Cucsa.252420 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.252420
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBnaC07g27250D protein
Locationscaffold02229 : 1344454 .. 1345009 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGACGGAGAGATGAGCCAGAGATGGTACGCCCCAAGTTTCCGGTGGCCGGAATTCGGTTTGTGGCTGCGGCCTGCGTCGTTCAGTTGGCCGGATTTCAGTTTCTCAAACTTCAGCATCGAGTGGAACTCTCCCAACATCAGGTGGTTTAATTTTTCAATTCTCGATGATCTCTTATGGACCTTCATCGCTCTTCTCGAATCCCTAGTTCTTCTTACAATGTTGTGCTGTTTCTTCTTGTGCTGTGGATTCACTCTCTGATTTTCTCAATTACCCATTTAGTATGTTGTATATATATATATATACATATGTATATTCCTTTTCATCGACTTCAAACTCTTAGCAATTAGTTACATATCCTCTGTAGTTTTACTGTTTTGCGTCAAGTGTAATTTGATGGTTTCGTTCTTCATCTTCATCGATTTATGGCCGGAATCCCTAATTAGAATTGGAAAGCCCCGGATAATTGAATCGATGTGAACAGCTGTGAAAGATTATAGGGGAATTCTTCAGTGTTATTGTTGTGAATGATTTCGTTGTGTTCTTATTCAATCAAA

mRNA sequence

TAGACGGAGAGATGAGCCAGAGATGGTACGCCCCAAGTTTCCGGTGGCCGGAATTCGGTTTGTGGCTGCGGCCTGCGTCGTTCAGTTGGCCGGATTTCAGTTTCTCAAACTTCAGCATCGAGTGGAACTCTCCCAACATCAGGTGGTTTAATTTTTCAATTCTCGATGATCTCTTATGGACCTTCATCGCTCTTCTCGAATCCCTAGTTCTTCTTACAATGTTGTGCTGTTTCTTCTTGTGCTGTGGATTCACTCTCTGATTTTCTCAATTACCCATTTAGTATGTTGtatatatatatatatacatatgtatatTCCTTTTCATCGACTTCAAACTCTTAGCAATTAGTTACATATCCTCTGTAGTTTTACTGTTTTGCGTCAAGTGTAATTTGATGGTTTCGTTCTTCATCTTCATCGATTTATGGCCGGAATCCCTAATTAGAATTGGAAAGCCCCGGATAATTGAATCGATGTGAACAGCTGTGAAAGATTATAGGGGAATTCTTCAGTGTTATTGTTGTGAATGATTTCGTTGTGTTCTTATTCAATCAAA

Coding sequence (CDS)

ATGAGCCAGAGATGGTACGCCCCAAGTTTCCGGTGGCCGGAATTCGGTTTGTGGCTGCGGCCTGCGTCGTTCAGTTGGCCGGATTTCAGTTTCTCAAACTTCAGCATCGAGTGGAACTCTCCCAACATCAGGTGGTTTAATTTTTCAATTCTCGATGATCTCTTATGGACCTTCATCGCTCTTCTCGAATCCCTAGTTCTTCTTACAATGTTGTGCTGTTTCTTCTTGTGCTGTGGATTCACTCTCTGA

Protein sequence

MSQRWYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIALLESLVLLTMLCCFFLCCGFTL*
Homology
[Close]
BLAST of Cucsa.252420 vs. TrEMBL
Match: W9SDS5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000043 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 4  RWYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIALLE 63
          RWY  +FRWPEF        F  P+  FS  +  W+S + RWF FSI+DD+LWT ++L+E
Sbjct: 5  RWYTSAFRWPEF-------DFRLPELDFSYLTSGWSSESFRWFGFSIVDDVLWTLVSLVE 64

Query: 64 SLVLLTMLCCFFLCCGFTL 83
          SL L  MLC FF+ CG TL
Sbjct: 65 SLALAAMLCFFFVFCGCTL 76

[Close]
BLAST of Cucsa.252420 vs. TrEMBL
Match: K7MB91_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G138300 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-15
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 5  WYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIALLES 64
          WY  SFRWPE  L +    F WP   FS  +  WN  ++  +N S++DD+LW  +  LES
Sbjct: 6  WYTSSFRWPELHLTVPWPVFRWPALDFSYLNPSWNVESVIQWNLSLVDDILWALVTGLES 65

Query: 65 LVLLTMLCCFFLCCGFTL 83
          + LL MLC FFLCCG TL
Sbjct: 66 IALLAMLCYFFLCCGCTL 83

[Close]
BLAST of Cucsa.252420 vs. TrEMBL
Match: B9HX48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15820g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-14
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 1  MSQRWYAPSFRWPEFGLWLRPASF-SWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFI 60
          M   WY   FRWPEFG  +  +S   WP+F FS F+      ++RW +F+ +DD+LWTF+
Sbjct: 1  MRPMWYPSIFRWPEFGFSMPSSSILRWPEFDFSYFTTRLTLESLRWLDFA-IDDVLWTFV 60

