Cucsa.253210 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.253210
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02229 : 1908178 .. 1908368 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAAGCCTCTTCTTCATACTAAGTGAAACTAAGATTGGTCTTGTAGCAGCGAAAGATGATTTGCATCCCATTTTGTTGACAAAAAAATCCATTGCACCATTAATCTTATCCTCAGAACCCATCATACACCATGGATGCCTTCTAAAAGCAGAACAGATCTGTTCTTCAGACAATCCCCATTTCCTATAA

mRNA sequence

GCAAAAGCCTCTTCTTCATACTAAGTGAAACTAAGATTGGTCTTGTAGCAGCGAAAGATGATTTGCATCCCATTTTGTTGACAAAAAAATCCATTGCACCATTAATCTTATCCTCAGAACCCATCATACACCATGGATGCCTTCTAAAAGCAGAACAGATCTGTTCTTCAGACAATCCCCATTTCCTATAA

Coding sequence (CDS)

GCAAAAGCCTCTTCTTCATACTAAGTGAAACTAAGATTGGTCTTGTAGCAGCGAAAGATGATTTGCATCCCATTTTGTTGACAAAAAAATCCATTGCACCATTAATCTTATCCTCAGAACCCATCATACACCATGGATGCCTTCTAAAAGCAGAACAGATCTGTTCTTCAGACAATCCCCATTTCCTATAA

Protein sequence

KSLFFILSETKIGLVAAKDDLHPILLTKKSIAPLILSSEPIIHHGCLLKAEQICSSDNPHFL*
Homology
[Close]
BLAST of Cucsa.253210 vs. TrEMBL
Match: D7T6G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01620 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-06
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 1 

Query: 3  LFFILSETKIGLVAAKDDLHPILLTKKSIAPLILSSEPIIHHGCLLKAEQICSSDNPHFL 62
          LF  L E   G  A K+D  PILLTKKSI  +ILSSE IIH G  +KA +I SSD P  L
Sbjct: 19 LFSKLCEISTGRRAIKEDSLPILLTKKSIVVIILSSEYIIHQGDFVKANRISSSDQPQLL 78

[Close]
BLAST of Cucsa.253210 vs. NCBI nr
Match: gi|297736888|emb|CBI26089.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-06
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 1 

Query: 3  LFFILSETKIGLVAAKDDLHPILLTKKSIAPLILSSEPIIHHGCLLKAEQICSSDNPHFL 62
          LF  L E   G  A K+D  PILLTKKSI  +ILSSE IIH G  +KA +I SSD P  L
Sbjct: 19 LFSKLCEISTGRRAIKEDSLPILLTKKSIVVIILSSEYIIHQGDFVKANRISSSDQPQLL 78

The following BLAST results are available for this feature:
BLAST of Cucsa.253210 vs. TrEMBL
Match NameE-valueIdentityDescription
D7T6G8_VITVI2.5e-0656.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01620 PE=4 SV=... [more]
BLAST of Cucsa.253210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297736888|emb|CBI26089.3|3.6e-0656.67unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.253210.1Cucsa.253210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.253210Silver-seed gourdcarcgyB0083
Cucsa.253210Silver-seed gourdcarcgyB0133
Cucsa.253210Silver-seed gourdcarcgyB0681
Cucsa.253210Silver-seed gourdcarcgyB0788
Cucsa.253210Silver-seed gourdcarcgyB0960
Cucsa.253210Cucumber (Chinese Long) v3cgycucB387
Cucsa.253210Cucumber (Chinese Long) v3cgycucB397
Cucsa.253210Watermelon (97103) v2cgywmbB452
Cucsa.253210Watermelon (97103) v2cgywmbB453
Cucsa.253210Wax gourdcgywgoB505
Cucsa.253210Wax gourdcgywgoB522
Cucsa.253210Cucumber (Gy14) v1cgycgyB108
Cucsa.253210Cucurbita maxima (Rimu)cgycmaB0713
Cucsa.253210Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.253210Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.253210Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.253210Cucurbita maxima (Rimu)cgycmaB0731
Cucsa.253210Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.253210Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.253210Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.253210Cucurbita moschata (Rifu)cgycmoB0720
Cucsa.253210Wild cucumber (PI 183967)cgycpiB383
Cucsa.253210Wild cucumber (PI 183967)cgycpiB392
Cucsa.253210Cucumber (Chinese Long) v2cgycuB366
Cucsa.253210Cucumber (Chinese Long) v2cgycuB373
Cucsa.253210Melon (DHL92) v3.5.1cgymeB430
Cucsa.253210Melon (DHL92) v3.5.1cgymeB439
Cucsa.253210Watermelon (Charleston Gray)cgywcgB451
Cucsa.253210Watermelon (Charleston Gray)cgywcgB453
Cucsa.253210Watermelon (97103) v1cgywmB479
Cucsa.253210Watermelon (97103) v1cgywmB483
Cucsa.253210Cucurbita pepo (Zucchini)cgycpeB0669
Cucsa.253210Cucurbita pepo (Zucchini)cgycpeB0671
Cucsa.253210Cucurbita pepo (Zucchini)cgycpeB0678
Cucsa.253210Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.253210Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.253210Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.253210Bottle gourd (USVL1VR-Ls)cgylsiB420
Cucsa.253210Melon (DHL92) v3.6.1cgymedB425
Cucsa.253210Melon (DHL92) v3.6.1cgymedB432