Cucsa.253370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.253370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mitochondrial transcription termination factor family protein
Location	scaffold02229 : 1986196 .. 1987259 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACTTGTTTCGCAGAATCCTTCTACTTAGATCTCCATCGTCAGTCTTTGCTCACGGTTTTTCCGAAAGTTCGTTGAGATCTCTTAGATACTTATCGACCTCTTCTGAGATTGTATCATCTCCGAAATCTCCTTCGTTGCCTTCTAATGCTGTTCAGCTCAATAATAAAGGGAAGGCTGTAATTGATTTACTTGCGAATCATGGATTCTCTGAATCACAAATCTCTTACCTTGCCGAGAGGTATCCTCCAATTCTTTCTTTCAACCCCGAGAAAAACCTGTTGCCCAAATTGTTGTTTTTtCAATCTAAAGCTCATTCTTCCTCAGAGATTTTCGAAATATTACGTTCAGATCCTTGGGTTTTATCAAATAGTTTAAACAAACGAATTATTCCAGCCTTTGATTACCTTCAAGCCGTGCTTGGAAGTGAGGAGAAGACTCTCGCTACCATAAAACAGTTTGCGCGTATTCTCGGATTGGATCTTCGAAATGCAGTTGGTCCCAATATTGAAATTCTGAAACAAATTGGAGTGCCGGATTCAAATATTTTAAAATATCTTCAGTACCAGCCTAGAGTGTTCATGACAAATTCCATCCAATTCAAGGAGACTGTAGAGAGAGTTAAGGAAATGGGATTCAACACTCAACAATGGCAGTTTGTTGATGCTGTTTTTTGTCTGCGATCAATGACCAAATCTACATGGGATAAAAAGGTTGAAGCTTATAGGAAATGGGGATTGTCTGAAGAAGAGATCCGTTCAGCTTTTAGAAAGCATCCACGGTGTATGACATTTTCTGAGGATAAGATTAATGGTGCAATGGATTTTTTTATCAATAAAATGGAATACGAATCATCTTTCGCTGCTAGAAGACCAATTTTACTTCAACTTAGTTTGAAGAAGAGGCTTTTGCCTAGAGGCCATGTTTATGAAGTTTTGCTGTCAAAGGGTTTGATTAAAAAGCACCAGAATCTTCCTTTCTTGTTGAAGTCTCCTGAAAAGCATTTCATAGAAAAATACATCAACCCGCATAAGGAGCAGATTCCTGGGCTGTTGGAGTT

mRNA sequence

ATGTCTAACTTGTTTCGCAGAATCCTTCTACTTAGATCTCCATCGTCAGTCTTTGCTCACGGGAAGGCTGTAATTGATTTACTTGCGAATCATGGATTCTCTGAATCACAAATCTCTTACCTTGCCGAGAGGTATCCTCCAATTCTTTCTTTCAACCCCGAGAAAAACCTGTTGCCCAAATTGTTGTTTTTTCAATCTAAAGCTCATTCTTCCTCAGAGATTTTCGAAATATTACGTTCAGATCCTTGGGTTTTATCAAATAGTTTAAACAAACGAATTATTCCAGCCTTTGATTACCTTCAAGCCGTGCTTGGAAGTGAGGAGAAGACTCTCGCTACCATAAAACAGTTTGCGCGTATTCTCGGATTGGATCTTCGAAATGCAGTTGGTCCCAATATTGAAATTCTGAAACAAATTGGAGTGCCGGATTCAAATATTTTAAAATATCTTCAGTACCAGCCTAGAGTGTTCATGACAAATTCCATCCAATTCAAGGAGACTGTAGAGAGAGTTAAGGAAATGGGATTCAACACTCAACAATGGCAGTTTGTTGATGCTGTTTTTTGTCTGCGATCAATGACCAAATCTACATGGGATAAAAAGGTTGAAGCTTATAGGAAATGGGGATTGTCTGAAGAAGAGATCCGTTCAGCTTTTAGAAAGCATCCACGGTGTATGACATTTTCTGAGGATAAGATTAATGGTGCAATGGATTTTTTTATCAATAAAATGGAATACGAATCATCTTTCGCTGCTAGAAGACCAATTTTACTTCAACTTAGTTTGAAGAAGAGGCTTTTGCCTAGAGGCCATGTTTATGAAGTTTTGCTGTCAAAGGGTTTGATTAAAAAGCACCAGAATCTTCCTTTCTTGTTGAAGTCTCCTGAAAAGCATTTCATAGAAAAATACATCAACCCGCATAAGGAGCAGATTCCTGGGCTGTTGGAGTT

Coding sequence (CDS)

