Cucsa.259520 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.259520
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BnaA05g01230D protein
Location	scaffold02229 : 5964664 .. 5966194 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATCATTTCTTTTTAAATTCTCATATAATATATTTACTGTAATTGTTCATTCATCATGGCGGGTCGTAATTTTGGTCGTCTGTACCGTTTTTCTTCTGCCAACCGACCCTTAGCTCCCGTCACCAATACTTCAGGCCAAGATTCGGCTCAGTACGATGGCCGTCGGTATTCTTCGTCCGCCCGAGACACGTCGCTGGAACCCCGGTCGTCACCGCCACGAGTTGCACTGAGGAGAGATGATCAACCCCTTCCTGCTTCTCCCACGTACTCTATCAAGAAGGCCACTTCTCCCCCGTCTTCTCCGTCGTATAGGGCTCCGGCTGCTCGTGGGATCAGCTCGCCGACTAAGACGGTGGATGAATACCCCAAGTATAAACCTAATACTCAACCCAGGTTGGTTAAACAAATTTAATAAGCTTGCTATTTTATTTTTATTTAGAAAGAAAACAAATTGAATTAATTTGTAGACAAATAATTTATTTTAATTAAGAACATAGATTAGATTTTTGAACTTGCAATTAAAATGTAATTAAATAGCAAAACAAAATTAAACAAGTGAAAACAAATGGAGTTTATAAACATCATCTTGTAATCAATGTTTTGTTTCTAAAAATTAAGTTTAATTTCTCTTCAATTATAAATTAAACTTTTTCAAAAAATAAAAAAATATGTTTTTAAAACTACTTTAATCATAAACAATTTTTAAAATATATAAAACACAGATGTTGAATCAAATAAATTTATAGAATTAGTTGTGAAAAACAAAAGTAGAGTTACTCCTCAAAATAGCTATGAAACGAATCAAAATTTTGATGCTTTAATCATCGTTACACCAACTATTGCATGAATAACAAGTATTTGTTCATATTTTTAACGAAGGTCACCGGAGGCCAAACAAAAACCAGGGATATTCCACAAGAGTACTGTCGAGAAGGTGACGAAATCGGACCGTTATCATGAATCGAGCAAAACGTTGTCATCCCACAAGGGGCAGCTGCAACCAAATGCAATTAACATCAAGGGAGAGAATGTTGGGGCAGTAATGGAAATTGTTGAGTCGTCAAAACGGGAAGGGGGGCATATGATAAAGAAGATCAAAGAGACAGCAAGAGGAATTTTAAACAACAACGACATGGCTAATGATCAAAACAACGAAGCTTCAAAAGCACCTAATTCCTCAATGCCAACAAACACTTTTCTAAATAGCAATTTTCAGAGTGTCAACAATTCCCTTCTTTACAATGCAAATTTGACTCACCGTGATCCCGGTTTACACCTCGCTTTCTCTCGGGACCCGACTGGTGAGCGGTCTGGTGTTGATGATCACAAGAAACAACACCATACAAGATACTAGAGAAAACACAGAGGATGGAGATGAAACAAAATATGATATATTATATATTGTTATATTTTATGAGAATAAAATGAATTTTATATGCTGATTTTATGTAACGAAGAGAAAGATGAGGATTCAAGTTTTATTATTGTGTGGTTCAGTGGTTGGCTTTTGCCATTTCTTTACGTACCT

