Cucsa.261680 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.261680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	scaffold02265 : 109052 .. 113649 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGCTCAAAGAAGGCGGGTCAACTAGTAAACCATCTATCCTTGATGGAAAAAACTACTCATATTGGAAAACTCGAATGACGTCATTTATTAAATATATCGATGGGAAGGCTTAAAGAGTTGTTATTTCTGGCTGGAAGCTACTGATGATTACTGTTGATGATAAATATGTTCAAAAGTCTGAAGAGGAATGGACGAATGCAGAAGAACAAGCTTCTTTAGAAAATTTACGAGCTCTTATTGCCATATATGATGGAGTAGATCTGAATGTGTTCAAACTGATAAAAGATGCTTGGAAAGTTCTTGAAGTAGCATTTGAAGGCACATCTAAAGTAAAAATCTCTCAATTGCAACTTTTGGCCTATAAATTTGAATCTTTCAGAATGATGGAAGAATAGATTATTGTTGAATATAATGTGAGAGTGCTGGAAATCACAAATGATTCCTTCAATATTGGCGAGGGAATTCCTAAATCGAAACTTGTAAGAATGGTGTTGTGGTCATTGCCTAGAAAGTTCGATATGAAAGTTACAGCCATTGAAGAAGCACATGACATTACCACCTTGACACTAGATGAATTATTTAGGTCTCTTCGTACCTTTGAAATTTCCTCCCTTTCAATTTGTTCATGAAGAGGTAAATTTTGAGAAAGGTAAATTACCAAATGATAATGTAAATGAGTCCATTGCCCTGTTGACTAAACACTTCTCTAATGTTATAAGAAAAATTAAAAAaCACAAACAATCATGGTTTAAATAATAGAGAACAAAACAATTATAGAAAGAGAGATTTTGACAAACCAAATGGTAGATATAGCAAATCATTCAAAATATAAGAGATGTGGTGGTCATGGCTATTATCAGGCTGATGTCTGACTTACCTGAGGAGACAGAAGAAAAGTTTTGGTGCTACCCTATCTAATGAAGAGTCTGATGTAAGTAACGAGGAAGCAGAATATACCAATGTTGTTATTAGTATTACATCTAAAGATGAATCTGTATTTGGCTTTCAAGATTGAAATTGTCAAACAGAGGATACTCTATCATTTGGTCAGTTGCAACGTCAATGGAAGGAGAATTCGCCAGCTCGAGCTATTCAGAAGGAAAATATACAAAAGTTGCTGGATGAAAATCAACAATTATTAACTGTTATATCATCTTTGAAACCAAAATTGAAAGAAGCGAAAATAGAGTATGAAAAAATGTTCAAATCAGTAAAAATGTTGAATTCTGGCACAAATAGTCTAAATCAGATCCTAAATACAGGTAAAAATAGTTCAAATAAGCATGGTCTTGGTTATAACTCTTTGAAACATGCTTATAAATAGAAGAACTCAATAGTTTTTGTCCCAGCAAAAGACGAGTAATAATGAAGAAAGATCAGTAGGGGAAATAGACAATACATTGATCTATAAAAAaCCAAATGTCTTGATATGTCACTACTGTGAACAAAGGAGCCATATTAGACCCTTTTATCGCAAACTAGAAAGTGACATGATTTATCATCAGAAAATGTCATACATCTCAGAAGGATAAGCCAGTTGCACATATGCTTAAAAGGACTAGGATGATGTGGAAAATTAAGCAATCTTCTGTAAATTATCATATTGCTTTTACTACAATTAAAACTTCAAATGAAGATTGGTAATTTGATAGCGGTTGTTCGAGACACATGACTGGCAATCGTTCATACTTTTCTGAGTTGACAAAATGTTCTTGAGGACATGTAACTTTTGACGATGGAGCAAAAGGAAGAATTTTAGCCAAAGAAAaTATTGTTAATACATATCTTGCTAGACTTGATGACGTGAGATATGTTGAAGGGCTCACAACCAATTTAATTAGCATCAGTCAATTGTGTGACCAAGGTTACACAATGAATTTCTGCAAAGAAGAATGTATTGTGACTGATAATAATAATGCTGAGATTATAAAAGGGATTCGTCAAATTGATAACTGTTATCATTGGATTTCTAACAAAAATATTTTTTGCAACTTGTCTAAGGAAGAACAAACTCAGCTGTGGCATAGGAAACTTGGACATGCAAGTCTCAGTACAGTAAGCAACGATCTGAAACACGATGCTATCTTGAGAATACCAAATCTGGATATAAATAGTCAGTTATTCTATAAAGATTGTCAACGTGGCAAGAAAATCAGAACATCACATAAAAGTATTAGTGAATGCTATACTAATAGAGTTCTTGAATTTCTTCATATGGATCTAATGGGTCCAATGCAAACCAAGAGCCTTGACAGGAAGAAGTATGTATTTATTTGTGTTGATGATTATTCATGGTTTACGTGGGTAAGATTTTTAAGAGGTAAAGTTGAGATTTCTAAAGTGTGTATAAGTTTGTGCCCGAGTCTACAACGTGAGCAGGGAAAGAATATTGTGATAATCCGTAGTGATCATGGAAGGGACATTGAGAATGAAGAATTTGATAATTTATGTGAAAAAGAAGGGATTCATCGTGAATACTCAGCTCCTTTGACTCCTCAACAAAATGGAGTCGTAGAAAGAAAAAaCAGAACATTACAGAAGATGGTCAGAATAATGCTTCATGCTAAGAACCTCTCACTACAATTTTGGGCTGAAGCTATGCATACAACTTGTCACATTCATAACAGAATTACAGTTCACACTAGCACCACATTAACAATATATGAACTATGGAAAGGTAAAAAAaCCTAATGTAATTTTTTTtCATATATTTGAAAGTGTTTGCTTTATTCTTGCAGATCGAGATTATCATAGAAAATGAGATGTCAAGTCAGATAAAGGAATTTTCTTGGGATATTCTCAAAATAGCCGTGCATACAGAGTCTTCAATATACATACTCAATTTGTTATGGAAACTATCAATGTTGTGATAAATGATGGTGAGAAAATTTCGCTTAGAGGATGTGACGATGAAGATGCAGTATTCATGCAAAATACAAATATTCTTCTGAACCTGTGCAAAGTGTTGACAGTTTGTCTTCAACTAACGAGGATGATAAAAATGATAACAACAACTTTGATCCTCTTCAAAGAACCTTGGAAACTGAGACTGAAACAGAGACTCCCTCTAAACATGTTGCTCCATCATCACATGCCAAAAAGAATCAGTACCCGACAAGTTGTATTATATATCGGTGATCTCAACACTGGAGTCACAACCAAAAAGAAGAACATAATAGATTGTGCAAAGTTAATTGCTAATATCTTTTACACTTCATCTTTTGAACCTATTTTAGTTAGTGAAGCGCTTAAAGATGAGCTCTAGATAAATGCAATGCAAGAAAAGCGTCTGCAGTTTGGAAGAAATAATGTCTAGACCATGGTGCCTAAGCTTGAACCTACCAATGTCATCGGAACAAAATTGGATATTAATAAATAAAACTGATGAGAAGGACTGTGTTACAAGAACGAAGGTAAGATTGGTGGCTCAAGGTTATTCTCAAGTTGAAGTGTGGATTTTGATGAAACTTTTGAACCTGTAGCTAGACTTGAAGTCATATGCTTGTTGCTTATCATAGCGTGTATGCAAAAGATCAAATTATATCAAATGGATGTCAAAAGTGCCTTCTTAAATGGGTACTTAAATGAAGAAGTATATGTTGCACAACCTAAGGGATTCATAGATCCAGTTTTTTCTCAGCACGCGTCCAAATTGAATAAAACTCTTTATGGTCTCAAGCAAAGCACCTAGGGCATGGTATGGATGACTTACTATCTATCTTCGTCAGCAAGGATATGTTGGAGGAGGCACTGATAAAACTCTATTTATTAGTTGGACAAACAAAAACATAATTATGGCTCAACTATATGTTGATGATATCATCTTTGGTGGTTTTCAAGACGATATTGTAAATAGTTTTATTAATATTATGTAATCTGAATTTGAGATGAGCATGGTTTGGGAATTGTCCTTTTTCCTTAGGTTGTAAATCAAGCAAGGCAAAAaTGGTATATTTATCTCTTAAGAAAAATATGCCAAGAATATTGTGAAGAAATTCGGCTTAGAAAAATCTCAGCACAAGAGAACACCAACAACTACATAGATTAAATTGACAAAAGATTATGAAGCTGAAGCTGTGGATCACAAATTATATAGAAGTATGATTGCTAGTTTGTTTTTTAACAGCTACATAGACTTACTTTCTAGTTATATTTAACAGCTAGTAGACAGGATATATCGTATGCTGAAGGAGTTTGTGCTCTCTTTCAGGTTGCTAAAATAATTATCAAATATGTTCATGTAACCTATGACTTTGGTATTTTGTACTCTTTTGTTACAAATTCATTTTTGGTTGGATATTATGATGCAGGTTGGGCTGGATGCTCTGATGATAGGAAAAACACTTTAGAAGGGTGTTTCTTTCTAGGAAACAATTTAATATCTTGGTTCAATAAGAAGCAAAATTCTATTTCTCTATCTAAATCTGAAGTTGAATACATTGTTGTAGGAAGTGCACGTTCTCAACTAATTTGGATGAAACAAATGTTGTGTGAGTATGGTATTTCTCAAGATACCATGATTCTTTACTGTGATAGTATAAGTGTAATTGATATTTCAATGAATCTTGTTCAACACAGTAGAACTAAACAT

