Cucsa.252460 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.252460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPrefoldin subunit 3
Locationscaffold02229 : 1383305 .. 1383860 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGGGTTTTTTCCCCAATCGGCAATGGCCTCCGAATCGTCTTCTTCTTCCGGCGCCGTCGTCACTGACAGAAGAGGGATCCCGGCGGCTCAGTTCGTGGAGGATGTTCGTACCTATCTCTCTCAATTACAACTCGATGTTCAATCCGCCCTTGCTTTTCTTCAAGAGCGGTACTCTCCTCTTTTTCTTTCGACTTGATTCAAATCTCGTAATGGCGGTGTACTTGGCGTCTGCTCGAGGCTTTTGCATCTGTATTTCTCTTTCTATAACATGCAGTGATTTCTGGCATGTATTGATGTGTTTTTTTTATTATTGCTCTAATGGTACTTTGAAGTCATTTTCTAAGTTGTAGGTTGCAAATGGGAATTAAGGTATTTAGGAGTTGACATATGTGTTAGTGAGCTTGAACTTTTTGATTATCGTTACAGCTTTACTTCCATGGAGCTTTACGATTTTCTAGTGGCTGAGATTGTATTGGAGTTTCTAGAATCTCTTCATTTGTTGTTTTCTTGAAGTTTATTGTTGTTGCTGTCGACTGGGTTCAGGCTACGTAA

mRNA sequence

GTTTTGGGTTTTTTCCCCAATCGGCAATGGCCTCCGAATCGTCTTCTTCTTCCGGCGCCGTCGTCACTGACAGAAGAGGGATCCCGGCGGCTCAGTTCGTGGAGGATGTTCGTACCTATCTCTCTCAATTACAACTCGATGTTCAATCCGCCCTTGCTTTTCTTCAAGAGCGTGATTTCTGGCATTTTATTGTTGTTGCTGTCGACTGGGTTCAGGCTACGTAA

Coding sequence (CDS)

GTTTTGGGTTTTTTCCCCAATCGGCAATGGCCTCCGAATCGTCTTCTTCTTCCGGCGCCGTCGTCACTGACAGAAGAGGGATCCCGGCGGCTCAGTTCGTGGAGGATGTTCGTACCTATCTCTCTCAATTACAACTCGATGTTCAATCCGCCCTTGCTTTTCTTCAAGAGCGTGATTTCTGGCATTTTATTGTTGTTGCTGTCGACTGGGTTCAGGCTACGTAA

Protein sequence

FGFFPQSAMASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQERDFWHFIVVAVDWVQAT*
Homology
[Close]
BLAST of Cucsa.252460 vs. Swiss-Prot
Match: PFD3_ARATH (Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          M+S S S SG+ +T+RRGIPAA+F++DV TYLSQ  LD  SALAF QER
Sbjct: 1  MSSSSPSGSGSDLTERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQER 49

[Close]
BLAST of Cucsa.252460 vs. TrEMBL
Match: A0A0A0L5Y0_CUCSA (Prefoldin subunit 3 OS=Cucumis sativus GN=Csa_3G168400 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-16
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER
Sbjct: 1  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 49

[Close]
BLAST of Cucsa.252460 vs. TrEMBL
Match: I3SQ31_LOTJA (Prefoldin subunit 3 OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MA+ SSSSSG+ VT+RRGIPAAQFVEDV+TYL+QL LDV S LAFLQER
Sbjct: 1  MAASSSSSSGSAVTERRGIPAAQFVEDVQTYLTQLGLDVNSTLAFLQER 49

[Close]
BLAST of Cucsa.252460 vs. TrEMBL
Match: M5XLY0_PRUPE (Prefoldin subunit 3 OS=Prunus persica GN=PRUPE_ppa011958mg PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-10
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MA+ SSSSS  +VT+RRGIP AQFVEDV+TYL+Q  LDV SAL+FLQER
Sbjct: 1  MATASSSSSSGMVTERRGIPGAQFVEDVQTYLTQAGLDVNSALSFLQER 49