mRNA sequence

ATTCATCATTTCTTTTTAAATTCTCATATAATATATTTACTGTAATTGTTCATTCATCATGGCGGGTCGTAATTTTGGTCGTCTGTACCGTTTTTCTTCTGCCAACCGACCCTTAGCTCCCGTCACCAATACTTCAGGCCAAGATTCGGCTCAGTACGATGGCCGTCGGTATTCTTCGTCCGCCCGAGACACGTCGCTGGAACCCCGGTCGTCACCGCCACGAGTTGCACTGAGGAGAGATGATCAACCCCTTCCTGCTTCTCCCACGTACTCTATCAAGAAGGCCACTTCTCCCCCGTCTTCTCCGTCGTATAGGGCTCCGGCTGCTCGTGGGATCAGCTCGCCGACTAAGACGGTGGATGAATACCCCAAGTATAAACCTAATACTCAACCCAGGTCACCGGAGGCCAAACAAAAACCAGGGATATTCCACAAGAGTACTGTCGAGAAGGTGACGAAATCGGACCGTTATCATGAATCGAGCAAAACGTTGTCATCCCACAAGGGGCAGCTGCAACCAAATGCAATTAACATCAAGGGAGAGAATGTTGGGGCAGTAATGGAAATTGTTGAGTCGTCAAAACGGGAAGGGGGGCATATGATAAAGAAGATCAAAGAGACAGCAAGAGGAATTTTAAACAACAACGACATGGCTAATGATCAAAACAACGAAGCTTCAAAAGCACCTAATTCCTCAATGCCAACAAACACTTTTCTAAATAGCAATTTTCAGAGTGTCAACAATTCCCTTCTTTACAATGCAAATTTGACTCACCGTGATCCCGGTTTACACCTCGCTTTCTCTCGGGACCCGACTGGTGAGCGGTCTGGTGTTGATGATCACAAGAAACAACACCATACAAGATACTAGAGAAAACACAGAGGATGGAGATGAAACaaaatatgatatattatatattgttatattttatgagaataaaatgaattttatatGCTGATTTTATGTAACGAAGAGAAAGATGAGGATTCAAGTTTTATTATTGTGTGGTTCAGTGGTTGGCTTTTGCCATTTCTTTACGTACCT

Coding sequence (CDS)

ATGGCGGGTCGTAATTTTGGTCGTCTGTACCGTTTTTCTTCTGCCAACCGACCCTTAGCTCCCGTCACCAATACTTCAGGCCAAGATTCGGCTCAGTACGATGGCCGTCGGTATTCTTCGTCCGCCCGAGACACGTCGCTGGAACCCCGGTCGTCACCGCCACGAGTTGCACTGAGGAGAGATGATCAACCCCTTCCTGCTTCTCCCACGTACTCTATCAAGAAGGCCACTTCTCCCCCGTCTTCTCCGTCGTATAGGGCTCCGGCTGCTCGTGGGATCAGCTCGCCGACTAAGACGGTGGATGAATACCCCAAGTATAAACCTAATACTCAACCCAGGTCACCGGAGGCCAAACAAAAACCAGGGATATTCCACAAGAGTACTGTCGAGAAGGTGACGAAATCGGACCGTTATCATGAATCGAGCAAAACGTTGTCATCCCACAAGGGGCAGCTGCAACCAAATGCAATTAACATCAAGGGAGAGAATGTTGGGGCAGTAATGGAAATTGTTGAGTCGTCAAAACGGGAAGGGGGGCATATGATAAAGAAGATCAAAGAGACAGCAAGAGGAATTTTAAACAACAACGACATGGCTAATGATCAAAACAACGAAGCTTCAAAAGCACCTAATTCCTCAATGCCAACAAACACTTTTCTAAATAGCAATTTTCAGAGTGTCAACAATTCCCTTCTTTACAATGCAAATTTGACTCACCGTGATCCCGGTTTACACCTCGCTTTCTCTCGGGACCCGACTGGTGAGCGGTCTGGTGTTGATGATCACAAGAAACAACACCATACAAGATACTAG

Protein sequence

MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYSSSARDTSLEPRSSPPRVALRRDDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQKPGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRDPTGERSGVDDHKKQHHTRY*

Homology

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BLAST of Cucsa.259520 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 1.1e-151
Identity = 268/270 (99.26%), Postives = 269/270 (99.63%), Query Frame = 1


Query: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYSSSARDTSLEPRSSPPRVALRR 60
           MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRY SSARDTSLEPRSSPPRVALRR
Sbjct: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYPSSARDTSLEPRSSPPRVALRR 60

Query: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120
           DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK
Sbjct: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120

