Cucsa.254820 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.254820
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02229 : 3035188 .. 3035814 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTCTCCCTCCAATTCCTTCCTTCTCCCACACTCACCGTCTCCTCCTTCATTCACCTTCTCTTCAATTCCAAAGCATCGCTCAACAGTCAGAGCAATCGCCAGATGCAGACCCACATGTTTCTGAGTCAACATCAATGCTCAATCTTACGCCTTTCTCCCCCcTCCTCACTTCCTCGATTCCGTCGCAACATTTCGTTTTCCACTTCCAGGTACTTCTTATTCAATCTTCGCTTCTCTCTTCCTCTCCATTATTCCAGTTTCCTTTACCACCACCACCACCACCCTATCTCCCACTTCACTAAATACCATTCCACTCAATTCTTCTTTCATTTTCGCGCGCAATTTTCCTTTTACCGCTTGAACTGCTACGATTTCATTACGGATTGGATTTTTTTtGTGTATTGGAAACTCCGCTGTTTCTTGTATAAATAATCAGATGATTCCCACTTCAGTGTTTCTCAAACGGAGACTTCTTCTTCTTGTTCTTTTGTTTTGGTCTATTTAATTGCATGATTAGACGTATGTTTAACTGTTTCACATCATTTTTCCAGCAGAGCCTTCCCACTCCACTTTTCATGGACCAACCACTTGGCTTTTAATGCTTGTCCTCTCTTGATCAGTGGAG

mRNA sequence

TCGTCTCCCTCCAATTCCTTCCTTCTCCCACACTCACCGTCTCCTCCTTCATTCACCTTCTCTTCAATTCCAAAGCATCGCTCAACAGTCAGAGCAATCGCCAGATGCAGACCCACATGTTTCTGAGTCAACATCAATGCTCAATCTTACGCCTTTCTCCCCCCTCCTCACTTCCTCGATTCCGTCGCAACATTTCGTTTTCCACTTCCAGAGCCTTCCCACTCCACTTTTCATGGACCAACCACTTGGCTTTTAATGCTTGTCCTCTCTTGATCAGTGGAG

Coding sequence (CDS)

TCGTCTCCCTCCAATTCCTTCCTTCTCCCACACTCACCGTCTCCTCCTTCATTCACCTTCTCTTCAATTCCAAAGCATCGCTCAACAGTCAGAGCAATCGCCAGATGCAGACCCACATGTTTCTGAGTCAACATCAATGCTCAATCTTACGCCTTTCTCCCCCcTCCTCACTTCCTCGATTCCGTCGCAACATTTCGTTTTCCACTTCCAGAGCCTTCCCACTCCACTTTTCATGGACCAACCACTTGGCTTTTAATGCTTGTCCTCTCTTGATCAGTGGAG

Protein sequence

VSLQFLPSPTLTVSSFIHLLFNSKASLNSQSNRQMQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSRAFPLHFSWTNHLAFNACPLLISGX
Homology
[Close]
BLAST of Cucsa.254820 vs. TrEMBL
Match: A0A0A0L4K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G143610 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 35 MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFST-SRAFPLHFSWTNHLAFNACPLLISG 94
          MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFST SRAFPLHFSWTNHL FNACPLLISG
Sbjct: 1  MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSSRAFPLHFSWTNHLDFNACPLLISG 60

[Close]
BLAST of Cucsa.254820 vs. NCBI nr
Match: gi|778678337|ref|XP_011650951.1| (PREDICTED: putative ion channel POLLUX-like 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1 

Query: 35 MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSRAFPLHFSWTNHLAFNACPLLISG 94
          MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSRAFPLHFSWTNHL FNACPLLISG
Sbjct: 1  MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSRAFPLHFSWTNHLDFNACPLLISG 59

[Close]
BLAST of Cucsa.254820 vs. NCBI nr
Match: gi|778678334|ref|XP_011650950.1| (PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 35 MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFST-SRAFPLHFSWTNHLAFNACPLLISG 94
          MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFST SRAFPLHFSWTNHL FNACPLLISG
Sbjct: 1  MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFSTSSRAFPLHFSWTNHLDFNACPLLISG 60