mRNA sequence

atggagatgctcaaagaaggcgggtcaactagtaaaccatctatccttgatggaaaaaactactcatattggaaaactcgaatgacagttgttatttctggctggaagctactgatgattactgttgatgataaatatgttcaaaagtctgaagaggaatggacgaatgcagaagaacaagcttctttagaaaatttacgagctcttattgccatatatgatggagtagatctgaatgtgttcaaactgataaaagatgcttggaaagttcttgaagtagcatttgaaggcacatctaaaattattgttgaatataatgtgagagtgctggaaatcacaaatgattccttcaatattggcgagggaattcctaaatcgaaacttgtaagaatggtgttgtggtcattgcctagaaagttcgatatgaaagttacagccattgaagaagcacatgacattaccaccttgacactagatgaattatttaggtctcttcgtacctttgaaatttcctccctttcaatttctcgagctattcagaaggaaaatatacaaaagttgctggatgaaaatcaacaattattaactgttatatcatctttgaaaccaaaattgaaagaagcgaaaatagagtatgaaaaaatgttcaaatcagtaaaaatgttgaattctggcacaaatagtctaaatcagatcctaaatacaggacatgtaacttttgacgatggagcaaaaggaagaattttagccaaagaaaatattgttaatacatatcttgctagacttgatgacgtgagatatgttgaagggctcacaaccaatttaattagcatcagtcaattgtgtgaccaaggttacacaatgaatttctgcaaagaagaatgtattgtgactgataataataatgctgagattataaaagggattcgtcaaattgataactgttatcattggatttctaacaaaaatattttttgcaacttgtctaaggaagaacaaactcagctgtggcataggaaacttggacatgcaagtctcagtacagtaagcaacgatctgaaacacgatgctatcttgagaataccaaatctggatataaatagtcagttattctataaagattgtcaacgtggcaagaaaatcagaacatcacataaaagtattagtgaatgctatactaatagagttcttgaatttcttcatatggatctaatgggtccaatgcaaaccaagagccttgacaggaagaagtatgtatttatttgtgttgatgattattcatggtttacgtgggtaagatttttaagaggtaaagttgagatttctaaagtgtgtataagtttgtgcccgagtctacaacgtgagcagggaaagaatattgtgataatccgtagtgatcatggaagggacattgagaatgaagaatttgataatttatgtgaaaaagaagggattcatcgtgaatactcagctcctttgactcctcaacaaaatggagtcgtagaaagaaaaaacagaacattacagaagatggtcagaataatgcttcatgctaagaacctctcactacaattttgggctgaagctatgcatacaacttgtcacattcataacagaattacagttcacactagcaccacattaacaatatatgaactatggaaagatgtcaagtcagataaaggaattttcttgggatattctcaaaatagccgtgcatacagagtcttcaatatacatactcaatttgttatggaaactatcaatgttgtgataaatgatggtgagaaaatttcgcttagaggatgtgacgatgaagatgcagatgataaaaatgataacaacaactttgatcctcttcaaagaaccttggaaactgagactgaaacagagactccctctaaacatgttgctccatcatcacatgccaaaaagaatcatgtggattttgatgaaacttttgaacctgtagctagacttgaagtcatatgcttgttgcttatcatagcgtgtatgcaaaagatcaaattatatcaaatggatgtcaaaagtgccttcttaaatgggtacttaaatgaagaagtatatgttgcacaacctaagggattcatagatccagttttttctcagcacgcgtccaaattgaataaaactctttatggatatgttggaggaggcactgataaaactctatttaTTAGTTGGACAAACAAAAACATAATTATGGCTCAACTATATGTTGATGATATCATCTTTGGTGGTTTTCAAGACGATATTTTATATTTAACAGCTAGTAGACAGGATATATCGTATGCTGAAGGAGTTTGTGCTCTCTTTCAGGTTGCTAAAATAATTATCAAATATGTTCATGTAACCTATGACTTTGGTATTTTGTACTCTTTTGTTACAAATTCATTtttggttggatattatgatgcaggttgggctggatgctctgatgataggaaaaacactttagaagggtgtttctttctaggaaacaatttaatatcttggttcaataagaagcaaaattctatttctctatctaaatctgaagttgaatacattgttgtaggaagtgcacgttctcaactaatttggatgaaacaaatgttgtgtgagtatggtatttctcaagataccatgattctttactgtgatagtataagtgtaattgatatttcaatgaatcttgttcaacacagtagaactaaacat

Coding sequence (CDS)