[Close]
BLAST of Cucsa.252460 vs. TrEMBL
Match: G7IMS6_MEDTR (Prefoldin subunit 3 OS=Medicago truncatula GN=MTR_2g033830 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-10
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 13 SSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          SSSSS + VT+RRGIP AQFVEDV+TYL+QL LDV SALAFLQER
Sbjct: 3  SSSSSSSAVTERRGIPGAQFVEDVQTYLTQLGLDVNSALAFLQER 47

[Close]
BLAST of Cucsa.252460 vs. TrEMBL
Match: A0A061EPK0_THECC (Prefoldin subunit 3 OS=Theobroma cacao GN=TCM_021398 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.9e-10
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1 

Query: 9  MASESSSSSGAVV-TDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MA+ESSSSS + V T+RRGIP AQFVEDV TYLSQ  LDV SALAFLQER
Sbjct: 1  MAAESSSSSSSEVKTERRGIPGAQFVEDVETYLSQAGLDVNSALAFLQER 50

[Close]
BLAST of Cucsa.252460 vs. TAIR10
Match: AT5G49510.1 (AT5G49510.1 prefoldin 3)

HSP 1 Score: 63.5 bits (153), Expect = 6.1e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          M+S S S SG+ +T+RRGIPAA+F++DV TYLSQ  LD  SALAF QER
Sbjct: 1  MSSSSPSGSGSDLTERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQER 49

[Close]
BLAST of Cucsa.252460 vs. NCBI nr
Match: gi|449432928|ref|XP_004134250.1| (PREDICTED: probable prefoldin subunit 3 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER
Sbjct: 1  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 49

[Close]
BLAST of Cucsa.252460 vs. NCBI nr
Match: gi|694393332|ref|XP_009372110.1| (PREDICTED: probable prefoldin subunit 3 [Pyrus x bretschneideri])

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-12
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MA+ESSSSS A VT+RRGIP AQFVEDV+TYL+QL LDV SALAFLQER
Sbjct: 1  MATESSSSSSAAVTERRGIPGAQFVEDVQTYLTQLGLDVNSALAFLQER 49

[Close]
BLAST of Cucsa.252460 vs. NCBI nr
Match: gi|388508614|gb|AFK42373.1| (unknown [Lotus japonicus])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MA+ SSSSSG+ VT+RRGIPAAQFVEDV+TYL+QL LDV S LAFLQER
Sbjct: 1  MAASSSSSSGSAVTERRGIPAAQFVEDVQTYLTQLGLDVNSTLAFLQER 49

[Close]
BLAST of Cucsa.252460 vs. NCBI nr
Match: gi|657996128|ref|XP_008390426.1| (PREDICTED: probable prefoldin subunit 3 [Malus domestica])

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MA+ES SSS A VT+RRGIP AQFVEDV+TYL+QL LDV SALAFLQER
Sbjct: 1  MATESPSSSSAAVTERRGIPGAQFVEDVQTYLTQLGLDVNSALAFLQER 49

[Close]
BLAST of Cucsa.252460 vs. NCBI nr
Match: gi|658010711|ref|XP_008340591.1| (PREDICTED: probable prefoldin subunit 3 [Malus domestica])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-11
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1 

Query: 9  MASESSSSSGAVVTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQER 58
          MA+ SSSSS A VT+RRGIP AQFVEDV+TYL+QL LDV SALAFLQER
Sbjct: 1  MATASSSSSSAAVTERRGIPGAQFVEDVQTYLTQLGLDVNSALAFLQER 49