[Close]
BLAST of Cucsa.254820 vs. NCBI nr
Match: gi|659076277|ref|XP_008438593.1| (PREDICTED: putative ion channel POLLUX-like 2 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-20
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 35 MQTHMFLSQHQCSILRLSPPSSLPRFRRNISFS-TSRAFPLHFSWTNHLAFNACPLLISG 94
          MQ+HMFL QHQCSILRLSPPSSLPRFRRNI FS +SR  P HFSWT+HL FNACPLLISG
Sbjct: 1  MQSHMFLCQHQCSILRLSPPSSLPRFRRNIPFSNSSRTLPFHFSWTDHLDFNACPLLISG 60

The following BLAST results are available for this feature:
BLAST of Cucsa.254820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4K7_CUCSA1.8e-2496.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G143610 PE=4 SV=1[more]
BLAST of Cucsa.254820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778678337|ref|XP_011650951.1|1.1e-2598.31PREDICTED: putative ion channel POLLUX-like 2 isoform X2 [Cucumis sativus][more]
gi|778678334|ref|XP_011650950.1|2.6e-2496.67PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Cucumis sativus][more]
gi|659076277|ref|XP_008438593.1|5.1e-2083.33PREDICTED: putative ion channel POLLUX-like 2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098655 cation transmembrane transport
biological_process GO:0006813 potassium ion transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0008324 cation transmembrane transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.254820.1Cucsa.254820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.254820Csa3G143610Cucumber (Chinese Long) v2cgycuB366
Cucsa.254820CSPI03G12570Wild cucumber (PI 183967)cgycpiB383
Cucsa.254820CsaV3_3G012690Cucumber (Chinese Long) v3cgycucB387
Cucsa.254820Cla97C05G085740Watermelon (97103) v2cgywmbB452
Cucsa.254820BhiUN393G1Wax gourdcgywgoB530
Cucsa.254820Carg16593Silver-seed gourdcarcgyB0276
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.254820Cucumber (Gy14) v1cgycgyB079
Cucsa.254820Cucumber (Gy14) v1cgycgyB134
Cucsa.254820Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.254820Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.254820Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.254820Cucurbita maxima (Rimu)cgycmaB0731
Cucsa.254820Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.254820Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.254820Cucurbita moschata (Rifu)cgycmoB0714
Cucsa.254820Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.254820Cucurbita moschata (Rifu)cgycmoB0720
Cucsa.254820Wild cucumber (PI 183967)cgycpiB378
Cucsa.254820Wild cucumber (PI 183967)cgycpiB379
Cucsa.254820Wild cucumber (PI 183967)cgycpiB380
Cucsa.254820Cucumber (Chinese Long) v2cgycuB362
Cucsa.254820Cucumber (Chinese Long) v2cgycuB363
Cucsa.254820Cucumber (Chinese Long) v2cgycuB364
Cucsa.254820Melon (DHL92) v3.5.1cgymeB435
Cucsa.254820Melon (DHL92) v3.5.1cgymeB436
Cucsa.254820Melon (DHL92) v3.5.1cgymeB439
Cucsa.254820Watermelon (Charleston Gray)cgywcgB442
Cucsa.254820Watermelon (Charleston Gray)cgywcgB448
Cucsa.254820Watermelon (Charleston Gray)cgywcgB451
Cucsa.254820Watermelon (Charleston Gray)cgywcgB452
Cucsa.254820Watermelon (Charleston Gray)cgywcgB457
Cucsa.254820Watermelon (97103) v1cgywmB472
Cucsa.254820Watermelon (97103) v1cgywmB475
Cucsa.254820Watermelon (97103) v1cgywmB479
Cucsa.254820Watermelon (97103) v1cgywmB483
Cucsa.254820Cucurbita pepo (Zucchini)cgycpeB0672
Cucsa.254820Cucurbita pepo (Zucchini)cgycpeB0676
Cucsa.254820Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.254820Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.254820Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.254820Bottle gourd (USVL1VR-Ls)cgylsiB415
Cucsa.254820Bottle gourd (USVL1VR-Ls)cgylsiB418
Cucsa.254820Melon (DHL92) v3.6.1cgymedB432
Cucsa.254820Silver-seed gourdcarcgyB1077
Cucsa.254820Silver-seed gourdcarcgyB0269
Cucsa.254820Silver-seed gourdcarcgyB0383
Cucsa.254820Silver-seed gourdcarcgyB0888
Cucsa.254820Cucumber (Chinese Long) v3cgycucB385
Cucsa.254820Watermelon (97103) v2cgywmbB453
Cucsa.254820Watermelon (97103) v2cgywmbB457
Cucsa.254820Watermelon (97103) v2cgywmbB458
Cucsa.254820Wax gourdcgywgoB508
Cucsa.254820Wax gourdcgywgoB529