ATGGAGATGCTCAAAGAAGGCGGGTCAACTAGTAAACCATCTATCCTTGATGGAAAAAACTACTCATATTGGAAAACTCGAATGACAGTTGTTATTTCTGGCTGGAAGCTACTGATGATTACTGTTGATGATAAATATGTTCAAAAGTCTGAAGAGGAATGGACGAATGCAGAAGAACAAGCTTCTTTAGAAAATTTACGAGCTCTTATTGCCATATATGATGGAGTAGATCTGAATGTGTTCAAACTGATAAAAGATGCTTGGAAAGTTCTTGAAGTAGCATTTGAAGGCACATCTAAAATTATTGTTGAATATAATGTGAGAGTGCTGGAAATCACAAATGATTCCTTCAATATTGGCGAGGGAATTCCTAAATCGAAACTTGTAAGAATGGTGTTGTGGTCATTGCCTAGAAAGTTCGATATGAAAGTTACAGCCATTGAAGAAGCACATGACATTACCACCTTGACACTAGATGAATTATTTAGGTCTCTTCGTACCTTTGAAATTTCCTCCCTTTCAATTTCTCGAGCTATTCAGAAGGAAAATATACAAAAGTTGCTGGATGAAAATCAACAATTATTAACTGTTATATCATCTTTGAAACCAAAATTGAAAGAAGCGAAAATAGAGTATGAAAAAATGTTCAAATCAGTAAAAATGTTGAATTCTGGCACAAATAGTCTAAATCAGATCCTAAATACAGGACATGTAACTTTTGACGATGGAGCAAAAGGAAGAATTTTAGCCAAAGAAAaTATTGTTAATACATATCTTGCTAGACTTGATGACGTGAGATATGTTGAAGGGCTCACAACCAATTTAATTAGCATCAGTCAATTGTGTGACCAAGGTTACACAATGAATTTCTGCAAAGAAGAATGTATTGTGACTGATAATAATAATGCTGAGATTATAAAAGGGATTCGTCAAATTGATAACTGTTATCATTGGATTTCTAACAAAAATATTTTTTGCAACTTGTCTAAGGAAGAACAAACTCAGCTGTGGCATAGGAAACTTGGACATGCAAGTCTCAGTACAGTAAGCAACGATCTGAAACACGATGCTATCTTGAGAATACCAAATCTGGATATAAATAGTCAGTTATTCTATAAAGATTGTCAACGTGGCAAGAAAATCAGAACATCACATAAAAGTATTAGTGAATGCTATACTAATAGAGTTCTTGAATTTCTTCATATGGATCTAATGGGTCCAATGCAAACCAAGAGCCTTGACAGGAAGAAGTATGTATTTATTTGTGTTGATGATTATTCATGGTTTACGTGGGTAAGATTTTTAAGAGGTAAAGTTGAGATTTCTAAAGTGTGTATAAGTTTGTGCCCGAGTCTACAACGTGAGCAGGGAAAGAATATTGTGATAATCCGTAGTGATCATGGAAGGGACATTGAGAATGAAGAATTTGATAATTTATGTGAAAAAGAAGGGATTCATCGTGAATACTCAGCTCCTTTGACTCCTCAACAAAATGGAGTCGTAGAAAGAAAAAaCAGAACATTACAGAAGATGGTCAGAATAATGCTTCATGCTAAGAACCTCTCACTACAATTTTGGGCTGAAGCTATGCATACAACTTGTCACATTCATAACAGAATTACAGTTCACACTAGCACCACATTAACAATATATGAACTATGGAAAGATGTCAAGTCAGATAAAGGAATTTTCTTGGGATATTCTCAAAATAGCCGTGCATACAGAGTCTTCAATATACATACTCAATTTGTTATGGAAACTATCAATGTTGTGATAAATGATGGTGAGAAAATTTCGCTTAGAGGATGTGACGATGAAGATGCAGATGATAAAAATGATAACAACAACTTTGATCCTCTTCAAAGAACCTTGGAAACTGAGACTGAAACAGAGACTCCCTCTAAACATGTTGCTCCATCATCACATGCCAAAAAGAATCATGTGGATTTTGATGAAACTTTTGAACCTGTAGCTAGACTTGAAGTCATATGCTTGTTGCTTATCATAGCGTGTATGCAAAAGATCAAATTATATCAAATGGATGTCAAAAGTGCCTTCTTAAATGGGTACTTAAATGAAGAAGTATATGTTGCACAACCTAAGGGATTCATAGATCCAGTTTTTTCTCAGCACGCGTCCAAATTGAATAAAACTCTTTATGGATATGTTGGAGGAGGCACTGATAAAACTCTATTTATTAGTTGGACAAACAAAAACATAATTATGGCTCAACTATATGTTGATGATATCATCTTTGGTGGTTTTCAAGACGATATTTTATATTTAACAGCTAGTAGACAGGATATATCGTATGCTGAAGGAGTTTGTGCTCTCTTTCAGGTTGCTAAAATAATTATCAAATATGTTCATGTAACCTATGACTTTGGTATTTTGTACTCTTTTGTTACAAATTCATTTTTGGTTGGATATTATGATGCAGGTTGGGCTGGATGCTCTGATGATAGGAAAAACACTTTAGAAGGGTGTTTCTTTCTAGGAAACAATTTAATATCTTGGTTCAATAAGAAGCAAAATTCTATTTCTCTATCTAAATCTGAAGTTGAATACATTGTTGTAGGAAGTGCACGTTCTCAACTAATTTGGATGAAACAAATGTTGTGTGAGTATGGTATTTCTCAAGATACCATGATTCTTTACTGTGATAGTATAAGTGTAATTGATATTTCAATGAATCTTGTTCAACACAGTAGAACTAAACAT

Protein sequence

MEMLKEGGSTSKPSILDGKNYSYWKTRMTVVISGWKLLMITVDDKYVQKSEEEWTNAEEQASLENLRALIAIYDGVDLNVFKLIKDAWKVLEVAFEGTSKIIVEYNVRVLEITNDSFNIGEGIPKSKLVRMVLWSLPRKFDMKVTAIEEAHDITTLTLDELFRSLRTFEISSLSISRAIQKENIQKLLDENQQLLTVISSLKPKLKEAKIEYEKMFKSVKMLNSGTNSLNQILNTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKEECIVTDNNNAEIIKGIRQIDNCYHWISNKNIFCNLSKEEQTQLWHRKLGHASLSTVSNDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQTKSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRDIENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAMHTTCHIHNRITVHTSTTLTIYELWKDVKSDKGIFLGYSQNSRAYRVFNIHTQFVMETINVVINDGEKISLRGCDDEDADDKNDNNNFDPLQRTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMDVKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLYGYVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDILYLTASRQDISYAEGVCALFQVAKIIIKYVHVTYDFGILYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYIVVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH

Homology

[Close]

BLAST of Cucsa.261680 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.3e-31
Identity = 98/298 (32.89%), Postives = 148/298 (49.66%), Query Frame = 1


Query: 246 GRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKEECIVTDNNNAEI 305
           G I  K N+  T +  L DVR+V  L  NLIS   L   GY   F  ++  +T   +  I
Sbjct: 336 GDICIKTNVGCTLV--LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLT-KGSLVI 395

Query: 306 IKGIRQIDNCYHWISNKNIF---CNLSKEE-QTQLWHRKLGHASLSTVSNDLKHDAILRI 365
            KG+ +    Y   +N  I     N +++E    LWH+++GH S   +    K   I   
Sbjct: 396 AKGVAR-GTLYR--TNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYA 455

Query: 366 PNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQTKSLDRKKYVFI 425
               +    +   C  GK+ R S ++ SE   N +L+ ++ D+ GPM+ +S+   KY   
Sbjct: 456 KGTTVKPCDY---CLFGKQHRVSFQTSSERKLN-ILDLVYSDVCGPMEIESMGGNKYFVT 515

Query: 426 CVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRDIENEEFDNLCE 485
            +DD S   WV  L+ K ++ +V       ++RE G+ +  +RSD+G +  + EF+  C 
Sbjct: 516 FIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCS 575

Query: 486 KEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAMHTTCHIHNR 540
             GI  E + P TPQ NGV ER NRT+ + VR ML    L   FW EA+ T C++ NR
Sbjct: 576 SHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINR 623

HSP 2 Score: 95.5 bits (236), Expect = 3.2e-18
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = 1


Query: 762  LTASRQDISYAEGVCALF---------QVAKIIIKYVHVTYDFGILYSFVTNSFLVGYYD 821
            +  +R DI++A GV + F         +  K I++Y+  T    + +   ++  L GY D
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTD 1181

Query: 822  AGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYIVVGSARSQLIWMKQM 881
            A  AG  D+RK++    F      ISW +K Q  ++LS +E EYI       ++IW+K+ 
Sbjct: 1182 ADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRF 1241

Query: 882  LCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
            L E G+ Q   ++YCDS S ID+S N + H+RTKH
Sbjct: 1242 LQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKH 1275

HSP 3 Score: 72.8 bits (177), Expect = 2.2e-11
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 1


Query: 644  KKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMDVKSAFLNGYLNEEVYVAQPKGF 703
            +K  +DFDE F PV ++  I  +L +A    +++ Q+DVK+AFL+G L EE+Y+ QP+GF
Sbjct: 885  QKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 944

Query: 704  IDPVFSQHASKLNKTLYG--------------------YVGGGTDKTLFIS-WTNKNIIM 755
                      KLNK+LYG                    Y+   +D  ++   ++  N I+
Sbjct: 945  EVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFII 1004

[Close]

BLAST of Cucsa.261680 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-26
Identity = 99/416 (23.80%), Postives = 186/416 (44.71%), Query Frame = 1


Query: 256 NTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKEECIVTDNNNAEIIKGIRQIDNC 315
           N +   L+DV + +    NL+S+ +L + G ++ F K    ++  N   ++K    ++N 
Sbjct: 339 NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTIS-KNGLMVVKNSGMLNNV 398

Query: 316 YHWISNKNIFCNLSKEEQTQLWHRKLGHAS----LSTVSNDLKHDAILRIPNLDINSQLF 375
              I+ +    N   +   +LWH + GH S    L     ++  D  L + NL+++ ++ 
Sbjct: 399 -PVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSL-LNNLELSCEIC 458

