Cucsa.257700 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.257700
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLOB domain-containing protein, putative
Locationscaffold02229 : 4912248 .. 4913501 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAAGAGACCTATGCTATTCCAAAATAATAATAATTATTATTGTTATTTCAATAATAAAACTATGTTTCAATCTTCCAAAACCTACATTTCCTTCTAATTTGCAAATCCCATCAAACTAAGAGAGAGAGAGAGAGAAATGTAAATGGAAAGAAAAGAAGAATTATATACCTTGTGATCCACAAACCTCAAAGTCAGCTCCACACATATATATGTGTGTGTGTATACATATTTGTCTTGTCTTCCAGTAAGCTTTGCTTAGGTTTTCCTGAAAGAACTCAAGCAAGCAAGGTTGAGATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGTGAAAACAAACATTTGACTTCTGATTGTTGGTTGCCAAAAGGTTAAGCTTATGGAAATCCAAATGCTTCTTATGAAAACTGGCACAATTTTAAAAGACTAAACAATTATCAAATGGAGCCTTAATTGTGAACTTATTATCATATATCATCTACATATGAGAAACAGACTAGTACGGATTCGATGTTTAGTTTTCAATTTCAGTTTCACATAAATGCCAGAATTTGAGTGATATACATTTCTTTTTAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTtCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAATGGCTAATTGGAC

mRNA sequence

CAAAAAGAGACCTATGCTATTCCaaaataataataattattattgttatttcaataataaaaCTATGTTTCAATCTTCCAAAACCTACATTTCCTTCTAATTTGCAAATCCCATCAAACTAAGAGAGAGAGAGAGAGAAATGTAAATGGAAAGAAAAGAAGAATTATATACCTTGTGATCCACAAACCTCAAAGTCAGCTCcacacatatatatgtgtgtgtgtatacatatttgtcttgtcttccagTAAGCTTTGCTTAGGTTTTCCTGAAAGAACTCAAGCAAGCAAGGTTGAGATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAATGGCTAATTGGAC

Coding sequence (CDS)

ATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTtCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAA

Protein sequence

MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA*
Homology
[Close]
BLAST of Cucsa.257700 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-55
Identity = 111/200 (55.50%), Postives = 133/200 (66.50%), Query Frame = 1 

Query: 7   GGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNV 66
           GG  + G G    G GGPCGACKFLRRKC+P CIFAPYFDSEQGS +FAAVHKVFGASNV
Sbjct: 20  GGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNV 79

Query: 67  SKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 126
           SK+LLHIP H+R DA +TICYEAQAR+R+P+ GCV+HIFALQQQ   LQ E+SYLQA+LA
Sbjct: 80  SKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

Query: 127 TSELP----RSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS-- 186
           + ELP    R  P  Q QP      P L +I  LP+     P+  DL+ + D     S  
Sbjct: 140 SLELPQPQTRPQPMPQPQPLFFTPPPPL-AITDLPASVSPLPSTYDLASIFDQTTSSSAW 199

Query: 187 ---QEKLQSPLESYQIGSNN 198
              Q +   P   Y + S++
Sbjct: 200 ATQQRRFIDPRHQYGVSSSS 218

[Close]
BLAST of Cucsa.257700 vs. Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.0e-50
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 1 

Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           S G+ +   GGG    GGPCGACKFLRRKC+  CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 3   SSGNPSSSSGGG----GGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASN 62

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+L H+PEHKR DA ++IC+EAQAR+R+P+ GCVSHI +LQQQ   LQ E+SYLQA+L
Sbjct: 63  VSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHL 122

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLS----SIISLPSDCPSFPAESDLSLLLDPVEQVSQ 185
           AT ELP      Q QPP +    + S    SI  LP+  PS     DLS + +PV   + 
Sbjct: 123 ATLELP------QPQPPQVPVSSSGSLQALSITDLPTISPSV---YDLSSIFEPVMSSTW 178

Query: 186 EKLQSPLES 191
              Q P  S
Sbjct: 183 AMQQQPRPS 178

[Close]
BLAST of Cucsa.257700 vs. Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.9e-42
Identity = 81/134 (60.45%), Postives = 99/134 (73.88%), Query Frame = 1 

Query: 11  TKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKML 70
           T    GG  G  GPCGACKFLRRKC+  C+FAPYFD+EQG+  FAAVHKVFGASN SKML
Sbjct: 3   TGNLNGGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKML 62

Query: 71  LHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLAT-SE 130
           L +P HKRLDA +T+CYEA AR+R+PV G V H+F+LQ Q   LQ E++++QA L+T   
Sbjct: 63  LRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQR 122