ATGTCTAACTTGTTTCGCAGAATCCTTCTACTTAGATCTCCATCGTCAGTCTTTGCTCACGGGAAGGCTGTAATTGATTTACTTGCGAATCATGGATTCTCTGAATCACAAATCTCTTACCTTGCCGAGAGGTATCCTCCAATTCTTTCTTTCAACCCCGAGAAAAACCTGTTGCCCAAATTGTTGTTTTTtCAATCTAAAGCTCATTCTTCCTCAGAGATTTTCGAAATATTACGTTCAGATCCTTGGGTTTTATCAAATAGTTTAAACAAACGAATTATTCCAGCCTTTGATTACCTTCAAGCCGTGCTTGGAAGTGAGGAGAAGACTCTCGCTACCATAAAACAGTTTGCGCGTATTCTCGGATTGGATCTTCGAAATGCAGTTGGTCCCAATATTGAAATTCTGAAACAAATTGGAGTGCCGGATTCAAATATTTTAAAATATCTTCAGTACCAGCCTAGAGTGTTCATGACAAATTCCATCCAATTCAAGGAGACTGTAGAGAGAGTTAAGGAAATGGGATTCAACACTCAACAATGGCAGTTTGTTGATGCTGTTTTTTGTCTGCGATCAATGACCAAATCTACATGGGATAAAAAGGTTGAAGCTTATAGGAAATGGGGATTGTCTGAAGAAGAGATCCGTTCAGCTTTTAGAAAGCATCCACGGTGTATGACATTTTCTGAGGATAAGATTAATGGTGCAATGGATTTTTTTATCAATAAAATGGAATACGAATCATCTTTCGCTGCTAGAAGACCAATTTTACTTCAACTTAGTTTGAAGAAGAGGCTTTTGCCTAGAGGCCATGTTTATGAAGTTTTGCTGTCAAAGGGTTTGATTAAAAAGCACCAGAATCTTCCTTTCTTGTTGAAGTCTCCTGAAAAGCATTTCATAGAAAAATACATCAACCCGCATAAGGAGCAGATTCCTGGGCTGTTGGAGTT

Protein sequence

MSNLFRRILLLRSPSSVFAHGKAVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDPWVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVPDSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSLKKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLEX

Homology

[Close]

BLAST of Cucsa.253370 vs. TrEMBL
Match: F6HDG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01640 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.9e-73
Identity = 145/294 (49.32%), Postives = 200/294 (68.03%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V+    +HGFS+SQIS + +  P +L+ +P+K LLPKL FF SK  S  ++ +I+ S P
Sbjct: 82  SVLAFFNSHGFSKSQISKIVKSLPRLLASDPDKTLLPKLQFFYSKGASRPDVAKIVVSTP 141

Query: 83  WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 142
            +L  SL  +IIP+F++ +  L S+E  +  IK+F+RIL  DL   V  NI  L++ GVP
Sbjct: 142 GILYRSLENQIIPSFNFFKDFLQSDEMAITVIKRFSRILLFDLHTYVASNINALQEFGVP 201

Query: 143 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 202
            SNI   L  +P  FM     F+E +E VK+MGFN  Q +FV A+  +R+M KSTW++K+
Sbjct: 202 KSNIAGLLMNRPMAFMVRPNLFRENLEEVKKMGFNPSQMKFVIAIHAMRAMGKSTWERKI 261

Query: 203 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 262
           +AY++WG SEEEIR AF K PRCMT SEDKI   MDFF+NKM  ESS  ARRP+L+ LSL
Sbjct: 262 DAYKRWGWSEEEIRLAFIKLPRCMTHSEDKIMATMDFFVNKMGRESSLIARRPLLIPLSL 321

Query: 263 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           +KR++PR  V +VLLSKGLIK   +L  L +S EK F+ K++N  KE+ P L++
Sbjct: 322 EKRIIPRYSVIQVLLSKGLIKNDTSLVVLFESTEKMFLRKFVNGFKEEAPQLMK 375

[Close]

BLAST of Cucsa.253370 vs. TrEMBL
Match: F6HDG2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01630 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.5e-70
Identity = 138/294 (46.94%), Postives = 198/294 (67.35%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V+    +HGFS+SQ S + +  P +L+ +P+K LLPKL FF SK  S  ++ +I+ S P
Sbjct: 88  SVLAFFNSHGFSKSQTSKIVKSLPRLLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTP 147

Query: 83  WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 142
            +L  SL  +IIP+F++L+  L S+E  +  +K+F+RIL  DL   V  N+  L++ GVP
Sbjct: 148 GILKRSLENQIIPSFNFLKDFLQSDEMAITVVKRFSRILLFDLHTYVASNMNALQEFGVP 207

Query: 143 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 202
            SNI   L Y+P  FM N   F++ +E VK+MGFN  Q +FV A+  +R+  +S W++K+
Sbjct: 208 KSNIAGLLMYRPMAFMVNPNLFRKNLEEVKKMGFNPSQMKFVLAIQAMRAGGESCWERKI 267

Query: 203 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 262
           + Y+KWG SEEEIR AF K P CM +SEDKI   MDFF+NKM  ESS  A RP L+ LSL
Sbjct: 268 DIYKKWGWSEEEIRLAFTKSPWCMIYSEDKIMAKMDFFVNKMGRESSLIAHRPFLIGLSL 327

Query: 263 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           +KR++PR  V +VLLSKGLI K  +L  L +S EK F+E+++N +KE+ P L++
Sbjct: 328 EKRIIPRYSVVQVLLSKGLINKDISLVVLFESTEKTFLERFVNAYKEEAPQLIK 381

[Close]

BLAST of Cucsa.253370 vs. TrEMBL
Match: F6HDG2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01630 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.2e-65
Identity = 133/293 (45.39%), Postives = 192/293 (65.53%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V+ L  +HGFS++Q S + ++ P +L  +P+K LLPKL FF SK  S  +I +I+   P
Sbjct: 469 SVLALFNSHGFSKTQTSKIVKKEPQLLLSDPDKTLLPKLQFFYSKGASWPDIAKIVVCSP 528

Query: 83  WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 142
            +L  SL  +IIP+F++ +  L S++  +  +K+F+RIL  DL   V  N+  L++ GVP
Sbjct: 529 SILKRSLENQIIPSFNFFKDFLQSDKMAITVVKRFSRILLFDLHTYVASNMNALQEFGVP 588