Query: 376 YKDCQRGKKIRTSHKSISE-CYTNRVLEFLHMDLMGPMQTKSLDRKKYVFICVDDYSWFT 435
            + C  GK+ R   K + +  +  R L  +H D+ GP+   +LD K Y  I VD ++ + 
Sbjct: 459 -EPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYC 518

Query: 436 WVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRDIENEEFDNLCEKEGIHREYS 495
               ++ K ++  +        +      +V +  D+GR+  + E    C K+GI    +
Sbjct: 519 VTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLT 578

Query: 496 APLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAMHTTCHIHNRITVH--TSTTL 555
            P TPQ NGV ER  RT+ +  R M+    L   FW EA+ T  ++ NRI       ++ 
Sbjct: 579 VPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSK 638

Query: 556 TIYELWKDV---------------------------KSDKGIFLGYSQNSRAYRVFNIHT 615
           T YE+W +                            KS K IF+GY  N   +++++   
Sbjct: 639 TPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVN 698

Query: 616 QFVMETINVVINDGEKISLRGCDDEDA----DDKNDNNNF-DPLQRTLETETETET 633
           +  +   +VV+++   ++ R    E        +++N NF +  ++ ++TE   E+
Sbjct: 699 EKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNES 748

HSP 2 Score: 74.3 bits (181), Expect = 7.5e-12
Identity = 45/131 (34.35%), Postives = 69/131 (52.67%), Query Frame = 1


Query: 644  KKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMDVKSAFLNGYLNEEVYVAQPKGF 703
            +K  +D++ETF PVAR+     +L +     +K++QMDVK+AFLNG L EE+Y+  P+G 
Sbjct: 965  QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI 1024

Query: 704  IDPVFSQHASKLNKTLYG--------------------YVGGGTDKTLFI---SWTNKNI 752
                 S +  KLNK +YG                    +V    D+ ++I      N+NI
Sbjct: 1025 --SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1084

[Close]

BLAST of Cucsa.261680 vs. Swiss-Prot
Match: YL22B_YEAST (Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR2 PE=5 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-16
Identity = 74/298 (24.83%), Postives = 121/298 (40.60%), Query Frame = 1


Query: 267 YVEGLTTNLISISQLCDQGYTMNFCKEECIVTDNNN-AEIIKGIRQIDNCYHWISNKNIF 326
           +   +  +L+S+S+L +Q  T  F +     +D    A I+K        ++W+S K + 
Sbjct: 514 HTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVK-----HGDFYWLSKKYLI 573

Query: 327 C---------NLSKEEQTQ-----LWHRKLGHASLSTVSNDLKHDAILRIPNLDIN---- 386
                     N++K +        L HR LGHA+  ++   LK +A+  +   DI     
Sbjct: 574 PSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNA 633

Query: 387 SQLFYKDCQRGKKIRTSHKSISECYTNRVLE---FLHMDLMGPMQTKSLDRKKYVFICVD 446
           S     DC  GK  +  H   S        E   +LH D+ GP+         Y     D
Sbjct: 634 STYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTD 693

Query: 447 DYSWFTWVRFLRGKVE--ISKVCISLCPSLQREQGKNIVIIRSDHGRDIENEEFDNLCEK 506
           + + F WV  L  + E  I  V  S+   ++ +    +++I+ D G +  N+        
Sbjct: 694 EKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTN 753

Query: 507 EGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAMHTTCHIHNRI 541
            GI   Y+     + +GV ER NRTL    R +LH   L    W  A+  +  I N +
Sbjct: 754 RGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL 806

HSP 2 Score: 30.0 bits (66), Expect = 1.6e+02
Identity = 20/64 (31.25%), Postives = 31/64 (48.44%), Query Frame = 1


Query: 667  LIIACMQKIKLYQMDVKSAFLNGYLNEEVYVAQPK--GFIDPVFSQHASKLNKTLYGYVG 726
            L IA      + Q+D+ SA+L   + EE+Y+  P   G  D +      +L K+LYG   
Sbjct: 1347 LSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDKLL-----RLRKSLYGLKQ 1405

Query: 727  GGTD 729
             G +
Sbjct: 1407 SGAN 1405

[Close]

BLAST of Cucsa.261680 vs. Swiss-Prot
Match: YG21B_YEAST (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-16
Identity = 74/298 (24.83%), Postives = 121/298 (40.60%), Query Frame = 1


Query: 267 YVEGLTTNLISISQLCDQGYTMNFCKEECIVTDNNN-AEIIKGIRQIDNCYHWISNKNIF 326
           +   +  +L+S+S+L +Q  T  F +     +D    A I+K        ++W+S K + 
Sbjct: 514 HTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVK-----HGDFYWLSKKYLI 573

Query: 327 C---------NLSKEEQTQ-----LWHRKLGHASLSTVSNDLKHDAILRIPNLDIN---- 386
                     N++K +        L HR LGHA+  ++   LK +A+  +   DI     
Sbjct: 574 PSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNA 633

Query: 387 SQLFYKDCQRGKKIRTSHKSISECYTNRVLE---FLHMDLMGPMQTKSLDRKKYVFICVD 446
           S     DC  GK  +  H   S        E   +LH D+ GP+         Y     D
Sbjct: 634 STYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTD 693

Query: 447 DYSWFTWVRFLRGKVE--ISKVCISLCPSLQREQGKNIVIIRSDHGRDIENEEFDNLCEK 506
           + + F WV  L  + E  I  V  S+   ++ +    +++I+ D G +  N+        
Sbjct: 694 EKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTN 753

Query: 507 EGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAMHTTCHIHNRI 541
            GI   Y+     + +GV ER NRTL    R +LH   L    W  A+  +  I N +
Sbjct: 754 RGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL 806

HSP 2 Score: 30.0 bits (66), Expect = 1.6e+02
Identity = 20/64 (31.25%), Postives = 31/64 (48.44%), Query Frame = 1


Query: 667  LIIACMQKIKLYQMDVKSAFLNGYLNEEVYVAQPK--GFIDPVFSQHASKLNKTLYGYVG 726
            L IA      + Q+D+ SA+L   + EE+Y+  P   G  D +      +L K+LYG   
Sbjct: 1347 LSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDKLL-----RLRKSLYGLKQ 1405

Query: 727  GGTD 729
             G +
Sbjct: 1407 SGAN 1405

[Close]

BLAST of Cucsa.261680 vs. Swiss-Prot
Match: YF21B_YEAST (Transposon Ty2-F Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-F PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-16
Identity = 74/298 (24.83%), Postives = 121/298 (40.60%), Query Frame = 1


Query: 267 YVEGLTTNLISISQLCDQGYTMNFCKEECIVTDNNN-AEIIKGIRQIDNCYHWISNKNIF 326
           +   +  +L+S+S+L +Q  T  F +     +D    A I+K        ++W+S K + 
Sbjct: 514 HTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVK-----HGDFYWLSKKYLI 573

Query: 327 C---------NLSKEEQTQ-----LWHRKLGHASLSTVSNDLKHDAILRIPNLDIN---- 386
                     N++K +        L HR LGHA+  ++   LK +A+  +   DI     
Sbjct: 574 PSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNA 633

Query: 387 SQLFYKDCQRGKKIRTSHKSISECYTNRVLE---FLHMDLMGPMQTKSLDRKKYVFICVD 446
           S     DC  GK  +  H   S        E   +LH D+ GP+         Y     D
Sbjct: 634 STYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTD 693

Query: 447 DYSWFTWVRFLRGKVE--ISKVCISLCPSLQREQGKNIVIIRSDHGRDIENEEFDNLCEK 506
           + + F WV  L  + E  I  V  S+   ++ +    +++I+ D G +  N+        
Sbjct: 694 EKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTN 753

Query: 507 EGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAMHTTCHIHNRI 541
            GI   Y+     + +GV ER NRTL    R +LH   L    W  A+  +  I N +
Sbjct: 754 RGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL 806

HSP 2 Score: 30.0 bits (66), Expect = 1.6e+02
Identity = 20/64 (31.25%), Postives = 31/64 (48.44%), Query Frame = 1


