Cucsa.258300 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.258300
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BnaA04g26490D protein
Location	scaffold02229 : 5309424 .. 5310931 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGATATCCAAATTTCTGGCGGCAGACCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGTAACTTCTAATCATGGATTAATTTTTCGAATAATTTGTTTGGTTGTTCGTTCATTCGTTCGTTCCAGTTGATTCACTATTTTCGTGGTTCTTATGTAATGTTCTTACCAGGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTAAATCTCTCTCTTTCACTCTACTGAATCCAGAAAAGTAGAATTTTCTGCTTCGTTTATAGAAAAACGTTTAATTATTAGGGGTAGAAAAGTAGAATTTTCTGCTTCGTTTATAGAAAAACGTTTAATTATTAGGGGTAGAAAAGTAGGACGATTTAGGAATTTCATCGTATGAGTAATTTTCTAGTTTTTACATACTCCAGTGGGATTGTGAAGTTCAATGACTTTCTACTGCTTAATTTCTTGGGTGATTTGGCAATTTTCGATGGAGTTGAAACAAGTTCTGTTTGTTTGTGTGCTTGTTCTTTTGATATCATTCAAAAGTCTCATGATTTTCGTATAACTTTGTTCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGAGGTTTGATATGTATATTTTTTGGCCCTGTATTGATGAATTGACATATTGATTTAGTTTTACAAAGAAAAATCTTCCATTCGTAGTAAGCTTTGATCTCTAATGTCTTGAGTACTGATTCGAATCTGATTTATAAGAAATTCTTAATCATTACCTAATACTAAATGCAAATTCAAAGAAAATGTTCCATCATTTGAACTCGGAAATTGCTCTGTCAAGAATATCTCTTTCTTTTTCTTACTTTCTTAGGTGTTCAAACAAAAAGTAATCCCCATCATCTCAATCTTGAATCATATTACTAGCTGTATCGGATAATTTCATGTCCCCTTCATGAGTGTCTCCTAATGTGAATGTCTATAGAAACTCGAATTATAACGTATTTGGTCGTCTAATTTGAACTGGAAATCGGGTTGTGTCGTTTGATTCCATAAACGGTTTTTGTTATCATGTCTTTAGGTTGGCAATGGGTGCAGAGGCTGAATCTTCAGGGTACCATTAGCCCTTCGTTTTGGAGAAAATCTGGTGAAATGCATTGGCATTATTTGAACTCAAGTAGTTTATCATTGAAGATCCAATTCGTCTCATTCTTTTAGATCTCAGTCCCTTTCTTGTAATCTAATTCGAGTAGTACTCATTTGATATTTTTCCTTCTGTTTAGCATGTCCTTGTACATTATTTCATACTTTTCAATGAAAGCTCCACTTTTTTGTCAAGAAAACATATGGCTTATGGGTTTTATATTGAGCTTGCGTGTTCATATCCA

mRNA sequence

TGGGATATCCAAATTTCTGGCGGCAGACCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGTAACTTCTAATCATGGATTAATTTTTCGAATAATTTGTTTGGTTGTTCGTTCATTCGTTCGTTCCAGTTGATTCACTATTTTCGTGGTTCTTATGTAATGTTCTTACCAGGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGAGGTTGGCAATGGGTGCAGAGGCTGAATCTTCAGGGTACCATTAGCCCTTCGTTTTGGAGAAAATCTGGTGAAATGCATTGGCATTATTTGAACTCAAGTAGTTTATCATTGAAGATCCAAttcgtctcattcttttagatctcagtccctttcttgtaatctaattcgagtagtactcatttgatatttttccttctgtttagcatgtccttgtacattatttcatacttttcaatgaaagctccacttttttgtcaagaaaaCATATGGCTTATGGGTTTTATATTGAGCTTGCGTGTTCATATCCA

Coding sequence (CDS)

ATGTTCTTACCAGGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGA

Protein sequence

MFLPGEKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKKVKTKLTATAKAKASQAMELDK*

Homology

[Close]