The following BLAST results are available for this feature:
BLAST of Cucsa.252460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PFD3_ARATH1.1e-0965.31Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=1 SV=1[more]
BLAST of Cucsa.252460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5Y0_CUCSA1.1e-16100.00Prefoldin subunit 3 OS=Cucumis sativus GN=Csa_3G168400 PE=3 SV=1[more]
I3SQ31_LOTJA8.1e-1279.59Prefoldin subunit 3 OS=Lotus japonicus PE=2 SV=1[more]
M5XLY0_PRUPE4.4e-1073.47Prefoldin subunit 3 OS=Prunus persica GN=PRUPE_ppa011958mg PE=3 SV=1[more]
G7IMS6_MEDTR5.8e-1080.00Prefoldin subunit 3 OS=Medicago truncatula GN=MTR_2g033830 PE=2 SV=1[more]
A0A061EPK0_THECC9.9e-1078.00Prefoldin subunit 3 OS=Theobroma cacao GN=TCM_021398 PE=3 SV=1[more]
BLAST of Cucsa.252460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49510.16.1e-1165.31 prefoldin 3[more]
BLAST of Cucsa.252460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432928|ref|XP_004134250.1|1.6e-16100.00PREDICTED: probable prefoldin subunit 3 [Cucumis sativus][more]
gi|694393332|ref|XP_009372110.1|6.8e-1281.63PREDICTED: probable prefoldin subunit 3 [Pyrus x bretschneideri][more]
gi|388508614|gb|AFK42373.1|1.2e-1179.59unknown [Lotus japonicus][more]
gi|657996128|ref|XP_008390426.1|2.6e-1179.59PREDICTED: probable prefoldin subunit 3 [Malus domestica][more]
gi|658010711|ref|XP_008340591.1|3.4e-1179.59PREDICTED: probable prefoldin subunit 3 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0005829 cytosol
cellular_component GO:0016272 prefoldin complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.252460.1Cucsa.252460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.252460Cla021805Watermelon (97103) v1cgywmB479
Cucsa.252460Csa3G168400Cucumber (Chinese Long) v2cgycuB366
Cucsa.252460MELO3C006723Melon (DHL92) v3.5.1cgymeB439
Cucsa.252460ClCG05G006650Watermelon (Charleston Gray)cgywcgB451
Cucsa.252460CSPI03G15080Wild cucumber (PI 183967)cgycpiB383
Cucsa.252460CmaCh14G015820Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.252460CmaCh06G015700Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.252460CmoCh14G016140Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.252460CmoCh06G015640Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.252460Lsi05G014120Bottle gourd (USVL1VR-Ls)cgylsiB416
Cucsa.252460Cp4.1LG03g11860Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.252460Cp4.1LG08g05300Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.252460MELO3C006723.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.252460CsaV3_3G015280Cucumber (Chinese Long) v3cgycucB387
Cucsa.252460Cla97C05G088260Watermelon (97103) v2cgywmbB452
Cucsa.252460Bhi01G000790Wax gourdcgywgoB522
Cucsa.252460Carg19613Silver-seed gourdcarcgyB0329
Cucsa.252460Carg25643Silver-seed gourdcarcgyB0833
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.252460Cucurbita pepo (Zucchini)cgycpeB0671
Cucsa.252460Cucurbita pepo (Zucchini)cgycpeB0678
Cucsa.252460Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.252460Melon (DHL92) v3.6.1cgymedB425
Cucsa.252460Silver-seed gourdcarcgyB0083
Cucsa.252460Silver-seed gourdcarcgyB0788
Cucsa.252460Watermelon (97103) v2cgywmbB453
Cucsa.252460Wax gourdcgywgoB512
Cucsa.252460Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.252460Cucurbita maxima (Rimu)cgycmaB0731
Cucsa.252460Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.252460Cucurbita moschata (Rifu)cgycmoB0720
Cucsa.252460Melon (DHL92) v3.5.1cgymeB430
Cucsa.252460Watermelon (Charleston Gray)cgywcgB453
Cucsa.252460Watermelon (97103) v1cgywmB483