Query: 667  LIIACMQKIKLYQMDVKSAFLNGYLNEEVYVAQPK--GFIDPVFSQHASKLNKTLYGYVG 726
            L IA      + Q+D+ SA+L   + EE+Y+  P   G  D +      +L K+LYG   
Sbjct: 1347 LSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDKLL-----RLRKSLYGLKQ 1405

Query: 727  GGTD 729
             G +
Sbjct: 1407 SGAN 1405

[Close]

BLAST of Cucsa.261680 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 2.2e-98
Identity = 188/392 (47.96%), Postives = 247/392 (63.01%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I+    +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 586 STSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 645

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 646 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMK 705

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 706 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQV 765

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV F+R K E  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 766 ESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGRE 825

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN  F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 826 FENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 885

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 886 NTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAG 945

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVIND 595
           IFLGYS NSRAYRVFN  T+ VME+INVV++D
Sbjct: 946 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 977

[Close]

BLAST of Cucsa.261680 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD  ++      +LYLTASR DI+YA GVCA +Q           K I+KYV+ T D+GI
Sbjct: 1351 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGI 1410

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   +N  LVGY DA WAG +DDRK+T  GCF+LGNNLISWF+KKQN +SLS +E EYI
Sbjct: 1411 MYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1470

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1471 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH 1520

HSP 2 Score: 151.8 bits (382), Expect = 4.1e-33
Identity = 89/213 (41.78%), Postives = 122/213 (57.28%), Query Frame = 1


Query: 1   MEMLKEGGSTSKPSILDGKNYSYWKTRMTV------------VISGWKL-LMITVDDKYV 60
           M M KEGG  ++P ILDG NY YWK RM              VI GW+   M+  + K  
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KSEEEWTNAEEQASLENLRALIAIYDGVDLNVFKLI------KDAWKVLEVAFEGTS 120
              K EE+WT  E++ +L N +AL A+++GVD N+F+LI      KDAW++L++  EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KI----------------------IVEYNVRVLEITNDSFNIGEGIPKSKLVRMVLWSLP 171
           K+                      I ++++ +LEI N    +GE I   KLVR +L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

HSP 3 Score: 144.4 bits (363), Expect = 6.6e-31
Identity = 80/159 (50.31%), Postives = 98/159 (61.64%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF PVARLE I LLL +AC+ K KLYQMD
Sbjct: 1118 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMD 1177

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEEVYV QPKGF DP    H  +L K LY                    G
Sbjct: 1178 VKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1237

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1238 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1275

HSP 4 Score: 40.8 bits (94), Expect = 1.0e+01
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 145 TAIEEAHDITTLTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLK 204
           TA + +   + +T DEL  S R   I S  I    A  K+ I  L  E +     IS LK
Sbjct: 354 TAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEISELK 413

Query: 205 PKLKEAKIEYEKMFKSVKMLNSGTNSLNQILNTG 237
            ++     + E M KS+KMLN G+++L+++L  G
Sbjct: 414 GEVGFLNSKLETMKKSIKMLNKGSDTLDEVLLLG 447

HSP 5 Score: 367.9 bits (943), Expect = 3.7e-98
Identity = 188/392 (47.96%), Postives = 248/392 (63.27%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I     +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 587 STSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKS 646

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWI---SNKNIFCNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W    S+ +  C  SKE++ ++WH++ GH  L  + 
Sbjct: 647 ECLVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMK 706

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 707 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 766

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV F+R K +  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 767 ESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGRE 826

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN +F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 827 FENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 886

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 887 NTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAG 946

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVIND 595
           IFLGYS NSRAYRVFN  T+ VME+INVV++D
Sbjct: 947 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 978

[Close]

BLAST of Cucsa.261680 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD  ++      +LYLTASR DI+YA GVCA +Q           K I+KYV+ T D+GI
Sbjct: 1352 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGI 1411

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   + S LVGY DA WAG +DDRK+T  GCF+LGNNLISWF+KKQN +SLS +E EYI
Sbjct: 1412 MYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1471

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1472 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH 1521

HSP 2 Score: 148.7 bits (374), Expect = 3.5e-32
Identity = 88/213 (41.31%), Postives = 121/213 (56.81%), Query Frame = 1


Query: 1   MEMLKEGGSTSKPSILDGKNYSYWKTRMTV------------VISGWKL-LMITVDDKYV 60
           M M KEGG  ++P ILDG NY YWK RM              VI GW+   M+  + K  
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KSEEEWTNAEEQASLENLRALIAIYDGVDLNVFKLI------KDAWKVLEVAFEGTS 120
              K EE+WT  E++ +L N +AL A+++GVD N+F+LI      KDAW++L+   EGTS
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KI----------------------IVEYNVRVLEITNDSFNIGEGIPKSKLVRMVLWSLP 171
           K+                      I ++++ +LEI N    +GE +   KLVR +L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLP 180

HSP 3 Score: 144.4 bits (363), Expect = 6.6e-31
Identity = 79/159 (49.69%), Postives = 98/159 (61.64%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF PVARLE I LLL +AC+ K KLYQMD
Sbjct: 1119 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMD 1178

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEE YV QPKGF+DP    H  +L K LY                    G
Sbjct: 1179 VKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1238

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1239 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1276

HSP 4 Score: 38.5 bits (88), Expect = 5.1e+01
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 1


Query: 156 LTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLKPKLKEAKIEYE 215
           +T DEL    R   I S  I    A  K+ I  L  E +     IS LK ++     + E
Sbjct: 366 ITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISKLKGEVGFLNSKLE 425

Query: 216 KMFKSVKMLNSGTNSLNQILNTG 237
            M KS+KMLN G++ L+++L  G
Sbjct: 426 NMTKSIKMLNKGSDMLDZVLQLG 448

HSP 5 Score: 367.9 bits (943), Expect = 3.7e-98
Identity = 187/392 (47.70%), Postives = 248/392 (63.27%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I     +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 560 STSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 619

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 620 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMK 679

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ S++ +    T+RVLE LHMDLMGPMQ 
Sbjct: 680 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQV 739

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL RK+Y ++ VDD+S FTWV F+R K +  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 740 ESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGRE 799

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN +F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 800 FENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 859

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 860 NTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHICGSPCYILADREQRRKMDPKSDAG 919

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVIND 595
           IFLGYS NSRAYRVFN  T+ VME+INVV++D
Sbjct: 920 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 951

[Close]

BLAST of Cucsa.261680 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 9.5e-46
Identity = 96/170 (56.47%), Postives = 118/170 (69.41%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD  ++      +LYLTASR DI+YA G CA +Q           K I+KYV+ T D+GI
Sbjct: 1325 VDQSLYRSMIGSLLYLTASRPDITYAVGGCARYQANPKISHLNQVKRILKYVNGTSDYGI 1384

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   ++S LVGY DA WAG  DDRK+T  GCF+LG N ISWF+KKQN +SLS +E EYI
Sbjct: 1385 MYCHCSDSMLVGYCDADWAGSVDDRKSTFGGCFYLGTNFISWFSKKQNCVSLSTAEAEYI 1444

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1445 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNLSAINISKNPVQHSRTKH 1494

HSP 2 Score: 141.7 bits (356), Expect = 4.3e-30
Identity = 78/159 (49.06%), Postives = 97/159 (61.01%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF P ARLE I LLL +AC+ K KLYQMD
Sbjct: 1092 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPGARLESIRLLLGVACILKFKLYQMD 1151

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEE YV QPKGF+DP    H  +L K LY                    G
Sbjct: 1152 VKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1211

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1212 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1249

HSP 3 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 73/178 (41.01%), Postives = 103/178 (57.87%), Query Frame = 1


Query: 24  WKTRMTVVISGWKL-LMITVDDKYVQ--KSEEEWTNAEEQASLENLRALIAIYDGVDLNV 83
           WK     VI GW+   M+  + K     K EE+WT  E++ +L N +AL A+++GVD N+
Sbjct: 13  WKA----VIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNI 72

Query: 84  FKLI------KDAWKVLEVAFEGTSKI----------------------IVEYNVRVLEI 143
           F+LI      KDAW++L+   EGTSK+                      I E+++ +LEI
Sbjct: 73  FRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFHMNILEI 132