BLAST of Cucsa.258300 vs. TrEMBL
Match: A0A0A0L493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTATAKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Cucsa.258300 vs. TrEMBL
Match: A0A059CHY1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.6e-31
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
           MSKKNSLSRRKKQYEFDL+REK EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTATAKAKASQAMELDK 82
           VKTKLTA AKAKA+QAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of Cucsa.258300 vs. TrEMBL
Match: I1JK99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-29
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGSGKKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cucsa.258300 vs. TrEMBL
Match: I1KIC3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cucsa.258300 vs. TrEMBL
Match: A0A0B2QZ50_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cucsa.258300 vs. TAIR10
Match: AT2G45860.1 (AT2G45860.1 unknown protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-26
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQ+E++LQ+EK+ ++K  KKL A KN MKVDGSGKKKK  GGF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKK--GGFSVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELD 81
          +KTKLT TAKAKA+QAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

[Close]

BLAST of Cucsa.258300 vs. NCBI nr
Match: gi|700201390|gb|KGN56523.1| (hypothetical protein Csa_3G122470 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTATAKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Cucsa.258300 vs. NCBI nr
Match: gi|629113098|gb|KCW78058.1| (hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1   MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
           MSKKNSLSRRKKQYEFDL+REK EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTATAKAKASQAMELDK 82
           VKTKLTA AKAKA+QAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of Cucsa.258300 vs. NCBI nr
Match: gi|702326796|ref|XP_010053693.1| (PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDL+REK EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+K
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cucsa.258300 vs. NCBI nr
Match: gi|571443846|ref|XP_006576335.1| (PREDICTED: uncharacterized protein LOC100782399 [Glycine max])

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-29
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGSGKKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Cucsa.258300 vs. NCBI nr
Match: gi|955328203|ref|XP_014632806.1| (PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQYEFDLQREKQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

The following BLAST results are available for this feature:

BLAST of Cucsa.258300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L493_CUCSA	4.0e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1	[more]
A0A059CHY1_EUCGR	8.6e-31	87.65	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 ...	[more]
I1JK99_SOYBN	2.1e-29	83.95	Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1	[more]
I1KIC3_SOYBN	1.4e-28	82.72	Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1	[more]
A0A0B2QZ50_GLYSO	1.4e-28	82.72	Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1	[more]

BLAST of Cucsa.258300 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45860.1	2.6e-26	72.50	unknown protein	[more]

BLAST of Cucsa.258300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201390\|gb\|KGN56523.1\|	5.7e-36	100.00	hypothetical protein Csa_3G122470 [Cucumis sativus]	[more]
gi\|629113098\|gb\|KCW78058.1\|	1.2e-30	87.65	hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis]	[more]
gi\|702326796\|ref\|XP_010053693.1\|	1.2e-30	87.65	PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis]	[more]
gi\|571443846\|ref\|XP_006576335.1\|	3.0e-29	83.95	PREDICTED: uncharacterized protein LOC100782399 [Glycine max]	[more]
gi\|955328203\|ref\|XP_014632806.1\|	2.0e-28	82.72	PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.258300.3	Cucsa.258300.3	mRNA
Cucsa.258300.2	Cucsa.258300.2	mRNA
Cucsa.258300.1	Cucsa.258300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 7..27 score: -coord: 57..66 scor
None	No IPR available	PANTHER	PTHR36745	FAMILY NOT NAMED	coord: 6..66 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.258300	CsaV3_3G008990	Cucumber (Chinese Long) v3	cgycucB387

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.258300	Melon (DHL92) v3.6.1	cgymedB431
Cucsa.258300	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.258300	Silver-seed gourd	carcgyB0447
Cucsa.258300	Silver-seed gourd	carcgyB0564
Cucsa.258300	Watermelon (97103) v2	cgywmbB452
Cucsa.258300	Wax gourd	cgywgoB524
Cucsa.258300	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.258300	Cucurbita maxima (Rimu)	cgycmaB0723
Cucsa.258300	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.258300	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.258300	Cucurbita moschata (Rifu)	cgycmoB0717
Cucsa.258300	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.258300	Wild cucumber (PI 183967)	cgycpiB382
Cucsa.258300	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.258300	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.258300	Melon (DHL92) v3.5.1	cgymeB438
Cucsa.258300	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.258300	Watermelon (Charleston Gray)	cgywcgB449
Cucsa.258300	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.258300	Watermelon (97103) v1	cgywmB477
Cucsa.258300	Watermelon (97103) v1	cgywmB479
Cucsa.258300	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.258300	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.258300	Cucurbita pepo (Zucchini)	cgycpeB0688
Cucsa.258300	Bottle gourd (USVL1VR-Ls)	cgylsiB415