Query: 121 PGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGH 180
           PGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGH
Sbjct: 121 PGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGH 180

Query: 181 MIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHR 240
           MIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHR
Sbjct: 181 MIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHR 240

Query: 241 DPGLHLAFSRDPTGERSGVDDHKKQHHTRY 271
           DPGLHLAFSR+PTGERSGVDDHKKQHHTRY
Sbjct: 241 DPGLHLAFSRNPTGERSGVDDHKKQHHTRY 270

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BLAST of Cucsa.259520 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.3e-26
Identity = 90/259 (34.75%), Postives = 134/259 (51.74%), Query Frame = 1


Query: 14  SANRPLAPVTNTSGQDSAQYDG-RRYSSSARDTSLEPRS-SPPRVALRRDDQPLPASPTY 73
           S  +PL+P    +     +Y+G RR S++    + +P   SPP         P P+ P +
Sbjct: 85  SPRKPLSPPPVHN-----RYEGERRTSATTSPKTFKPTHISPP---------PSPSKPRH 144

Query: 74  SIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSP-EAKQKPGIFHKSTVE 133
           S       P SP         ++ P   V   P++  + +PRSP E +QK  ++  +T E
Sbjct: 145 STVPTAVAPLSP---------LALPRSQVRREPEH--SLRPRSPPEIEQKKILYQTTTTE 204

Query: 134 KVTKSDRYHESSKTLSS------HKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKK 193
           K TK+D Y ++ +  +S         QLQ + INIKGENVGAVM I +SS  +G  +IKK
Sbjct: 205 KPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSS--DGSEVIKK 264

Query: 194 IKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGL 253
                +         + +N E +   NS+ P  +F+NSNFQ VNNS+LYN++L+HRDPGL
Sbjct: 265 KPTVGQ---------SKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGL 307

Query: 254 HLAFSRDPTGERSGVDDHK 264
           HLAF    +     + D +
Sbjct: 325 HLAFGSKKSKHGDSIHDSR 307

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BLAST of Cucsa.259520 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.4e-22
Identity = 86/247 (34.82%), Postives = 120/247 (48.58%), Query Frame = 1


Query: 40  SSARDTSLEPRSSPPRVALRRDDQPLPASPTYSIKKATSPPSSPSYR----------APA 99
           +S R  S  P SSP + A       + +SP  + K   SPP S   +           P 
Sbjct: 48  ASPRRESPRPLSSPSKKATSPFASRVDSSP--AAKATRSPPDSIGDKYLERRNGETTPPL 107

Query: 100 ARGISSPTKTVDEYPKYKPNTQ----------PR-SPEAKQKPGIFHKSTVEKVTKSDRY 159
               S P KT    P   P +Q          PR  PE + K  +++K+  EK +KS+R 
Sbjct: 108 TPAKSRPAKTSPLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVYNKAADEKPSKSNRQ 167

Query: 160 HESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSK--REGGHMIKKIKETARGILNNN 219
            E     S H+ Q +P  + +KG NVGAVME+ +SS   R GG  +KK KET     ++ 
Sbjct: 168 SEHGSGKSVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKK-KETE----DDG 227

Query: 220 DMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRDPTGER 264
           D+    + +         P + F+NSNFQSVNNSLL++++  HRDPGLHL+F     G  
Sbjct: 228 DVDGYGHEDKKTGRKKKPPISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSFPNAADGGG 287

[Close]

BLAST of Cucsa.259520 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 85/301 (28.24%), Postives = 130/301 (43.19%), Query Frame = 1


Query: 5   NFGRLYRFSSANRPLAPVTNTSGQDSAQ--YDGRRYSSSARDTSLEPRSSPPRVALRRDD 64
           N  RL R       + P    + Q + +  Y+   Y++S       P  + PR   R   
Sbjct: 3   NLPRLGRTRQRLSSVPPPVPAAAQPAVEPKYETMPYATSITT----PAPASPR---RESP 62