Query: 143 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 202
            SNI   L  QP  FM     F+E +E VK+MG N  Q +FV A+  +R+  KS+W++K+
Sbjct: 589 KSNIAGLLMNQPMAFMVRPNLFRENLEEVKKMGSNPSQMKFVIAIQAIRAGGKSSWERKI 648

Query: 203 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 262
           + Y++WG SEEEIR AF K P CM +SEDKI   MDFF+NKM  ESS  ARRP L+  SL
Sbjct: 649 DIYKRWGWSEEEIRLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSSIARRPQLISPSL 708

Query: 263 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLL 316
           +KR++PR  V +VLLSKGLI K  +L  + +S E  F+ K+++ +KE+ P LL
Sbjct: 709 EKRIIPRYSVVQVLLSKGLISKDFSLSAVFQSTEIMFLHKFVDVYKEEAPQLL 761

HSP 2 Score: 270.4 bits (690), Expect = 2.8e-69
Identity = 143/302 (47.35%), Postives = 199/302 (65.89%), Query Frame = 1


Query: 14  PSSVFAHGKAVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSE 73
           P+SVFA          +HGFSESQ S +    P +L  +P+K+LL KL FF SK  S+ +
Sbjct: 79  PNSVFA-------FFNSHGFSESQTSKIVRSQPQLLVSDPDKSLLLKLHFFYSKGASNPD 138

Query: 74  IFEILRSDPWVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNI 133
           + +I+ S P +L  SL  +IIP+F++ +    SEE T+AT+K+F+R+L ++    V  NI
Sbjct: 139 VVKIIASCPVILKRSLENQIIPSFNFFKDFFQSEEMTMATVKRFSRVLIVNPHICVESNI 198

Query: 134 EILKQIGVPDSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSM 193
             L++ GVP SNI   L  QPR FM     F+E +E VK+MGF+  + +F  AV  +  M
Sbjct: 199 NALQESGVPKSNIAALLSLQPRAFMVRPNHFREILEEVKKMGFDPSKTRFPTAVQAMTGM 258

Query: 194 TKSTWDKKVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAAR 253
           +KSTW++K++AY++WG SEE+I  AF K P CM +SEDKI   MDFF+NKM  ESS  A 
Sbjct: 259 SKSTWERKIDAYKRWGWSEEDIWLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSLIAN 318

Query: 254 RPILLQLSLKKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPG 313
           RP L+ LSL+KR++PR  V +VLLSKGLI K  +L  L +S EK F+EK++N +KE+ P 
Sbjct: 319 RPFLIGLSLEKRIIPRYSVVQVLLSKGLIDKDISLVVLFESTEKMFLEKFVNGYKEEAPQ 373

Query: 314 LL 316
           LL
Sbjct: 379 LL 373

[Close]

BLAST of Cucsa.253370 vs. TrEMBL
Match: A5C3Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017397 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.0e-68
Identity = 132/294 (44.90%), Postives = 196/294 (66.67%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V+    +HGFS++Q S + +  P +L  +P+K LLPKL FF SK  S  ++ +I+ S P
Sbjct: 85  SVLAFFNSHGFSKTQTSKIVKTEPQLLLSDPDKTLLPKLQFFYSKGTSKPDVAKIVASSP 144

Query: 83  WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 142
            ++  SL  ++IP++++ +  L S++  +  +K+F+RIL  D+   V  N+  L++ GVP
Sbjct: 145 AIMRRSLENQVIPSYNFFKDFLQSDKMAITVVKRFSRILLFDIHTYVASNMNALQEFGVP 204

Query: 143 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 202
            SNI   L+ QP  FM     F+E +E VK+MGFN  Q +FV AV  +R+  KS+W++K+
Sbjct: 205 KSNIAGLLRNQPMAFMVRPNLFRENLEEVKKMGFNPSQMKFVIAVQAIRAGGKSSWERKI 264

Query: 203 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 262
           + Y+ WG SEEEIR AF K P CM +SEDKI   MDFF+NKM  ESS  ARRP+L+  SL
Sbjct: 265 DIYKSWGWSEEEIRLAFTKSPWCMIYSEDKIMTTMDFFVNKMGRESSLIARRPVLISHSL 324

Query: 263 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           +KR++PR  V +VLLSKGLI K  +LP + +S EK F+ K++N +KE+ P L++
Sbjct: 325 EKRIIPRYSVVQVLLSKGLIDKDFSLPTVFQSTEKMFLHKFVNVYKEEAPQLMK 378

[Close]

BLAST of Cucsa.253370 vs. TrEMBL
Match: A5C3X9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017396 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.2e-65
Identity = 133/293 (45.39%), Postives = 191/293 (65.19%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V+ L  +HGFS++Q S + ++ P +L  +P+K LLPKL FF SK  S  +I +I+   P
Sbjct: 88  SVLALFNSHGFSKTQTSKIXKKEPQLLLSDPDKTLLPKLQFFYSKGASWPDIAKIVVCSP 147

Query: 83  WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 142
            +L  SL  +IIP+F++ +  L S++  +  +K+F+RIL  DL   V  N+  L++ GVP
Sbjct: 148 SILKRSLENQIIPSFNFFKDXLQSDKMAITVVKRFSRILLFDLHTYVASNMNALQEFGVP 207

Query: 143 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 202
            SNI   L  QP  FM     F+E +E VK MGFN  Q +FV A+  +R+  K +W++K+
Sbjct: 208 KSNIAGLLMNQPMAFMVRPNLFRENLEEVKXMGFNPSQMKFVIAIQAIRAGGKXSWERKI 267

