATGTAATGGCGTATGGAGGCGGATGAGTGTAGAAGAAATCAGAATGAATAACAGAATCAAAGAAGAAGCTGTGTGAGAGCTAAATCTCTGAAGCGATTCATTCGGAAGCACATCACCCGTACTATGAAACCATTTGGAATTTGGTTGTAGAGGGCTGGAGAAGCAGGGCAACCTACAGAGAACCTGCAAGTTCTTCAGAGCCACGGATTGAAACTGCTCTCCCCTTTTAATGCCTCAGCCCTCTCTTGATTCGAATGAAAATAACAAAAACAAA

Coding sequence (CDS)

ATGAACGATTCCAATTGCGATTCTAGCAGCATCGACCTATCTGATTCTAATTATCCAACAATAAGATATGAAGTTTCCAAATACACCCACTCAAATGCCACAGTTTCAATTCCAATAAACAACAAAAGCAATGGAGAAACCAAATCAGATTTAAATGTAATGGCGTATGGAGGCGGATGA

Protein sequence

MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLNVMAYGGG*
Homology
[Close]
BLAST of Cucsa.261740 vs. TrEMBL
Match: A0A0A0KPM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065150 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLN 53
          MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLN
Sbjct: 21 MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLN 72

[Close]
BLAST of Cucsa.261740 vs. NCBI nr
Match: gi|700194504|gb|KGN49681.1| (hypothetical protein Csa_5G065150 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLN 53
          MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLN
Sbjct: 21 MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLN 72

The following BLAST results are available for this feature:
BLAST of Cucsa.261740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPM5_CUCSA2.0e-21100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065150 PE=4 SV=1[more]
BLAST of Cucsa.261740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194504|gb|KGN49681.1|2.9e-21100.00hypothetical protein Csa_5G065150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.261740.1Cucsa.261740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.261740Csa5G065150Cucumber (Chinese Long) v2cgycuB378
Cucsa.261740CsaV3_5G015420Cucumber (Chinese Long) v3cgycucB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.261740Bottle gourd (USVL1VR-Ls)cgylsiB426
Cucsa.261740Melon (DHL92) v3.6.1cgymedB436
Cucsa.261740Watermelon (97103) v2cgywmbB461
Cucsa.261740Wax gourdcgywgoB536
Cucsa.261740Wild cucumber (PI 183967)cgycpiB398
Cucsa.261740Watermelon (Charleston Gray)cgywcgB460