Query: 131 LPRSAPHLQAQPPA 144
            P  +P  Q QPP+
Sbjct: 123 FPLQSPQ-QMQPPS 135

[Close]
BLAST of Cucsa.257700 vs. Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 2.9e-40
Identity = 85/186 (45.70%), Postives = 118/186 (63.44%), Query Frame = 1 

Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G GGPCGACKFLRRKC+ +C+FAPYFDS +G++HF AVHKVFGASN SK+L+ IP 
Sbjct: 3   GSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPA 62

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSE---LPR 135
            +RLDA +T+ YEA AR+R+PV GCV HIFALQ Q   LQ E++Y+Q  L+T +    P 
Sbjct: 63  SRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPN 122

Query: 136 SAPHLQAQPPALVKKPTLSSIIS---LPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLE 195
           S  + + +  +    P +SS+ S   + S     P  S         ++  +E ++ P E
Sbjct: 123 SQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQ-----QQEQEQPKEAIEVPTE 182

[Close]
BLAST of Cucsa.257700 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-38
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1 

Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G+G PCGACKFLRRKC  +CIFAPYF SEQG+  FAA+HKVFGASNVSK+LL++P 
Sbjct: 7   GTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPI 66

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 127
           H R +A +TI YEAQAR+ +PV GCVSHIFALQQQ A LQ ++  ++A +A
Sbjct: 67  HDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]
BLAST of Cucsa.257700 vs. TrEMBL
Match: A0A0A0L4D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126090 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 1.6e-127
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 

Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV
Sbjct: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS
Sbjct: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 232
           QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]
BLAST of Cucsa.257700 vs. TrEMBL
Match: A0A067KAC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14515 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.3e-59
Identity = 125/199 (62.81%), Postives = 143/199 (71.86%), Query Frame = 1 

Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           SGGS   G G  S+G  GPCGACKFLRRKC+P CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 10  SGGSGGGGGGSSSSGGSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASN 69

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+LLHIP HKRLDA +TICYEAQAR+R+PV GCV+HIFALQQQ   LQ E++YLQA+L
Sbjct: 70  VSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHL 129

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQ 185
           AT E+P S P     PPALV  P   SI  LPS   S PA  DLS L DP+ Q S    Q
Sbjct: 130 ATLEVP-SPPPPPPPPPALV-TPLPLSISDLPS-ASSMPATYDLSSLFDPITQPSWTMQQ 189

Query: 186 SPLESYQIGSNNFPSMGSI 205
             ++  Q G ++  S  +I
Sbjct: 190 RQMDPRQFGGSSTSSSPAI 205

[Close]
BLAST of Cucsa.257700 vs. TrEMBL
Match: B9IC05_POPTR (LOB domain protein 18 OS=Populus trichocarpa GN=POPTR_0014s06600g PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58
Identity = 129/212 (60.85%), Postives = 144/212 (67.92%), Query Frame = 1 

Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           SGG    G GGG  G GGPCGACKFLRRKC+P CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 18  SGGG--GGGGGGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASN 77

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+LLHIP HKRLDA +TICYEAQAR+R+PV GCV+HIFALQQQ   LQ E+SYLQA+L
Sbjct: 78  VSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHL 137

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQ 185
           A  E+P   P     PP LV  P L SI  LPS   S PA  DLS L DP+ Q S   +Q
Sbjct: 138 AALEVPSPPP---PPPPTLVTPPPL-SIADLPS-ASSIPAAYDLSCLFDPMMQPSWSNMQ 197

Query: 186 SPLESYQI----GSNNFPSMGSIDQQVVQKQL 214
            P     I    GS      G  D Q + ++L
Sbjct: 198 -PQRQMDIRQFGGSGGSSGTGGGDLQALAREL 221

[Close]
BLAST of Cucsa.257700 vs. TrEMBL
Match: A0A067HD70_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036534mg PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.7e-58
Identity = 130/230 (56.52%), Postives = 155/230 (67.39%), Query Frame = 1 

Query: 7   GGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNV 66
           GG  + G GGGS GS GPCGACKFLRRKC+P CIFAPYFDSEQG+ HFAAVHKVFGASNV
Sbjct: 17  GGGSSSGCGGGSGGSSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNV 76

Query: 67  SKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 126
           SK+LLHIP HKRLDA +TICYEAQAR+R+PV GCV+HIFALQQQ   LQ E+SYLQA+LA
Sbjct: 77  SKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLA 136