Query: 203 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 262
           + Y++WG SEEEIR AF K P CM +SEDKI   MDFF+NKM  ESS  ARRP L+  SL
Sbjct: 268 DIYKRWGWSEEEIRLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSSIARRPQLISPSL 327

Query: 263 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLL 316
           +KR++PR  V +VLLSKGLI K  +L  + +S E  F+ K+++ +KE+ P LL
Sbjct: 328 EKRIIPRYSVVQVLLSKGLINKDFSLSAVFQSTEIMFLHKFVDVYKEEAPQLL 380

[Close]

BLAST of Cucsa.253370 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 219.5 bits (558), Expect = 2.9e-57
Identity = 123/310 (39.68%), Postives = 188/310 (60.65%), Query Frame = 1


Query: 7   RILLLRSPSSVFAHGKAVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQS 66
           R LLL SP         V++LL +HGF+ +QIS L ++ P +L  N E  LLPKL FF S
Sbjct: 91  RKLLLDSPE----RPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLS 150

Query: 67  KAHSSSEIFEILRSDPWVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLR 126
              S S +   L SDP +L+ SL  ++IP++++L++VL S+EK +A +++   +   D  
Sbjct: 151 IGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHT 210

Query: 127 NAVGPNIEILKQIGVPDSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDA 186
             + PNI  + + GVP+  I   L + P   M  + +F+   ++ +EMGFN Q+  FV A
Sbjct: 211 KNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLA 270

Query: 187 VFCLRSM-TKSTWDKKVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKME 246
           +  L     KS WDK  E Y++WG SE++I  AF+KHP CM  SE KIN  M++F+N+M 
Sbjct: 271 IHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMN 330

Query: 247 YESSFAARRPILLQLSLKKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYIN 306
                 A+ P++L  SL+KR++PR  V +VL+S GL+K+  +L  LL   EK F+EK + 
Sbjct: 331 MAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVI 390

Query: 307 PHKEQIPGLL 316
            ++E++P L+
Sbjct: 391 KYEEELPELM 396

[Close]

BLAST of Cucsa.253370 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-48
Identity = 99/313 (31.63%), Postives = 184/313 (58.79%), Query Frame = 1


Query: 5   FRRILLLRSPSSVFAHGKAVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFF 64
           F +++  + P SV A       L  +HGF+  QI+ + + +P +LS +PE  + PKL+FF
Sbjct: 79  FVKLVSSKKPDSVLA-------LFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFF 138

Query: 65  QSKAHSSSEIFEILRSDPWVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLD 124
            S   S+S+  +++ S P +LS SL+KR+IP +D L+++L  EE  +  +K+  R   L 
Sbjct: 139 SSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESVVKCLKRGIRCFSLK 198

Query: 125 LRNAVGPNIEILKQIGVPDSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFV 184
           + + V   + I +++GVPD +I   +Q  P  F +   +F E + RV   GF+ ++  FV
Sbjct: 199 ITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFV 258

Query: 185 DAVFCLRSMTKSTWDKKVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKM 244
            A+      ++S  ++K + ++ +G S+E+  +A  + P C+T S++KI   +++ +N +
Sbjct: 259 HAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNI 318

Query: 245 EYESSFAARRPILLQLSLKKRLLPRGHVYEVLLSKGLIKKHQ-NLPFLLKSPEKHFIEKY 304
             ++     RP++L LS++KR+ PR  V  +LLSKGL+KK   N   +LK     F++K+
Sbjct: 319 GLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKF 378

Query: 305 INPHKEQIPGLLE 317
           +  +++++P L++
Sbjct: 379 VLKYQDEMPQLVQ 384

[Close]

BLAST of Cucsa.253370 vs. TAIR10
Match: AT5G64950.1 (AT5G64950.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-37
Identity = 89/289 (30.80%), Postives = 160/289 (55.36%), Query Frame = 1


Query: 22  KAVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSD 81
           ++VI +L ++ FS++QI      +P ++ +N EK L PKL FF+    + S + + +  +
Sbjct: 72  RSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQN 131

Query: 82  PWVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFAR--ILGLDLRNAVGPNIEILKQI 141
             V+  SL K++IP  + L++++  + + L  I       +L  D    + PNI  L+  
Sbjct: 132 SSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETC 191

Query: 142 GVPDSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWD 201
           G+  S +   L+ QPR+F  +  + +  V R  ++GF       V AV  L S+++ T+D
Sbjct: 192 GIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFD 251

Query: 202 KKVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQ 261
           +KV+ +   G SE+EI    R+ P  +  SEDK+    +F++ +M  E    A+RP +L 
Sbjct: 252 RKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLS 311

Query: 262 LSLKKRLLPRGHVYEVLLSKGLI----KKHQNLPFLLKSPEKHFIEKYI 305
            +L+KR++PR  V ++L  KGL+    KK +N+  +++  E+ F+EKY+
Sbjct: 312 YNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYV 360

[Close]

BLAST of Cucsa.253370 vs. TAIR10
Match: AT3G46950.1 (AT3G46950.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-26
Identity = 68/213 (31.92%), Postives = 126/213 (59.15%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V++LL ++GF +SQIS +   YP +L  + EK+L PKL F +S+  SSSE+ EI+ + P
Sbjct: 86  SVLNLLRSNGFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVP 145

Query: 83  WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 142
            +L     + +   +D+++ ++   +    +  +  +  G  +R     NI +L+++GVP
Sbjct: 146 TILDKKGEESVSLYYDFVKDIMQDGKSLCISCPEGKK--GNRIR-----NISVLRELGVP 205