Query: 65  QPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTV-DEY--------------PKYK 124
           +PL +SP+   KKATSP +S    +PAA+   SP  ++ D+Y               K +
Sbjct: 63  RPL-SSPS---KKATSPFASRVDSSPAAKATRSPPDSIGDKYLERRNGETTPPLTPAKSR 122

Query: 125 P-NTQPRSPEAKQKPGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENV-- 184
           P  T P SP A  +  +   +      +     E+   + +     +P+  N + E+   
Sbjct: 123 PAKTSPLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVYNKAADEKPSKSNRQSEHGSG 182

Query: 185 --------------------GAVMEIVESSK--REGGHMIKKIKETARGILNNNDMANDQ 244
                               GAVME+ +SS   R GG  +KK KET     ++ D+    
Sbjct: 183 KSVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKK-KETE----DDGDVDGYG 242

Query: 245 NNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRDPTGERSGVDDH 264
           + +         P + F+NSNFQSVNNSLL++++  HRDPGLHL+F     G  + VD  
Sbjct: 243 HEDKKTGRKKKPPISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSFPNAADGGGAVVDGD 287

HSP 2 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 89/289 (30.80%), Postives = 132/289 (45.67%), Query Frame = 1


Query: 6   FGRLYRFSSANR-----------------PLAPVTNTSGQDSAQYDGRRYSSSARDTSLE 65
           +GR +R S+ +R                 PLAP   T               S+      
Sbjct: 7   YGRRWRLSTVSRLAPTATQSVQEPEPEILPLAPTIQTLQPFEPTPPAAAAPPSSTPGEPT 66

Query: 66  PRSSPPRVALRRDDQPL-PASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYK 125
           PR SPP  + + +   +  ASP   +K A SPP SP  ++   R   SP    +     +
Sbjct: 67  PRISPPAASPKYEATVIREASPP--LKPARSPPVSPPRKSVDPRHSISPNSYQEPLKPTR 126

Query: 126 PNTQ----PRSPEAKQKPGIFHKSTVEKVTKSDRYHESSKTLSSHKGQ----LQPNAINI 185
           P+      P+S +    P    K  VE+  K+D + +S + + +   +    LQ  AIN+
Sbjct: 127 PSLSTLALPKSADVTTVPSAI-KPEVEQ--KTDSFKKSDRQVDNVSAKPPPSLQAKAINL 186

Query: 186 KGENVGAVMEIVE-SSKREGGHMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNT 245
            G+N+GAVM+I + S K  GG + +KI ET  G+   NDM   +         +  P   
Sbjct: 187 TGDNIGAVMKINQFSDKISGGEVTRKI-ETKTGVQQENDMEKSRRE-------TEFPMTP 246

Query: 246 FLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRDPTGERSGVDDHKKQHH 268
             NSNFQ VNNS++YN++ + RDPGLHL FS     E + VD +KK  +
Sbjct: 247 ITNSNFQEVNNSVMYNSSCSGRDPGLHLDFS-GQKDEAATVDGNKKSKY 281

[Close]

BLAST of Cucsa.259520 vs. TrEMBL
Match: M5XHL9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024582mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 82/251 (32.67%), Postives = 115/251 (45.82%), Query Frame = 1


Query: 45  TSLEPRSSP-PRVALRRDDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEY 104
           T+ EP ++P PR       +  P SP     K+ +PP SP    P               
Sbjct: 233 TAREPYNAPSPRTIRPAATKTPPQSPKI---KSIAPPPSPFTLPP--------------- 292

Query: 105 PKYKPNT-----QPRSP-EAKQK---PGI-FHKSTVEKVTKS---DRYHESSKTLSSHKG 164
           P+ KP+T     QPR P EA+QK   P I  H S  E  TK     R   +S T     G
Sbjct: 293 PQLKPSTSDQTEQPRIPMEAEQKTVLPSINAHGSKHEGETKERAITRKKPASDTSDHEAG 352