Query: 144 TNDSFNIGEGIPKSKLVRMVLWSLPRKFDMKVTAIEEAHDITTLTLDELFRSLRTFEI 171
            N    +GE +   KLVR +L SLP++FDMKVTAIEEA DI  + +DEL  SL+TFE+
Sbjct: 133 ANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFEL 186

HSP 4 Score: 40.0 bits (92), Expect = 1.8e+01
Identity = 30/83 (36.14%), Postives = 42/83 (50.60%), Query Frame = 1


Query: 156 LTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLKPKLKEAKIEYE 215
           +T DEL  S R   I S  I    A  K+ I  L  E +     IS LK ++     + E
Sbjct: 339 ITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLE 398

Query: 216 KMFKSVKMLNSGTNSLNQILNTG 237
            M KS+KMLN G++ L+++L  G
Sbjct: 399 NMTKSIKMLNKGSDLLDEVLQLG 421

HSP 5 Score: 367.9 bits (943), Expect = 3.7e-98
Identity = 191/412 (46.36%), Postives = 253/412 (61.41%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I+    +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 584 STSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 643

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 644 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMK 703

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 704 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 763

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV+F+R K E  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 764 ESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGRE 823

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN      C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 824 FENSRLTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 883

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 884 NTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAG 943

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVINDGEKISLRGCDDEDADDKNDN 615
           IFLGYS NSRAYRVFN  T+ VME+INVV++D      +   +ED     DN
Sbjct: 944 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDV-EEDVRTSGDN 994

[Close]

BLAST of Cucsa.261680 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD  ++      +LYLTASR DI+YA GVCA +Q           K I+KYV+ T D+GI
Sbjct: 1349 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGI 1408

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   +N  LVGY DA WAG +DDRK+T  GCF+LGNNLISWF+KKQN +SLS +E EYI
Sbjct: 1409 MYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1468

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1469 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH 1518

HSP 2 Score: 151.8 bits (382), Expect = 4.1e-33
Identity = 89/213 (41.78%), Postives = 122/213 (57.28%), Query Frame = 1


Query: 1   MEMLKEGGSTSKPSILDGKNYSYWKTRMTV------------VISGWKL-LMITVDDKYV 60
           M M KEGG  ++P ILDG NY YWK RM              VI GW+   M+  + K  
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KSEEEWTNAEEQASLENLRALIAIYDGVDLNVFKLI------KDAWKVLEVAFEGTS 120
              K EE+WT  E++ +L N +AL A+++GVD N+F+LI      KDAW++L++  EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KI----------------------IVEYNVRVLEITNDSFNIGEGIPKSKLVRMVLWSLP 171
           K+                      I ++++ +LEI N    +GE I   KLVR +L SLP
Sbjct: 121 KVKISRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

HSP 3 Score: 144.4 bits (363), Expect = 6.6e-31
Identity = 80/159 (50.31%), Postives = 98/159 (61.64%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF PVARLE I LLL +AC+ K KLYQMD
Sbjct: 1116 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMD 1175

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEEVYV QPKGF DP    H  +L K LY                    G
Sbjct: 1176 VKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1235

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1236 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1273

HSP 4 Score: 42.0 bits (97), Expect = 4.6e+00
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 145 TAIEEAHDITTLTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLK 204
           TA + +   + +T DEL  S R   I S  I    A  K+ I  L  E +     IS LK
Sbjct: 354 TAEDSSDTDSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELK 413

Query: 205 PKLKEAKIEYEKMFKSVKMLNSGTNSLNQILNTG 237
            ++     + E M KS+KMLN G+++L+++L  G
Sbjct: 414 GEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLG 447

HSP 5 Score: 367.9 bits (943), Expect = 3.7e-98
Identity = 192/412 (46.60%), Postives = 252/412 (61.17%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I+    +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 586 STSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 645

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 646 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMK 705

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             L   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 706 KILDKSAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 765

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV F+R K    +V   L   LQRE+   I  IRSDHGR+
Sbjct: 766 ESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGRE 825

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN  F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 826 FENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 885

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 886 NTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAG 945

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVINDGEKISLRGCDDEDADDKNDN 615
           IFLGYS NSRAYRVFN  T+ VME+INVV++D      +   +ED     DN
Sbjct: 946 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDV-EEDVRTSGDN 996

[Close]

BLAST of Cucsa.261680 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 94.0 bits (232), Expect = 5.2e-19
Identity = 54/159 (33.96%), Postives = 81/159 (50.94%), Query Frame = 1


Query: 759 ILYLTASRQDISYAEGVCALF---------QVAKIIIKYVHVTYDFGILYSFVTNSFLVG 818
           ++YL  +R DIS+A    + F         Q    I+ Y+  T   G+ YS      L  
Sbjct: 385 LMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 444

Query: 819 YYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYIVVGSARSQLIWM 878
           + DA +  C D R++T   C FLG +LISW +KKQ  +S S +E EY  +  A  +++W+
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

Query: 879 KQMLCEYGIS-QDTMILYCDSISVIDISMNLVQHSRTKH 908
            Q   E  +      +L+CD+ + I I+ N V H RTKH
Sbjct: 505 AQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKH 543

HSP 2 Score: 67.4 bits (163), Expect = 5.2e-11
Identity = 41/134 (30.60%), Postives = 66/134 (49.25%), Query Frame = 1


Query: 642 HAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMDVKSAFLNGYLNEEVYVAQPK 701
           + ++  +DF ETF PV +L  + L+L I+ +    L+Q+D+ +AFLNG L+EE+Y+  P 
Sbjct: 155 YTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPP 214

Query: 702 GFI----DPVFSQHASKLNKTLY--------------------GYVGGGTDKTLFISWTN 752
           G+     D +       L K++Y                    G+V   +D T F+  T 
Sbjct: 215 GYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITA 274

[Close]

BLAST of Cucsa.261680 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-13
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1


Query: 746 YVDDIIFGGFQDDILYLTASRQDISYA---------EGVCALFQVAKIIIKYVHVTYDFG 805
           Y D   F      + YLT +R DISYA         E   A F + K +++YV  T   G
Sbjct: 94  YPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG 153

Query: 806 ILYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEY 865
           +     +   +  + D+ WAGC+  R++T   C FLG N+ISW  K+Q ++S S +E EY
Sbjct: 154 LYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEY 213

Query: 866 IVVGSARSQLIW 869
             +    ++L W
Sbjct: 214 RALALTAAELTW 225

[Close]

BLAST of Cucsa.261680 vs. NCBI nr
Match: gi|29423279|gb|AAO73527.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 368.6 bits (945), Expect = 3.1e-98
Identity = 188/392 (47.96%), Postives = 247/392 (63.01%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I+    +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 586 STSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 645

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 646 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMK 705

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 706 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQV 765

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV F+R K E  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 766 ESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGRE 825

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN  F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 826 FENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 885

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 886 NTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAG 945

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVIND 595
           IFLGYS NSRAYRVFN  T+ VME+INVV++D
Sbjct: 946 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 977

[Close]

BLAST of Cucsa.261680 vs. NCBI nr
Match: gi|29423279|gb|AAO73527.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-47
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD  ++      +LYLTASR DI+YA GVCA +Q           K I+KYV+ T D+GI
Sbjct: 1351 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGI 1410

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   +N  LVGY DA WAG +DDRK+T  GCF+LGNNLISWF+KKQN +SLS +E EYI
Sbjct: 1411 MYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1470

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1471 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH 1520

HSP 2 Score: 151.8 bits (382), Expect = 5.9e-33
Identity = 89/213 (41.78%), Postives = 122/213 (57.28%), Query Frame = 1


Query: 1   MEMLKEGGSTSKPSILDGKNYSYWKTRMTV------------VISGWKL-LMITVDDKYV 60
           M M KEGG  ++P ILDG NY YWK RM              VI GW+   M+  + K  
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KSEEEWTNAEEQASLENLRALIAIYDGVDLNVFKLI------KDAWKVLEVAFEGTS 120
              K EE+WT  E++ +L N +AL A+++GVD N+F+LI      KDAW++L++  EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KI----------------------IVEYNVRVLEITNDSFNIGEGIPKSKLVRMVLWSLP 171
           K+                      I ++++ +LEI N    +GE I   KLVR +L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