Query: 143 DSNILKYL--QYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDK 202
              +   L  +YQP   +    +F+E++++V +MGF+  + +FV+A+  +  M++ T ++
Sbjct: 206 QKLLFSLLISRYQP---VCGKEKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEE 265

Query: 203 KVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKI 234
           KV  Y++ G SE EI + F+K P  + FSE KI
Sbjct: 266 KVNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKI 288

HSP 2 Score: 65.1 bits (157), Expect = 9.0e-11
Identity = 40/186 (21.51%), Postives = 89/186 (47.85%), Query Frame = 1


Query: 133 IEILKQIGVPDSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFV--DAVFCL 192
           + + K++G  ++ I    +  P     +  +     E +K+ G   ++   V      C+
Sbjct: 257 VNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCI 316

Query: 193 RSMTKSTWDKKVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSF 252
           RS  +   D  +E +   G S ++ +   +++P C  +S + +    +  +  M +    
Sbjct: 317 RSSEQKILDS-IEMFLGLGFSRDDFKMMVKRYPCCTAYSGETLRKKFEVLVKMMNWPLEA 376

Query: 253 AARRPILLQLSLKKRLLPRGHVYEVLLSKGLI-KKHQNLPFLLKSPEKHFIEKYINPHKE 312
               P +L  SL+KR++PR +V + L+SKGLI  ++  +  +L   ++ F+++Y+  H +
Sbjct: 377 VVMIPTVLGYSLEKRIVPRSNVIKALMSKGLIGSENPPISSVLVCTDQEFLKRYVMKHDK 436

Query: 313 QIPGLL 316
            +P L+
Sbjct: 437 LVPKLM 441

[Close]

BLAST of Cucsa.253370 vs. TAIR10
Match: AT1G61970.1 (AT1G61970.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-25
Identity = 73/221 (33.03%), Postives = 126/221 (57.01%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V++LL +HGF+ SQIS +   YP +L  + EK+L PKL F QS+  SSSEI EI+ S P
Sbjct: 86  SVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVP 145

Query: 83  WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 142
            +L    +K I   +D+++  L   EK+    K    +   +L N +  N+ +L+++G+P
Sbjct: 146 EILGKKGHKTISVYYDFIKDTL--LEKSSKNEKLCHSLPQGNLENKI-RNVSVLRELGMP 205

Query: 143 DSNILKYL--QYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDK 202
              +   L    QP   +    +F+ET+++V EMGF+    +FV+A+  +  M + T ++
Sbjct: 206 HKLLFSLLISDSQP---VCGKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEE 265

Query: 203 KVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFI 242
           KV  Y+  G    ++ S+F+K P  +  SE K+  +++ F+
Sbjct: 266 KVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFL 300

HSP 2 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 87/321 (27.10%), Postives = 148/321 (46.11%), Query Frame = 1


Query: 23  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 82
           +V++LL +HGF+ SQIS +   YP +L  + EK+L PKL F QS+  SSSEI EI+ S P
Sbjct: 86  SVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVP 145

Query: 83  WVLSNSLNKRIIPAFDYLQAVL----------------GSEEKTLATI----------KQ 142
            +L    +K I   +D+++  L                G+ E  +  +          K 
Sbjct: 146 EILGKKGHKTISVYYDFIKDTLLEKSSKNEKLCHSLPQGNLENKIRNVSVLRELGMPHKL 205

Query: 143 FARILGLDLRNAVGPNI--EILKQIGVP--DSNILKYLQYQPRVFMTNSIQFKETVERVK 202
              +L  D +   G     E LK++     D    K+++    ++  N    +E V   K
Sbjct: 206 LFSLLISDSQPVCGKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYK 265

Query: 203 EMGFNTQQ-WQ-FVDAVFCLRSMTKSTWDKKVEAYRKWGLSEEEIRSAFRKHPRCMTFSE 262
            +GF+    W  F      LR   K   D  +E +   G S +E     +  P C+  S 
Sbjct: 266 SLGFDVGDVWSSFKKWPISLRVSEKKMLDS-IETFLGLGFSRDEFAKMVKHFPPCIGLST 325

Query: 263 DKINGAMDFFINKMEYESSFAARRPILLQLSLKKRLLPRGHVYEVLLSKGLIKKH-QNLP 311
           + +    +F + KM +        P +   SL+KR++PRG+V + L+SKGL++    ++ 
Sbjct: 326 ETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSIS 385

[Close]

BLAST of Cucsa.253370 vs. NCBI nr
Match: gi|778678829|ref|XP_011651043.1| (PREDICTED: uncharacterized protein LOC101221507 isoform X1 [Cucumis sativus])

HSP 1 Score: 609.0 bits (1569), Expect = 4.7e-171
Identity = 315/354 (88.98%), Postives = 315/354 (88.98%), Query Frame = 1


Query: 1   MSNLFRRILLLRSPSSVFAH--------------------------------------GK 60
           MSNLFRRILLLRSPSSVFAH                                      GK
Sbjct: 1   MSNLFRRILLLRSPSSVFAHGFSESSLRSLRYLSTSSEIVSSPKSASLPSNAVQLNNKGK 60

Query: 61  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 120
           AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSK HSSSEIFEILRSDP
Sbjct: 61  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKDHSSSEIFEILRSDP 120

Query: 121 WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 180
           WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP
Sbjct: 121 WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 180

Query: 181 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 240
           DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV
Sbjct: 181 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 240

Query: 241 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 300
           EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL
Sbjct: 241 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 300

Query: 301 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE
Sbjct: 301 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 354

[Close]