Query: 165 QLQPNAINIKGENVGAVMEIVESSKREG-GHMIKKIKETARGIL--------NNNDMAND 224
            ++   I I GEN GA ME+ +S ++ G G   + + +   G          NN+  ++ 
Sbjct: 353 GMR--VITIAGENRGAFMELKQSPQKHGLGEQSQYLCKKGNGKTVTGTQSDQNNSSSSSS 412

Query: 225 QNNEASKAPN-----------------SSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGL 256
            + E  K  +                 S+ PT  F+NSN Q +NNS++YN +LTH DPG+
Sbjct: 413 SSGEEGKGKSKSKDKSLKAGKAAGKSASAQPTRAFMNSNVQGINNSIVYNTSLTHHDPGV 463

[Close]

BLAST of Cucsa.259520 vs. TAIR10
Match: AT2G46630.1 (AT2G46630.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-10
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 1


Query: 146 SSHKGQLQPNAINIKGENVGAV---MEIVESSKREG-GHMIKKIK----ETARGILNNND 205
           S  +  +    I I GEN GAV   +   + +K  G G    ++     E  R + +++ 
Sbjct: 254 SDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHGTGEKGRRLQSSSS 313

Query: 206 MANDQNNEASKAP-------NSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSR 253
            ++D+     K         NS++P   F+NSN Q +NNS++YN+  +H DPG+HL  SR
Sbjct: 314 SSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMINNSIVYNSTASHHDPGVHLKISR 373

[Close]

BLAST of Cucsa.259520 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 543.9 bits (1400), Expect = 1.6e-151
Identity = 268/270 (99.26%), Postives = 269/270 (99.63%), Query Frame = 1


Query: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYSSSARDTSLEPRSSPPRVALRR 60
           MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRY SSARDTSLEPRSSPPRVALRR
Sbjct: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYPSSARDTSLEPRSSPPRVALRR 60

Query: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120
           DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK
Sbjct: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120

Query: 121 PGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGH 180
           PGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGH
Sbjct: 121 PGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGH 180

Query: 181 MIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHR 240
           MIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHR
Sbjct: 181 MIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHR 240

Query: 241 DPGLHLAFSRDPTGERSGVDDHKKQHHTRY 271
           DPGLHLAFSR+PTGERSGVDDHKKQHHTRY
Sbjct: 241 DPGLHLAFSRNPTGERSGVDDHKKQHHTRY 270

[Close]

BLAST of Cucsa.259520 vs. NCBI nr
Match: gi|659074886|ref|XP_008437848.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo])

HSP 1 Score: 466.8 bits (1200), Expect = 2.5e-128
Identity = 234/270 (86.67%), Postives = 247/270 (91.48%), Query Frame = 1


Query: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYSSSARDTSLEPRSSPPRVALRR 60
           MAGRNFGR+YRFSSANRPLAP TNTSGQDSAQYD R+Y S+ RDTSLEPRSSPPR++LR+
Sbjct: 1   MAGRNFGRMYRFSSANRPLAPATNTSGQDSAQYDRRQYPSATRDTSLEPRSSPPRISLRK 60

Query: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120
           DD PLPASPTYSIKKATSPPSSP YR  AAR ISSP K VDEYPKYKP TQPRSPEAKQK
Sbjct: 61  DDPPLPASPTYSIKKATSPPSSPPYRGMAAREISSPPKMVDEYPKYKPITQPRSPEAKQK 120

Query: 121 PGIFHKSTVEKVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGH 180
           PGI   +TVEKVTKSDRYHE SK +SSHKGQ QPNAINIKGENVGAVMEIVESSKREGGH
Sbjct: 121 PGIHKTTTVEKVTKSDRYHEPSKAVSSHKGQ-QPNAINIKGENVGAVMEIVESSKREGGH 180

Query: 181 MIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHR 240
           MIKKIKETARGILNNNDMANDQNNEASK  NSSMPTNTFLNSNFQSVNNSLLYNANLT+R
Sbjct: 181 MIKKIKETARGILNNNDMANDQNNEASKTTNSSMPTNTFLNSNFQSVNNSLLYNANLTYR 240