Query: 61 ALLESLVLLTMLCCFFLCCGFTL 83
            LES+ L  MLC FF+ CG TL
Sbjct: 61 TALESVALTAMLCYFFVFCGCTL 82

[Close]
BLAST of Cucsa.252420 vs. TrEMBL
Match: A0A0D2RS15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G080300 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.4e-14
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 

Query: 1  MSQRWYAPSFRWPEFGLWLRPAS---FSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWT 60
          MS  W  P FRWP  G + RP+    F WP+F+ S  +  W+  ++RW  FSI+DD+LWT
Sbjct: 1  MSSMWSTPVFRWPNLG-FPRPSPTPVFQWPEFNLSYLTSGWSLQSLRWVVFSIVDDVLWT 60

Query: 61 FIALLESLVLLTMLCCFFLCCGFT 82
           +   E L L+T LC FFL CG T
Sbjct: 61 LVTAFECLALVTTLCFFFLFCGCT 83

[Close]
BLAST of Cucsa.252420 vs. TrEMBL
Match: V4RXV1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006357mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.7e-14
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 1 

Query: 1  MSQRWYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIA 60
          M+ RWY  +FRWP+    LR + F  P+F+FS F+  W   ++ W +FSI DDLLW  + 
Sbjct: 1  MTTRWYTSAFRWPDLEFSLRSSFFRLPEFNFSYFTTGW---SLSWLDFSI-DDLLWKVVT 60

Query: 61 LLESLVLLTMLCCFFLCCGFTL 83
          + ES +L++MLC FFL CG TL
Sbjct: 61 VFESFLLVSMLCYFFLFCGCTL 78

[Close]
BLAST of Cucsa.252420 vs. TAIR10
Match: AT5G49525.1 (AT5G49525.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-10
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 23 SFSWPDFSFSNFSIEWNSPNIRWF-NFSILDDLLWTFIALLESLVLLTMLCCFFLCCGFT 82
          +F WP+ + S+ S  WN   +    + SI+DDLLW+F++++ESL +   +CCFFL CG T
Sbjct: 20 AFRWPEVNLSSLSSGWNMRLLSLSGDLSIVDDLLWSFVSIIESLAITATVCCFFLFCGCT 79

[Close]
BLAST of Cucsa.252420 vs. NCBI nr
Match: gi|659076986|ref|XP_008438970.1| (PREDICTED: uncharacterized protein LOC103483904 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-43
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 

Query: 1   MSQRWYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIA 60
           MSQRWYAPSFRWPEFGLWLR ASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIA
Sbjct: 24  MSQRWYAPSFRWPEFGLWLRSASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIA 83

Query: 61  LLESLVLLTMLCCFFLCCGFTL 83
           LLESLVLLTMLCCFFLCCGFTL
Sbjct: 84  LLESLVLLTMLCCFFLCCGFTL 105

[Close]
BLAST of Cucsa.252420 vs. NCBI nr
Match: gi|1000966314|ref|XP_015574700.1| (PREDICTED: uncharacterized protein LOC107261256 [Ricinus communis])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-17
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1  MSQRWYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNS-PNIRWFNFSILDDLLWTFI 60
          M  RWY+ +FRWP+FG  L  + F WP+F FS  +  WNS  ++ WF+F ++DD++WTF+
Sbjct: 1  MCPRWYSSAFRWPDFGFSLPASIFRWPEFDFSYLTAGWNSLQSLNWFDF-LIDDVVWTFV 60

Query: 61 ALLESLVLLTMLCCFFLCCGFTL 83
           +LES+ ++ MLC FFL CG TL
Sbjct: 61 TVLESVAVVAMLCYFFLFCGCTL 82

[Close]
BLAST of Cucsa.252420 vs. NCBI nr
Match: gi|720047483|ref|XP_010270831.1| (PREDICTED: uncharacterized protein LOC104607044 [Nelumbo nucifera])

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-17
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 1  MSQRWYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRW--FNFSILDDLLWTF 60
          M + W + +FRW +F   L PA F WP+F+FS F+  W   + RW  FNF+I+DD+LWTF
Sbjct: 1  MGRMWASSAFRWLDFDFSLSPAIFRWPEFNFSYFTPRWAFESFRWPDFNFTIVDDVLWTF 60

Query: 61 IALLESLVLLTMLCCFFLCCGFTL 83
          + + ESL L  MLC FF+ CG TL
Sbjct: 61 VTVFESLALAAMLCFFFVFCGCTL 84

[Close]
BLAST of Cucsa.252420 vs. NCBI nr
Match: gi|703153327|ref|XP_010110652.1| (hypothetical protein L484_004569 [Morus notabilis])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 4  RWYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIALLE 63
          RWY  +FRWPEF        F  P+  FS  +  W+S + RWF FSI+DD+LWT ++L+E
Sbjct: 5  RWYTSAFRWPEF-------DFRLPELDFSYLTSGWSSESFRWFGFSIVDDVLWTLVSLVE 64