BLAST of Cucsa.253370 vs. NCBI nr
Match: gi|778678862|ref|XP_011651051.1| (PREDICTED: uncharacterized protein LOC105434842 isoform X1 [Cucumis sativus])

HSP 1 Score: 543.9 bits (1400), Expect = 1.9e-151
Identity = 282/348 (81.03%), Postives = 291/348 (83.62%), Query Frame = 1


Query: 1   MSNLFRRILLLRSPSSVFAHG--------------------------------KAVIDLL 60
           MSN FRR+LLLRSPSSV +HG                                KA IDLL
Sbjct: 1   MSNFFRRLLLLRSPSSVSSHGFSATCLSTSSEIVSSPKSASLPSNAVQLNNKGKAAIDLL 60

Query: 61  ANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDPWVLSNS 120
           ANHGFSESQISYLA RYPPILS NPEK LLPKLLFFQSKAHSSSEIFEILRSDPWVLS S
Sbjct: 61  ANHGFSESQISYLANRYPPILSSNPEKTLLPKLLFFQSKAHSSSEIFEILRSDPWVLSKS 120

Query: 121 LNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVPDSNILK 180
           LN+RIIPAF+YLQAVLGSEEKTLATIK    IL  DLR  +GPNIEILKQIGVPDSNILK
Sbjct: 121 LNERIIPAFNYLQAVLGSEEKTLATIKHSVSILSKDLRICLGPNIEILKQIGVPDSNILK 180

Query: 181 YLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKVEAYRKW 240
           YLQYQPRVF+TNSIQFKETVERVKE+GFNTQQ  FVDAVFCLRSMTKSTWDKKVE YRKW
Sbjct: 181 YLQYQPRVFLTNSIQFKETVERVKEIGFNTQQLHFVDAVFCLRSMTKSTWDKKVEVYRKW 240

Query: 241 GLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSLKKRLLP 300
           GLSEEEIR AFRKHPRCMTFS DKIN AMDF +NKMEYESSF A RPILLQLSLKKRLLP
Sbjct: 241 GLSEEEIRVAFRKHPRCMTFSVDKINNAMDFLVNKMEYESSFLAERPILLQLSLKKRLLP 300

Query: 301 RGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           RGHVYEVLLSKGLIKKHQNLPF+LKSPEKHFIEK INPHKEQIPGLLE
Sbjct: 301 RGHVYEVLLSKGLIKKHQNLPFMLKSPEKHFIEKIINPHKEQIPGLLE 348

[Close]

BLAST of Cucsa.253370 vs. NCBI nr
Match: gi|778678824|ref|XP_004134480.2| (PREDICTED: uncharacterized protein LOC101209260 [Cucumis sativus])

HSP 1 Score: 472.6 bits (1215), Expect = 5.3e-130
Identity = 252/354 (71.19%), Postives = 274/354 (77.40%), Query Frame = 1


Query: 1   MSNLFRRILLLRSPSSVFAHG--------------------------------------K 60
           MS  FR +LLLRSPSSVF+HG                                      K
Sbjct: 1   MSIFFRTLLLLRSPSSVFSHGFSESPLKSLTYLSTSSEIVSSPESASLASNAVQLENNGK 60

Query: 61  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 120
           AVI LLANH FS+SQISYLA RYP ILS NPEK LLPKLLFFQSK  SS EIFE++RSDP
Sbjct: 61  AVIALLANHVFSQSQISYLANRYPQILSANPEKTLLPKLLFFQSKGLSSPEIFELVRSDP 120

Query: 121 WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 180
           WVL  S+NKRIIPAFDY+QAVLGSEEKTLATIKQFA IL  DLR +VGPNIEILKQIGVP
Sbjct: 121 WVLGASINKRIIPAFDYIQAVLGSEEKTLATIKQFAGILSKDLRISVGPNIEILKQIGVP 180

Query: 181 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 240
           DS+ILKY  YQPRVF+TNSI+FKETVERV EMGFN QQ QFV AVF LRSMTKSTWDKKV
Sbjct: 181 DSSILKYFPYQPRVFLTNSIRFKETVERVAEMGFNPQQTQFVVAVFALRSMTKSTWDKKV 240

Query: 241 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 300
           E  RKWGLSEE+IR AFR++P CM  SEDKINGAMDFF+NKM  ESSFAARRP+LL  SL
Sbjct: 241 EILRKWGLSEEDIRLAFRRNPWCMRVSEDKINGAMDFFVNKMGCESSFAARRPVLLSFSL 300

Query: 301 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           KKR+LPRG+VY+VLLSKGLIKK++NL    +SPEK FIEKYINP KEQIP LLE
Sbjct: 301 KKRILPRGYVYQVLLSKGLIKKNENLGLFFESPEKRFIEKYINPRKEQIPELLE 354

[Close]

BLAST of Cucsa.253370 vs. NCBI nr
Match: gi|778688495|ref|XP_011652762.1| (PREDICTED: uncharacterized protein LOC101208771 [Cucumis sativus])

HSP 1 Score: 457.2 bits (1175), Expect = 2.3e-125
Identity = 244/354 (68.93%), Postives = 264/354 (74.58%), Query Frame = 1


Query: 1   MSNLFRRILLLRSPSSVFAHG--------------------------------------K 60
           MSN FRRILLLRSPSSVF+HG                                      K
Sbjct: 1   MSNFFRRILLLRSPSSVFSHGFSEIPLKSLRYFSTSSEIVSSPKSASLPSHAAKLENNRK 60