Query: 241 DPGLHLAFSRDPTGERSGVDDHKKQHHTRY 271
           DPGLHL+FSR+PTG+R  VDD KKQHHT+Y
Sbjct: 241 DPGLHLSFSRNPTGDRFPVDD-KKQHHTKY 268

[Close]

BLAST of Cucsa.259520 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 8.0e-26
Identity = 90/260 (34.62%), Postives = 131/260 (50.38%), Query Frame = 1


Query: 14  SANRPLAPVTNTSGQDSAQYDGRRYSSSARDTSLEPRS-SPPRVALRRDDQPLPASPTYS 73
           S  +PL+P +  +  D      RR S++    + +P   SPP         P P  P +S
Sbjct: 87  SPRKPLSPPSTYNRHDGE----RRTSATTSPKTFKPTYISPP---------PSPPKPKHS 146

Query: 74  IKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSP-EAKQKPGIFHKSTVEK 133
                  P SP         ++ P   V   P+   + +PRSP E +QK  ++  +T EK
Sbjct: 147 TAATVVAPLSP---------LALPRSEVRREPER--SIRPRSPPEIEQKKILYQTTTTEK 206

Query: 134 VTKSD-----RYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKKIK 193
            TK+D     +Y  S      H  QLQ + INIKG+NVGAVM I +SS  +G  ++KK  
Sbjct: 207 PTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSS--DGSEILKKKP 266

Query: 194 ETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHL 253
              +         + +N E +   NS+ P  +F+NSNFQ VNNS+LYN++L+HRDPGLHL
Sbjct: 267 SVGQ---------SKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 309

Query: 254 AFSRDPTGERSGVDDHKKQH 267
           A+S      + G   H+ +H
Sbjct: 327 AYS--SKNPKHGDSIHESRH 309

[Close]

BLAST of Cucsa.259520 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-25
Identity = 90/259 (34.75%), Postives = 134/259 (51.74%), Query Frame = 1


Query: 14  SANRPLAPVTNTSGQDSAQYDG-RRYSSSARDTSLEPRS-SPPRVALRRDDQPLPASPTY 73
           S  +PL+P    +     +Y+G RR S++    + +P   SPP         P P+ P +
Sbjct: 85  SPRKPLSPPPVHN-----RYEGERRTSATTSPKTFKPTHISPP---------PSPSKPRH 144

Query: 74  SIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSP-EAKQKPGIFHKSTVE 133
           S       P SP         ++ P   V   P++  + +PRSP E +QK  ++  +T E
Sbjct: 145 STVPTAVAPLSP---------LALPRSQVRREPEH--SLRPRSPPEIEQKKILYQTTTTE 204

Query: 134 KVTKSDRYHESSKTLSS------HKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKK 193
           K TK+D Y ++ +  +S         QLQ + INIKGENVGAVM I +SS  +G  +IKK
Sbjct: 205 KPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSS--DGSEVIKK 264

Query: 194 IKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGL 253
                +         + +N E +   NS+ P  +F+NSNFQ VNNS+LYN++L+HRDPGL
Sbjct: 265 KPTVGQ---------SKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGL 307

Query: 254 HLAFSRDPTGERSGVDDHK 264
           HLAF    +     + D +
Sbjct: 325 HLAFGSKKSKHGDSIHDSR 307

[Close]

BLAST of Cucsa.259520 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 88/255 (34.51%), Postives = 124/255 (48.63%), Query Frame = 1


Query: 17  RPLA--PVTNTSGQDSAQYDGRRY----SSSARDTSLEPRSSPPRVALRRDDQPLPASPT 76
           RPL+  P   TS   S +Y   R     S +A+ T   P S   +   RR+ +  P    
Sbjct: 56  RPLSSPPKKATSPFASPKYGDSRTRLDRSPAAKATMSPPDSVRDKYFERRNGETTPPLSP 115

Query: 77  YSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQKPGIFHKSTVE 136
              ++A +PP SP         ++ P   V  +       QPR     +  GI +  TVE
Sbjct: 116 AKSRRAKTPPLSP---------LALPRNQV--FTGNGTTAQPRVQPEVETKGIVYNKTVE 175