Query: 64 SLVLLTMLCCFFLCCGFTL 83
          SL L  MLC FF+ CG TL
Sbjct: 65 SLALAAMLCFFFVFCGCTL 76

[Close]
BLAST of Cucsa.252420 vs. NCBI nr
Match: gi|947062644|gb|KRH11905.1| (hypothetical protein GLYMA_15G138300 [Glycine max])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 5  WYAPSFRWPEFGLWLRPASFSWPDFSFSNFSIEWNSPNIRWFNFSILDDLLWTFIALLES 64
          WY  SFRWPE  L +    F WP   FS  +  WN  ++  +N S++DD+LW  +  LES
Sbjct: 6  WYTSSFRWPELHLTVPWPVFRWPALDFSYLNPSWNVESVIQWNLSLVDDILWALVTGLES 65

Query: 65 LVLLTMLCCFFLCCGFTL 83
          + LL MLC FFLCCG TL
Sbjct: 66 IALLAMLCYFFLCCGCTL 83

The following BLAST results are available for this feature:
BLAST of Cucsa.252420 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SDS5_9ROSA1.4e-1550.63Uncharacterized protein OS=Morus notabilis GN=L484_000043 PE=4 SV=1[more]
K7MB91_SOYBN8.8e-1548.72Uncharacterized protein OS=Glycine max GN=GLYMA_15G138300 PE=4 SV=1[more]
B9HX48_POPTR4.3e-1446.99Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15820g PE=4 SV=1[more]
A0A0D2RS15_GOSRA7.4e-1446.43Uncharacterized protein OS=Gossypium raimondii GN=B456_006G080300 PE=4 SV=1[more]
V4RXV1_9ROSI9.7e-1447.56Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006357mg PE=4 SV=1[more]
BLAST of Cucsa.252420 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49525.11.2e-1044.26 unknown protein[more]
BLAST of Cucsa.252420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076986|ref|XP_008438970.1|2.9e-4398.78PREDICTED: uncharacterized protein LOC103483904 [Cucumis melo][more]
gi|1000966314|ref|XP_015574700.1|2.1e-1749.40PREDICTED: uncharacterized protein LOC107261256 [Ricinus communis][more]
gi|720047483|ref|XP_010270831.1|4.6e-1750.00PREDICTED: uncharacterized protein LOC104607044 [Nelumbo nucifera][more]
gi|703153327|ref|XP_010110652.1|1.9e-1550.63hypothetical protein L484_004569 [Morus notabilis][more]
gi|947062644|gb|KRH11905.1|1.3e-1448.72hypothetical protein GLYMA_15G138300 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.252420.1Cucsa.252420.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33726FAMILY NOT NAMEDcoord: 17..82
score: 1.8
NoneNo IPR availablePANTHERPTHR33726:SF1SUBFAMILY NOT NAMEDcoord: 17..82
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.252420Melon (DHL92) v3.6.1cgymedB425
Cucsa.252420Melon (DHL92) v3.6.1cgymedB432
Cucsa.252420Silver-seed gourdcarcgyB0083
Cucsa.252420Silver-seed gourdcarcgyB0329
Cucsa.252420Silver-seed gourdcarcgyB0833
Cucsa.252420Cucumber (Chinese Long) v3cgycucB387
Cucsa.252420Watermelon (97103) v2cgywmbB452
Cucsa.252420Watermelon (97103) v2cgywmbB453
Cucsa.252420Wax gourdcgywgoB512
Cucsa.252420Wax gourdcgywgoB522
Cucsa.252420Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.252420Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.252420Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.252420Cucurbita maxima (Rimu)cgycmaB0731
Cucsa.252420Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.252420Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.252420Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.252420Cucurbita moschata (Rifu)cgycmoB0720
Cucsa.252420Wild cucumber (PI 183967)cgycpiB383
Cucsa.252420Cucumber (Chinese Long) v2cgycuB366
Cucsa.252420Melon (DHL92) v3.5.1cgymeB430
Cucsa.252420Melon (DHL92) v3.5.1cgymeB439
Cucsa.252420Watermelon (Charleston Gray)cgywcgB451
Cucsa.252420Watermelon (Charleston Gray)cgywcgB453
Cucsa.252420Watermelon (97103) v1cgywmB479
Cucsa.252420Watermelon (97103) v1cgywmB483
Cucsa.252420Cucurbita pepo (Zucchini)cgycpeB0671
Cucsa.252420Cucurbita pepo (Zucchini)cgycpeB0678
Cucsa.252420Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.252420Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.252420Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.252420Bottle gourd (USVL1VR-Ls)cgylsiB416