Query: 61  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 120
           AVI LLANHGFS+SQIS + +RYP ILS NPEK LLPKL FFQSK  SS EI + LRS+P
Sbjct: 61  AVIALLANHGFSQSQISDVVKRYPGILSANPEKTLLPKLSFFQSKGFSSPEIVKFLRSNP 120

Query: 121 WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 180
           W L  SLNKRIIPAFDY+QAV GSEEKTLA IKQF  IL  DLR +VGPNIEILKQIGVP
Sbjct: 121 WSLRASLNKRIIPAFDYIQAVFGSEEKTLAVIKQFVGILVKDLRISVGPNIEILKQIGVP 180

Query: 181 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 240
           DSNIL+YLQYQPRVF+ N I FKETVERV EMGFN QQ QFV AVF LRSMTKSTWDKKV
Sbjct: 181 DSNILRYLQYQPRVFLKNPILFKETVERVVEMGFNPQQLQFVVAVFALRSMTKSTWDKKV 240

Query: 241 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 300
             YRKWG SEEEIR +FRKHP CM  SEDKING MDFF+NKM + SS AARRP+LL LSL
Sbjct: 241 AVYRKWGFSEEEIRLSFRKHPWCMMRSEDKINGVMDFFVNKMGFNSSVAARRPVLLSLSL 300

Query: 301 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           KKR+ PRG+VY+VL+SKGLIKKH N     +SPE  FIEK+INPHKEQIPGLLE
Sbjct: 301 KKRIFPRGYVYQVLVSKGLIKKHHNPLLFFESPENCFIEKFINPHKEQIPGLLE 354

[Close]

BLAST of Cucsa.253370 vs. NCBI nr
Match: gi|778688495|ref|XP_011652762.1| (PREDICTED: uncharacterized protein LOC101208771 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 4.1e-90
Identity = 195/320 (60.94%), Postives = 223/320 (69.69%), Query Frame = 1


Query: 1   MSNLFRRILLLRSPSSVFAHGKAVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPK 60
           MSNL RRILLLRSPSSVF+HG           FSES +  L        S + E    PK
Sbjct: 389 MSNLLRRILLLRSPSSVFSHG-----------FSESPLKSLT-----YFSVSSEIVSSPK 448

Query: 61  LLFFQSKA----HSSSEIFEILRSDPWVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQ 120
                S A    ++  ++  +L +  +              DY        EKTLA IK+
Sbjct: 449 SASLASNAVRLENNRKDVIALLANHGFS-------------DY--------EKTLAVIKR 508

Query: 121 FARILGLDLRNAVGPNIEILKQIGVPDSNILKYLQYQPRVFMTNSIQFKETVERVKEMGF 180
            A IL  D + +VGPNIEILKQIGVPDSNILKYL YQPRVF+TNSI+FKETVERV EMGF
Sbjct: 509 SADILFWDFQISVGPNIEILKQIGVPDSNILKYLHYQPRVFLTNSIRFKETVERVTEMGF 568

Query: 181 NTQQWQFVDAVFCLRSMTKSTWDKKVEAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGA 240
           N +   FV AVF LRSMTKSTWDKKVE YR WGLSEEEI  AFR++P CM  SEDKINGA
Sbjct: 569 NPRGLLFVIAVFALRSMTKSTWDKKVEVYRNWGLSEEEIHLAFRRNPWCMIASEDKINGA 628

Query: 241 MDFFINKMEYESSFAARRPILLQLSLKKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPE 300
           MDF++NKM  +SSFAARRP+LLQLSLKKR+LPRG+VY+VLLSKGLIKK +N+  L +SPE
Sbjct: 629 MDFYVNKMGCDSSFAARRPVLLQLSLKKRILPRGYVYQVLLSKGLIKKTENICLLFESPE 671

Query: 301 KHFIEKYINPHKEQIPGLLE 317
           K FIEKYINPHKEQIPGLLE
Sbjct: 689 KRFIEKYINPHKEQIPGLLE 671

HSP 2 Score: 453.8 bits (1166), Expect = 2.6e-124
Identity = 242/354 (68.36%), Postives = 267/354 (75.42%), Query Frame = 1


Query: 1   MSNLFRRILLLRSPSSVFAHG--------------------------------------K 60
           MSNLFRRILLLRSPSS F+HG                                      K
Sbjct: 1   MSNLFRRILLLRSPSSAFSHGFSECPLKFLRYLSTSSEIVSSPKSASLASNAVQLKNNPK 60

Query: 61  AVIDLLANHGFSESQISYLAERYPPILSFNPEKNLLPKLLFFQSKAHSSSEIFEILRSDP 120
           A++ LLANHGFSESQIS + +R   IL  NPEK L PKLLFFQSK  SS EI +++ S P
Sbjct: 61  ALVALLANHGFSESQISDITKRQSKILCLNPEKILSPKLLFFQSKGLSSPEIVKLVCSIP 120

Query: 121 WVLSNSLNKRIIPAFDYLQAVLGSEEKTLATIKQFARILGLDLRNAVGPNIEILKQIGVP 180
            VL+ SLNKRIIP FDYLQAV GSEEKTL TIK+FA IL  DLR +VGPNIEILKQIGVP
Sbjct: 121 CVLTGSLNKRIIPNFDYLQAVFGSEEKTLITIKRFAGILAWDLRISVGPNIEILKQIGVP 180

Query: 181 DSNILKYLQYQPRVFMTNSIQFKETVERVKEMGFNTQQWQFVDAVFCLRSMTKSTWDKKV 240
           DSNI KYLQYQPRVF+ N ++FKE VERVKEMGFN QQ QFV AVF LR+MTKSTWDKKV
Sbjct: 181 DSNIFKYLQYQPRVFLINPVRFKEAVERVKEMGFNPQQLQFVVAVFILRAMTKSTWDKKV 240