Query: 137 KVTKSDRYHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSK--REGGHMIKKIKET 196
           K +KS+R      +  SH+ + +P  I +KG NVGAVMEI +SS   R GG  +KK +  
Sbjct: 176 KPSKSNRSSGEYGSSKSHQKKQKPEVIKLKGHNVGAVMEINKSSTGYRLGGETLKKNETE 235

Query: 197 ARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAF 256
             G ++     + +     K P    P   F+NSNFQSVNNSLL++++  HRDPGLHLAF
Sbjct: 236 DVGDVHGYGHEDKKTETKKKEP----PITAFMNSNFQSVNNSLLFDSSCNHRDPGLHLAF 295

Query: 257 SRDPTGERSGVDDHK 264
                G+ + VD  K
Sbjct: 296 PDAVDGDGAIVDGQK 295

The following BLAST results are available for this feature:

BLAST of Cucsa.259520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3R5_CUCSA	1.1e-151	99.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1	[more]
A0A0A0L5T3_CUCSA	7.3e-26	34.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1	[more]
A0A0A0L320_CUCSA	6.4e-22	34.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1	[more]
A0A0A0L320_CUCSA	2.3e-11	28.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1	[more]
M5XHL9_PRUPE	1.2e-15	32.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024582mg PE=4 SV=1	[more]

BLAST of Cucsa.259520 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46630.1	6.5e-10	31.15	unknown protein	[more]

BLAST of Cucsa.259520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432014\|ref\|XP_004133795.1\|	1.6e-151	99.26	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus]	[more]
gi\|659074886\|ref\|XP_008437848.1\|	2.5e-128	86.67	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo]	[more]
gi\|659074888\|ref\|XP_008437849.1\|	8.0e-26	34.62	PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me...	[more]
gi\|449432016\|ref\|XP_004133796.1\|	1.0e-25	34.75	PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus]	[more]
gi\|659074890\|ref\|XP_008437851.1\|	1.4e-22	34.51	PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.259520.1	Cucsa.259520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 157..255 score: 1.2
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 157..255 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.259520	CmaCh06G009850	Cucurbita maxima (Rimu)	cgycmaB0725

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.259520	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.259520	Cucumber (Chinese Long) v3	cgycucB393
Cucsa.259520	Watermelon (97103) v2	cgywmbB445
Cucsa.259520	Watermelon (97103) v2	cgywmbB452
Cucsa.259520	Wax gourd	cgywgoB507
Cucsa.259520	Wax gourd	cgywgoB514
Cucsa.259520	Cucumber (Gy14) v1	cgycgyB116
Cucsa.259520	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.259520	Cucurbita maxima (Rimu)	cgycmaB0728
Cucsa.259520	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.259520	Cucurbita moschata (Rifu)	cgycmoB0703
Cucsa.259520	Cucurbita moschata (Rifu)	cgycmoB0712
Cucsa.259520	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.259520	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.259520	Wild cucumber (PI 183967)	cgycpiB387
Cucsa.259520	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.259520	Cucumber (Chinese Long) v2	cgycuB369
Cucsa.259520	Melon (DHL92) v3.5.1	cgymeB426
Cucsa.259520	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.259520	Watermelon (Charleston Gray)	cgywcgB446
Cucsa.259520	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.259520	Watermelon (97103) v1	cgywmB479
Cucsa.259520	Watermelon (97103) v1	cgywmB481
Cucsa.259520	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.259520	Cucurbita pepo (Zucchini)	cgycpeB0685
Cucsa.259520	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.259520	Bottle gourd (USVL1VR-Ls)	cgylsiB413
Cucsa.259520	Bottle gourd (USVL1VR-Ls)	cgylsiB415
Cucsa.259520	Melon (DHL92) v3.6.1	cgymedB420
Cucsa.259520	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.259520	Silver-seed gourd	carcgyB0148
Cucsa.259520	Silver-seed gourd	carcgyB1110