Query: 127 TSELPRSAPHLQAQPPALVKKPTLS--SIISLPSDCPSFPAESDLSLLLDPVEQVSQEKL 186
           T ELP   P     PP    + T    SI  LPS   S PA  DLS L DP+ Q +   +
Sbjct: 137 TLELPSPPP-----PPPSQNQMTAPPLSISGLPS-ASSMPATYDLSTLFDPMVQPAPWAM 196

Query: 187 QS-PLESYQIGSNNFPSMGSIDQQVVQKQLS----SMQRIGASLFPNIPK 230
           Q   ++  Q G  +  +M    ++++ +Q S    SM    AS  P++ K
Sbjct: 197 QQRQMDPRQFGGGDLQAMA---RELLHRQGSPPPGSMPCTDASSSPSLSK 237

[Close]
BLAST of Cucsa.257700 vs. TrEMBL
Match: B9RDE1_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1612280 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.7e-58
Identity = 129/200 (64.50%), Postives = 145/200 (72.50%), Query Frame = 1 

Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           SGGS   G GGGS+ SGGPCGACKFLRRKC+P CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 10  SGGSGGVG-GGGSSSSGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASN 69

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+LLHIP HKRLDA +TICYEAQAR+R+PV GCV+HIFALQQQ   LQ E+SYLQA+L
Sbjct: 70  VSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHL 129

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQE--K 185
           AT ELP   P     P +LV  P L SI  LPS   S PA  DLS L DP+ Q S     
Sbjct: 130 ATLELPSPPP--PPPPQSLVPPPPL-SIADLPS-ASSVPATYDLSSLFDPMTQPSPSWAM 189

Query: 186 LQSPLESYQIGSNNFPSMGS 204
            Q  ++  Q G  +  S+GS
Sbjct: 190 QQRQMDPRQFGGGS--SLGS 202

[Close]
BLAST of Cucsa.257700 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 217.2 bits (552), Expect = 1.0e-56
Identity = 111/200 (55.50%), Postives = 133/200 (66.50%), Query Frame = 1 

Query: 7   GGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNV 66
           GG  + G G    G GGPCGACKFLRRKC+P CIFAPYFDSEQGS +FAAVHKVFGASNV
Sbjct: 20  GGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNV 79

Query: 67  SKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 126
           SK+LLHIP H+R DA +TICYEAQAR+R+P+ GCV+HIFALQQQ   LQ E+SYLQA+LA
Sbjct: 80  SKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

Query: 127 TSELP----RSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS-- 186
           + ELP    R  P  Q QP      P L +I  LP+     P+  DL+ + D     S  
Sbjct: 140 SLELPQPQTRPQPMPQPQPLFFTPPPPL-AITDLPASVSPLPSTYDLASIFDQTTSSSAW 199

Query: 187 ---QEKLQSPLESYQIGSNN 198
              Q +   P   Y + S++
Sbjct: 200 ATQQRRFIDPRHQYGVSSSS 218

[Close]
BLAST of Cucsa.257700 vs. TAIR10
Match: AT4G00220.1 (AT4G00220.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-51
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 1 

Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           S G+ +   GGG    GGPCGACKFLRRKC+  CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 3   SSGNPSSSSGGG----GGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASN 62

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+L H+PEHKR DA ++IC+EAQAR+R+P+ GCVSHI +LQQQ   LQ E+SYLQA+L
Sbjct: 63  VSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHL 122

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLS----SIISLPSDCPSFPAESDLSLLLDPVEQVSQ 185
           AT ELP      Q QPP +    + S    SI  LP+  PS     DLS + +PV   + 
Sbjct: 123 ATLELP------QPQPPQVPVSSSGSLQALSITDLPTISPSV---YDLSSIFEPVMSSTW 178

Query: 186 EKLQSPLES 191
              Q P  S
Sbjct: 183 AMQQQPRPS 178

[Close]
BLAST of Cucsa.257700 vs. TAIR10
Match: AT2G45410.1 (AT2G45410.1 LOB domain-containing protein 19)

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-43
Identity = 81/134 (60.45%), Postives = 99/134 (73.88%), Query Frame = 1 

Query: 11  TKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKML 70
           T    GG  G  GPCGACKFLRRKC+  C+FAPYFD+EQG+  FAAVHKVFGASN SKML
Sbjct: 3   TGNLNGGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKML 62

Query: 71  LHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLAT-SE 130
           L +P HKRLDA +T+CYEA AR+R+PV G V H+F+LQ Q   LQ E++++QA L+T   
Sbjct: 63  LRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQR 122