Query: 241 EAYRKWGLSEEEIRSAFRKHPRCMTFSEDKINGAMDFFINKMEYESSFAARRPILLQLSL 300
           E YRKWGLSEEEIR AFRK P CM FSEDKING MDFF+NK+  ESSFAARRPILL LSL
Sbjct: 241 EVYRKWGLSEEEIRIAFRKSPLCMAFSEDKINGVMDFFVNKLGCESSFAARRPILLSLSL 300

Query: 301 KKRLLPRGHVYEVLLSKGLIKKHQNLPFLLKSPEKHFIEKYINPHKEQIPGLLE 317
           KKR+LPRG++Y+VLLSKGLIKKH+NL +  +SPEK FIEK+INPH EQI GLLE
Sbjct: 301 KKRILPRGYIYQVLLSKGLIKKHENLAWFFESPEKRFIEKFINPHTEQISGLLE 354

The following BLAST results are available for this feature:

BLAST of Cucsa.253370 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HDG3_VITVI	1.9e-73	49.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01640 PE=4 SV=...	[more]
F6HDG2_VITVI	1.5e-70	46.94	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01630 PE=4 SV=...	[more]
F6HDG2_VITVI	4.2e-65	45.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01630 PE=4 SV=...	[more]
A5C3Y0_VITVI	4.0e-68	44.90	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017397 PE=4 SV=1	[more]
A5C3X9_VITVI	4.2e-65	45.39	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017396 PE=4 SV=1	[more]

BLAST of Cucsa.253370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07900.1	2.9e-57	39.68	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	1.4e-48	31.63	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	1.5e-37	30.80	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	4.4e-26	31.92	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	3.8e-25	33.03	Mitochondrial transcription termination factor family protein	[more]

BLAST of Cucsa.253370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778678829\|ref\|XP_011651043.1\|	4.7e-171	88.98	PREDICTED: uncharacterized protein LOC101221507 isoform X1 [Cucumis sativus]	[more]
gi\|778678862\|ref\|XP_011651051.1\|	1.9e-151	81.03	PREDICTED: uncharacterized protein LOC105434842 isoform X1 [Cucumis sativus]	[more]
gi\|778678824\|ref\|XP_004134480.2\|	5.3e-130	71.19	PREDICTED: uncharacterized protein LOC101209260 [Cucumis sativus]	[more]
gi\|778688495\|ref\|XP_011652762.1\|	2.3e-125	68.93	PREDICTED: uncharacterized protein LOC101208771 [Cucumis sativus]	[more]
gi\|778688495\|ref\|XP_011652762.1\|	4.1e-90	60.94	PREDICTED: uncharacterized protein LOC101208771 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.253370.1	Cucsa.253370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 192..299 score: 8.0E-14coord: 25..180 score: 4.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 216..247 score: 0.26coord: 39..71 score: 29.0coord: 248..282 score: 32.0coord: 111..142 score: 7.5coord: 147..177 score: 190.0coord: 75..107 score: 0
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 23..316 score: 4.6E
None	No IPR available	PANTHER	PTHR13068:SF28	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN-RELATED	coord: 23..316 score: 4.6E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.253370	Cucurbita pepo (Zucchini)	cgycpeB0669
Cucsa.253370	Cucurbita pepo (Zucchini)	cgycpeB0671
Cucsa.253370	Cucurbita pepo (Zucchini)	cgycpeB0678
Cucsa.253370	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.253370	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.253370	Bottle gourd (USVL1VR-Ls)	cgylsiB412
Cucsa.253370	Bottle gourd (USVL1VR-Ls)	cgylsiB420
Cucsa.253370	Melon (DHL92) v3.6.1	cgymedB425
Cucsa.253370	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.253370	Silver-seed gourd	carcgyB0083
Cucsa.253370	Silver-seed gourd	carcgyB0133
Cucsa.253370	Silver-seed gourd	carcgyB0383
Cucsa.253370	Silver-seed gourd	carcgyB0681
Cucsa.253370	Silver-seed gourd	carcgyB0960
Cucsa.253370	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.253370	Cucumber (Chinese Long) v3	cgycucB397
Cucsa.253370	Watermelon (97103) v2	cgywmbB452
Cucsa.253370	Watermelon (97103) v2	cgywmbB453
Cucsa.253370	Wax gourd	cgywgoB505
Cucsa.253370	Wax gourd	cgywgoB522
Cucsa.253370	Cucumber (Gy14) v1	cgycgyB108
Cucsa.253370	Cucurbita maxima (Rimu)	cgycmaB0713
Cucsa.253370	Cucurbita maxima (Rimu)	cgycmaB0714
Cucsa.253370	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.253370	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.253370	Cucurbita maxima (Rimu)	cgycmaB0731
Cucsa.253370	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.253370	Cucurbita moschata (Rifu)	cgycmoB0707
Cucsa.253370	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.253370	Cucurbita moschata (Rifu)	cgycmoB0720
Cucsa.253370	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.253370	Wild cucumber (PI 183967)	cgycpiB392
Cucsa.253370	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.253370	Cucumber (Chinese Long) v2	cgycuB373
Cucsa.253370	Melon (DHL92) v3.5.1	cgymeB430
Cucsa.253370	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.253370	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.253370	Watermelon (Charleston Gray)	cgywcgB453
Cucsa.253370	Watermelon (97103) v1	cgywmB479
Cucsa.253370	Watermelon (97103) v1	cgywmB483