HSP 3 Score: 144.4 bits (363), Expect = 9.5e-31
Identity = 80/159 (50.31%), Postives = 98/159 (61.64%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF PVARLE I LLL +AC+ K KLYQMD
Sbjct: 1118 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMD 1177

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEEVYV QPKGF DP    H  +L K LY                    G
Sbjct: 1178 VKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1237

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1238 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1275

HSP 4 Score: 40.8 bits (94), Expect = 1.5e+01
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 145 TAIEEAHDITTLTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLK 204
           TA + +   + +T DEL  S R   I S  I    A  K+ I  L  E +     IS LK
Sbjct: 354 TAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEISELK 413

Query: 205 PKLKEAKIEYEKMFKSVKMLNSGTNSLNQILNTG 237
            ++     + E M KS+KMLN G+++L+++L  G
Sbjct: 414 GEVGFLNSKLETMKKSIKMLNKGSDTLDEVLLLG 447

HSP 5 Score: 367.9 bits (943), Expect = 5.3e-98
Identity = 187/392 (47.70%), Postives = 248/392 (63.27%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I     +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 560 STSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 619

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 620 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMK 679

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ S++ +    T+RVLE LHMDLMGPMQ 
Sbjct: 680 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQV 739

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL RK+Y ++ VDD+S FTWV F+R K +  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 740 ESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGRE 799

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN +F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 800 FENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 859

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 860 NTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHICGSPCYILADREQRRKMDPKSDAG 919

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVIND 595
           IFLGYS NSRAYRVFN  T+ VME+INVV++D
Sbjct: 920 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 951

[Close]

BLAST of Cucsa.261680 vs. NCBI nr
Match: gi|3777527|gb|AAC64917.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-45
Identity = 96/170 (56.47%), Postives = 118/170 (69.41%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD  ++      +LYLTASR DI+YA G CA +Q           K I+KYV+ T D+GI
Sbjct: 1325 VDQSLYRSMIGSLLYLTASRPDITYAVGGCARYQANPKISHLNQVKRILKYVNGTSDYGI 1384

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   ++S LVGY DA WAG  DDRK+T  GCF+LG N ISWF+KKQN +SLS +E EYI
Sbjct: 1385 MYCHCSDSMLVGYCDADWAGSVDDRKSTFGGCFYLGTNFISWFSKKQNCVSLSTAEAEYI 1444

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1445 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNLSAINISKNPVQHSRTKH 1494

HSP 2 Score: 141.7 bits (356), Expect = 6.1e-30
Identity = 78/159 (49.06%), Postives = 97/159 (61.01%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF P ARLE I LLL +AC+ K KLYQMD
Sbjct: 1092 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPGARLESIRLLLGVACILKFKLYQMD 1151

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEE YV QPKGF+DP    H  +L K LY                    G
Sbjct: 1152 VKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1211

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1212 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1249

HSP 3 Score: 120.2 bits (300), Expect = 1.9e-23
Identity = 73/178 (41.01%), Postives = 103/178 (57.87%), Query Frame = 1


Query: 24  WKTRMTVVISGWKL-LMITVDDKYVQ--KSEEEWTNAEEQASLENLRALIAIYDGVDLNV 83
           WK     VI GW+   M+  + K     K EE+WT  E++ +L N +AL A+++GVD N+
Sbjct: 13  WKA----VIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNI 72

Query: 84  FKLI------KDAWKVLEVAFEGTSKI----------------------IVEYNVRVLEI 143
           F+LI      KDAW++L+   EGTSK+                      I E+++ +LEI
Sbjct: 73  FRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFHMNILEI 132

Query: 144 TNDSFNIGEGIPKSKLVRMVLWSLPRKFDMKVTAIEEAHDITTLTLDELFRSLRTFEI 171
            N    +GE +   KLVR +L SLP++FDMKVTAIEEA DI  + +DEL  SL+TFE+
Sbjct: 133 ANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFEL 186

HSP 4 Score: 40.0 bits (92), Expect = 2.5e+01
Identity = 30/83 (36.14%), Postives = 42/83 (50.60%), Query Frame = 1


Query: 156 LTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLKPKLKEAKIEYE 215
           +T DEL  S R   I S  I    A  K+ I  L  E +     IS LK ++     + E
Sbjct: 339 ITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLE 398

Query: 216 KMFKSVKMLNSGTNSLNQILNTG 237
            M KS+KMLN G++ L+++L  G
Sbjct: 399 NMTKSIKMLNKGSDLLDEVLQLG 421

HSP 5 Score: 367.9 bits (943), Expect = 5.3e-98
Identity = 188/392 (47.96%), Postives = 248/392 (63.27%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I     +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 587 STSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKS 646

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWI---SNKNIFCNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W    S+ +  C  SKE++ ++WH++ GH  L  + 
Sbjct: 647 ECLVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMK 706

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 707 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 766

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV F+R K +  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 767 ESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGRE 826

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN +F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 827 FENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 886

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 887 NTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAG 946

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVIND 595
           IFLGYS NSRAYRVFN  T+ VME+INVV++D
Sbjct: 947 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 978

[Close]

BLAST of Cucsa.261680 vs. NCBI nr
Match: gi|29423282|gb|AAO73529.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-47
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD  ++      +LYLTASR DI+YA GVCA +Q           K I+KYV+ T D+GI
Sbjct: 1352 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGI 1411

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   + S LVGY DA WAG +DDRK+T  GCF+LGNNLISWF+KKQN +SLS +E EYI
Sbjct: 1412 MYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1471

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1472 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH 1521

HSP 2 Score: 148.7 bits (374), Expect = 5.0e-32
Identity = 88/213 (41.31%), Postives = 121/213 (56.81%), Query Frame = 1


Query: 1   MEMLKEGGSTSKPSILDGKNYSYWKTRMTV------------VISGWKL-LMITVDDKYV 60
           M M KEGG  ++P ILDG NY YWK RM              VI GW+   M+  + K  
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KSEEEWTNAEEQASLENLRALIAIYDGVDLNVFKLI------KDAWKVLEVAFEGTS 120
              K EE+WT  E++ +L N +AL A+++GVD N+F+LI      KDAW++L+   EGTS
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KI----------------------IVEYNVRVLEITNDSFNIGEGIPKSKLVRMVLWSLP 171
           K+                      I ++++ +LEI N    +GE +   KLVR +L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLP 180

HSP 3 Score: 144.4 bits (363), Expect = 9.5e-31
Identity = 79/159 (49.69%), Postives = 98/159 (61.64%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF PVARLE I LLL +AC+ K KLYQMD
Sbjct: 1119 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMD 1178

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEE YV QPKGF+DP    H  +L K LY                    G
Sbjct: 1179 VKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1238

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1239 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1276

HSP 4 Score: 38.5 bits (88), Expect = 7.3e+01
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 1


Query: 156 LTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLKPKLKEAKIEYE 215
           +T DEL    R   I S  I    A  K+ I  L  E +     IS LK ++     + E
Sbjct: 366 ITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISKLKGEVGFLNSKLE 425

Query: 216 KMFKSVKMLNSGTNSLNQILNTG 237
            M KS+KMLN G++ L+++L  G
Sbjct: 426 NMTKSIKMLNKGSDMLDZVLQLG 448

HSP 5 Score: 367.9 bits (943), Expect = 5.3e-98
Identity = 192/412 (46.60%), Postives = 252/412 (61.17%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I+    +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 586 STSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 645

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 646 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMK 705

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             L   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 706 KILDKSAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 765

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV F+R K    +V   L   LQRE+   I  IRSDHGR+
Sbjct: 766 ESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGRE 825

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN  F   C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 826 FENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 885

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 886 NTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAG 945

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVINDGEKISLRGCDDEDADDKNDN 615
           IFLGYS NSRAYRVFN  T+ VME+INVV++D      +   +ED     DN
Sbjct: 946 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDV-EEDVRTSGDN 996

[Close]