Query: 131 LPRSAPHLQAQPPA 144
            P  +P  Q QPP+
Sbjct: 123 FPLQSPQ-QMQPPS 135

[Close]
BLAST of Cucsa.257700 vs. TAIR10
Match: AT4G00210.1 (AT4G00210.1 LOB domain-containing protein 31)

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-41
Identity = 85/186 (45.70%), Postives = 118/186 (63.44%), Query Frame = 1 

Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G GGPCGACKFLRRKC+ +C+FAPYFDS +G++HF AVHKVFGASN SK+L+ IP 
Sbjct: 3   GSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPA 62

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSE---LPR 135
            +RLDA +T+ YEA AR+R+PV GCV HIFALQ Q   LQ E++Y+Q  L+T +    P 
Sbjct: 63  SRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPN 122

Query: 136 SAPHLQAQPPALVKKPTLSSIIS---LPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLE 195
           S  + + +  +    P +SS+ S   + S     P  S         ++  +E ++ P E
Sbjct: 123 SQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQ-----QQEQEQPKEAIEVPTE 182

[Close]
BLAST of Cucsa.257700 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-39
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1 

Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G+G PCGACKFLRRKC  +CIFAPYF SEQG+  FAA+HKVFGASNVSK+LL++P 
Sbjct: 7   GTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPI 66

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 127
           H R +A +TI YEAQAR+ +PV GCVSHIFALQQQ A LQ ++  ++A +A
Sbjct: 67  HDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]
BLAST of Cucsa.257700 vs. NCBI nr
Match: gi|449433121|ref|XP_004134346.1| (PREDICTED: LOB domain-containing protein 18 [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 2.4e-127
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 

Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV
Sbjct: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS
Sbjct: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 232
           QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]
BLAST of Cucsa.257700 vs. NCBI nr
Match: gi|659075449|ref|XP_008438149.1| (PREDICTED: LOB domain-containing protein 18 [Cucumis melo])

HSP 1 Score: 446.0 bits (1146), Expect = 3.9e-122
Identity = 220/231 (95.24%), Postives = 225/231 (97.40%), Query Frame = 1 

Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRS GSCTKGKGGGSNGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHKV
Sbjct: 1   MSSRRSSGSCTKGKGGGSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCV+HIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQ YLATSELPR APHLQAQPPALVKKPTLSSI+SLPSDCPSFPAESDLSLLLDPVEQ S
Sbjct: 121 LQGYLATSELPRPAPHLQAQPPALVKKPTLSSIVSLPSDCPSFPAESDLSLLLDPVEQAS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 232
           QEKLQSPLESYQIGSNNFPSM SIDQQVVQKQLSSMQRIGASLFPN+PKR+
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMVSIDQQVVQKQLSSMQRIGASLFPNVPKRS 231

[Close]
BLAST of Cucsa.257700 vs. NCBI nr
Match: gi|802699504|ref|XP_012083561.1| (PREDICTED: LOB domain-containing protein 18 [Jatropha curcas])

HSP 1 Score: 235.3 bits (599), Expect = 1.0e-58
Identity = 125/199 (62.81%), Postives = 143/199 (71.86%), Query Frame = 1 

Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           SGGS   G G  S+G  GPCGACKFLRRKC+P CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 10  SGGSGGGGGGSSSSGGSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASN 69

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+LLHIP HKRLDA +TICYEAQAR+R+PV GCV+HIFALQQQ   LQ E++YLQA+L
Sbjct: 70  VSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHL 129

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQ 185
           AT E+P S P     PPALV  P   SI  LPS   S PA  DLS L DP+ Q S    Q
Sbjct: 130 ATLEVP-SPPPPPPPPPALV-TPLPLSISDLPS-ASSMPATYDLSSLFDPITQPSWTMQQ 189

Query: 186 SPLESYQIGSNNFPSMGSI 205
             ++  Q G ++  S  +I
Sbjct: 190 RQMDPRQFGGSSTSSSPAI 205

[Close]
BLAST of Cucsa.257700 vs. NCBI nr
Match: gi|224127394|ref|XP_002320063.1| (LOB domain protein 18 [Populus trichocarpa])

HSP 1 Score: 234.2 bits (596), Expect = 2.3e-58
Identity = 129/212 (60.85%), Postives = 144/212 (67.92%), Query Frame = 1 

Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           SGG    G GGG  G GGPCGACKFLRRKC+P CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 18  SGGG--GGGGGGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASN 77

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+LLHIP HKRLDA +TICYEAQAR+R+PV GCV+HIFALQQQ   LQ E+SYLQA+L
Sbjct: 78  VSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHL 137

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQ 185
           A  E+P   P     PP LV  P L SI  LPS   S PA  DLS L DP+ Q S   +Q
Sbjct: 138 AALEVPSPPP---PPPPTLVTPPPL-SIADLPS-ASSIPAAYDLSCLFDPMMQPSWSNMQ 197

Query: 186 SPLESYQI----GSNNFPSMGSIDQQVVQKQL 214
            P     I    GS      G  D Q + ++L
Sbjct: 198 -PQRQMDIRQFGGSGGSSGTGGGDLQALAREL 221

[Close]
BLAST of Cucsa.257700 vs. NCBI nr
Match: gi|1009168699|ref|XP_015902801.1| (PREDICTED: LOB domain-containing protein 18-like [Ziziphus jujuba])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 127/206 (61.65%), Postives = 145/206 (70.39%), Query Frame = 1 

Query: 2   SSRRSGGSCTK--GKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHK 61
           SS   GGS +   G GGGS G GGPCGACKFLRRKC+P CIFAPYFDSEQG+ HFAAVHK
Sbjct: 6   SSSGGGGSSSGSGGCGGGSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHK 65

Query: 62  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEIS 121
           VFGASNVSK+LLHIP HKRLDA +TICYEAQAR+R+PV GCV+HIFALQQQ   LQ E+S
Sbjct: 66  VFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELS 125

Query: 122 YLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQ- 181
           YLQA+LAT ELP   P     PP  +  P   +I  LPS   S P   DLS L +P+ Q 
Sbjct: 126 YLQAHLATLELPSPPP---PPPPTTLVTPPPLTIADLPS-ASSVPTTYDLSSLFEPMVQP 185

Query: 182 -VSQEKLQSPLESYQIGSNNFPSMGS 204
            V Q   Q P++  Q GS+   S G+
Sbjct: 186 WVMQ---QRPMDPRQFGSSTGSSSGT 204

The following BLAST results are available for this feature:
BLAST of Cucsa.257700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD18_ARATH1.8e-5555.50LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2[more]
LBD30_ARATH3.0e-5057.14LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1[more]
LBD19_ARATH8.9e-4260.45LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1[more]
LBD31_ARATH2.9e-4045.70LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2[more]
LBD16_ARATH2.7e-3865.77LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1[more]
BLAST of Cucsa.257700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4D4_CUCSA1.6e-127100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126090 PE=4 SV=1[more]
A0A067KAC7_JATCU7.3e-5962.81Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14515 PE=4 SV=1[more]
B9IC05_POPTR1.6e-5860.85LOB domain protein 18 OS=Populus trichocarpa GN=POPTR_0014s06600g PE=4 SV=1[more]
A0A067HD70_CITSI4.7e-5856.52Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036534mg PE=4 SV=1[more]
B9RDE1_RICCO4.7e-5864.50LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1612280 PE=4... [more]
BLAST of Cucsa.257700 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45420.11.0e-5655.50 LOB domain-containing protein 18[more]
AT4G00220.11.7e-5157.14 Lateral organ boundaries (LOB) domain family protein[more]
AT2G45410.15.0e-4360.45 LOB domain-containing protein 19[more]
AT4G00210.11.6e-4145.70 LOB domain-containing protein 31[more]
AT2G42430.11.5e-3965.77 lateral organ boundaries-domain 16[more]
BLAST of Cucsa.257700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433121|ref|XP_004134346.1|2.4e-127100.00PREDICTED: LOB domain-containing protein 18 [Cucumis sativus][more]
gi|659075449|ref|XP_008438149.1|3.9e-12295.24PREDICTED: LOB domain-containing protein 18 [Cucumis melo][more]
gi|802699504|ref|XP_012083561.1|1.0e-5862.81PREDICTED: LOB domain-containing protein 18 [Jatropha curcas][more]
gi|224127394|ref|XP_002320063.1|2.3e-5860.85LOB domain protein 18 [Populus trichocarpa][more]
gi|1009168699|ref|XP_015902801.1|3.0e-5861.65PREDICTED: LOB domain-containing protein 18-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.257700.1Cucsa.257700.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 24..122
score: 1.3
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 23..125
score: 22
NoneNo IPR availablePANTHERPTHR31529FAMILY NOT NAMEDcoord: 1..226
score: 1.3
NoneNo IPR availablePANTHERPTHR31529:SF3LOB DOMAIN-CONTAINING PROTEIN 18-RELATEDcoord: 1..226
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.257700Carg10203Silver-seed gourdcarcgyB0269
Cucsa.257700Carg14831Silver-seed gourdcarcgyB0693
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None