BLAST of Cucsa.261680 vs. NCBI nr
Match: gi|29423273|gb|AAO73523.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 198.0 bits (502), Expect = 7.2e-47
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 747  VDDIIFGGFQDDILYLTASRQDISYAEGVCALFQV---------AKIIIKYVHVTYDFGI 806
            VD   +      +LYLTASR DI+YA GVCA +Q           K I+KYV+ T D+GI
Sbjct: 1351 VDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGI 1410

Query: 807  LYSFVTNSFLVGYYDAGWAGCSDDRKNTLEGCFFLGNNLISWFNKKQNSISLSKSEVEYI 866
            +Y   ++S LVGY DA WAG +DDRK+T  GCF+LGNNLISWF+KKQN +SLS +E EYI
Sbjct: 1411 MYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1470

Query: 867  VVGSARSQLIWMKQMLCEYGISQDTMILYCDSISVIDISMNLVQHSRTKH 908
              GS+ SQL+WMKQML EY + QD M LYCD++S I+IS N VQHSRTKH
Sbjct: 1471 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH 1520

HSP 2 Score: 144.8 bits (364), Expect = 7.2e-31
Identity = 88/213 (41.31%), Postives = 120/213 (56.34%), Query Frame = 1


Query: 1   MEMLKEGGSTSKPSILDGKNYSYWKTRMTV------------VISGWKL-LMITVDDKYV 60
           M M KEGG  ++P ILDG NY YWK RM              VI GW+   M+  + K  
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KSEEEWTNAEEQASLENLRALIAIYDGVDLNVFKLI------KDAWKVLEVAFEGTS 120
              K EE+WT  E++ +L N +AL A+++GVD N+F+LI      KDA ++L+   EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTS 120

Query: 121 KI----------------------IVEYNVRVLEITNDSFNIGEGIPKSKLVRMVLWSLP 171
           K+                      I ++++ +LEI N    +GE I   KLVR +L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

HSP 3 Score: 144.4 bits (363), Expect = 9.5e-31
Identity = 80/159 (50.31%), Postives = 98/159 (61.64%), Query Frame = 1


Query: 622  RTLETETETETPSKHVAPSSHAKKNHVDFDETFEPVARLEVICLLLIIACMQKIKLYQMD 681
            +T E    T   ++ VA   + +   VDFDETF PVARLE I LLL +AC+ K KLYQMD
Sbjct: 1118 KTNEEGVITRNKARLVA-QGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMD 1177

Query: 682  VKSAFLNGYLNEEVYVAQPKGFIDPVFSQHASKLNKTLY--------------------G 741
            VKSAFLNGYLNEEVYV QPKGF DP    H  +L K LY                    G
Sbjct: 1178 VKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQG 1237

Query: 742  YVGGGTDKTLFISWTNKNIIMAQLYVDDIIFGGFQDDIL 761
            Y  GG DKTLF+    +N+++AQ+YVDDI+FGG  +++L
Sbjct: 1238 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1275

HSP 4 Score: 42.0 bits (97), Expect = 6.6e+00
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 1


Query: 145 TAIEEAHDITTLTLDELFRSLRTFEISSLSI--SRAIQKENIQKLLDENQQLLTVISSLK 204
           TA + +   + +T DEL  S R   I S  I    A  K+ I  L  E +     IS LK
Sbjct: 354 TAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELK 413

Query: 205 PKLKEAKIEYEKMFKSVKMLNSGTNSLNQILNTG 237
            ++     + E M KS+KMLN G+++L+++L  G
Sbjct: 414 GEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLG 447

HSP 5 Score: 367.9 bits (943), Expect = 5.3e-98
Identity = 191/412 (46.36%), Postives = 253/412 (61.41%), Query Frame = 1


Query: 234 NTGHVTFDDGAKGRILAKENIVNTYLARLDDVRYVEGLTTNLISISQLCDQGYTMNFCKE 293
           +T +VTF DG+KG+I+    +V+  L  L+ V  V+GLT NLISISQLCD+G+ +NF K 
Sbjct: 584 STSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 643

Query: 294 ECIVTDNNNAEIIKGIRQIDNCYHWISNKNIF---CNLSKEEQTQLWHRKLGHASLSTVS 353
           EC+VT+  +  ++KG R  DNCY W   +  +   C  SKE++ ++WH++ GH  L  + 
Sbjct: 644 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMK 703

Query: 354 NDLKHDAILRIPNLDINSQLFYKDCQRGKKIRTSHKSISECYTNRVLEFLHMDLMGPMQT 413
             +   A+  IPNL I       +CQ GK+++ SH+ +    T+RVLE LHMDLMGPMQ 
Sbjct: 704 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 763

Query: 414 KSLDRKKYVFICVDDYSWFTWVRFLRGKVEISKVCISLCPSLQREQGKNIVIIRSDHGRD 473
           +SL  K+Y ++ VDD+S FTWV+F+R K E  +V   L   LQRE+   I  IRSDHGR+
Sbjct: 764 ESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGRE 823

Query: 474 IENEEFDNLCEKEGIHREYSAPLTPQQNGVVERKNRTLQKMVRIMLHAKNLSLQFWAEAM 533
            EN      C  EGI  E+SA +TPQQNG+VERKNRTLQ+  R+MLHAK L    WAEAM
Sbjct: 824 FENSRLTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 883

Query: 534 HTTCHIHNRITVHTSTTLTIYELWK----------------------------DVKSDKG 593
           +T C+IHNR+T+   T  T+YE+WK                            D KSD G
Sbjct: 884 NTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAG 943

Query: 594 IFLGYSQNSRAYRVFNIHTQFVMETINVVINDGEKISLRGCDDEDADDKNDN 615
           IFLGYS NSRAYRVFN  T+ VME+INVV++D      +   +ED     DN
Sbjct: 944 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDV-EEDVRTSGDN 994

The following BLAST results are available for this feature:

BLAST of Cucsa.261680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	3.3e-31	32.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.8e-26	23.80	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YL22B_YEAST	5.0e-16	24.83	Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YG21B_YEAST	5.0e-16	24.83	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YF21B_YEAST	5.0e-16	24.83	Transposon Ty2-F Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cucsa.261680 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84VH8_SOYBN	2.2e-98	47.96	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VH8_SOYBN	1.0e-47	58.24	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VH6_SOYBN	1.3e-47	58.24	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
O65147_SOYBN	9.5e-46	56.47	Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2	[more]
Q84VI4_SOYBN	1.0e-47	58.24	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]

BLAST of Cucsa.261680 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	5.2e-19	33.96	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.9e-13	33.33	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of Cucsa.261680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|29423279\|gb\|AAO73527.1\|	3.1e-98	47.96	gag-pol polyprotein [Glycine max]	[more]
gi\|29423279\|gb\|AAO73527.1\|	1.5e-47	58.24	gag-pol polyprotein [Glycine max]	[more]
gi\|3777527\|gb\|AAC64917.1\|	1.4e-45	56.47	gag-pol polyprotein [Glycine max]	[more]
gi\|29423282\|gb\|AAO73529.1\|	1.9e-47	58.24	gag-pol polyprotein [Glycine max]	[more]
gi\|29423273\|gb\|AAO73523.1\|	7.2e-47	58.24	gag-pol polyprotein [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf
IPR013103	RVT_2
IPR025724	GAG-pre-integrase_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.261680.1	Cucsa.261680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 395..511 score: 3.2
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 392..558 score: 20
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 395..547 score: 4.6
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 394..552 score: 3.92
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 642..721 score: 1.0
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 323..379 score: 2.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..883 score: 3.8E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 12..883 score: 3.8E
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 105..170 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.261680	CSPI05G01350	Wild cucumber (PI 183967)	cgycpiB398
Cucsa.261680	CsaV3_5G015350	Cucumber (Chinese Long) v3	cgycucB403

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.261680	Cucumber (Chinese Long) v2	cgycuB378
Cucsa.261680	Watermelon (Charleston Gray)	cgywcgB460
Cucsa.261680	Bottle gourd (USVL1VR-Ls)	cgylsiB426
Cucsa.261680	Melon (DHL92) v3.6.1	cgymedB436
Cucsa.261680	Watermelon (97103) v2	cgywmbB461
Cucsa.261680	Wax gourd	cgywgoB536