Cucsa.252330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.252330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Membrane-anchored ubiquitin-fold protein
Location	scaffold02229 : 1252532 .. 1252651 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGACGAAGATTTGATTGAGCTTAAGTTCCGACTTTATGATGGATTAGATATTGGTCCATTTTGTTATTCCCCAACTTCAACTATAGTCATGGTTAAGGAGAGGGTTGTTGCATAA

mRNA sequence

ATGCCAGACGAAGATTTGATTGAGCTTAAGTTCCGACTTTATGATGGATTAGATATTGGTCCATTTTGTTATTCCCCAACTTCAACTATAGTCATGGTTAAGGAGAGGGTTGTTGCATAA

Coding sequence (CDS)

ATGCCAGACGAAGATTTGATTGAGCTTAAGTTCCGACTTTATGATGGATTAGATATTGGTCCATTTTGTTATTCCCCAACTTCAACTATAGTCATGGTTAAGGAGAGGGTTGTTGCATAA

Protein sequence

MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA*

Homology

[Close]

BLAST of Cucsa.252330 vs. Swiss-Prot
Match: MUB4_ARATH (Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-11
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDL+ELKFRLYDG D+GPF YSPT+T+ M+KER+V+
Sbjct: 1  MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVS 39

[Close]

BLAST of Cucsa.252330 vs. Swiss-Prot
Match: MUB3_ARATH (Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-07
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+E+ I++KFRLYDG DIGPF YS  ST+  +K+RVV+
Sbjct: 1  MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVS 39

[Close]

BLAST of Cucsa.252330 vs. Swiss-Prot
Match: MUB5_ARATH (Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.0e-06
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          M DEDLIELKFRL DG DIGP  YS   T+  +KE+++A
Sbjct: 1  MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIA 39

[Close]

BLAST of Cucsa.252330 vs. TrEMBL
Match: A0A0A0L887_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G563280 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.8e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MPDEDLIELKFRLYDG DIGPF YSPTSTI MVKER+VA
Sbjct: 1  MPDEDLIELKFRLYDGSDIGPFRYSPTSTIAMVKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. TrEMBL
Match: A0A059APN7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01624 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-10
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDL+ELKFRLYDG DIGPF YSPTST+ M+KER+VA
Sbjct: 1  MPEEDLVELKFRLYDGSDIGPFQYSPTSTVAMLKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. TrEMBL
Match: M1BSQ1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020203 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.1e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDLIELKFRLYDG DIGPF YSPTSTI ++KER+VA
Sbjct: 1  MPEEDLIELKFRLYDGSDIGPFQYSPTSTIAILKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. TrEMBL
Match: M1BSQ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020203 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.1e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDLIELKFRLYDG DIGPF YSPTSTI ++KER+VA
Sbjct: 1  MPEEDLIELKFRLYDGSDIGPFQYSPTSTIAILKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. TrEMBL
Match: A0A0V0HJW8_SOLCH (Putative membrane-anchored ubiquitin-fold protein 4-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.1e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDLIELKFRLYDG DIGPF YSPTSTI ++KER+VA
Sbjct: 1  MPEEDLIELKFRLYDGSDIGPFQYSPTSTIAILKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. TAIR10
Match: AT3G26980.1 (AT3G26980.1 membrane-anchored ubiquitin-fold protein 4 precursor)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-12
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDL+ELKFRLYDG D+GPF YSPT+T+ M+KER+V+
Sbjct: 1  MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVS 39

[Close]

BLAST of Cucsa.252330 vs. TAIR10
Match: AT4G24990.1 (AT4G24990.1 Ubiquitin family protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-08
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+E+ I++KFRLYDG DIGPF YS  ST+  +K+RVV+
Sbjct: 1  MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVS 39

[Close]

BLAST of Cucsa.252330 vs. TAIR10
Match: AT1G77870.1 (AT1G77870.1 membrane-anchored ubiquitin-fold protein 5 precursor)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-07
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          M DEDLIELKFRL DG DIGP  YS   T+  +KE+++A
Sbjct: 1  MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIA 39

[Close]

BLAST of Cucsa.252330 vs. NCBI nr
Match: gi|778681599|ref|XP_011651547.1| (PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MPDEDLIELKFRLYDG DIGPF YSPTSTI MVKER+VA
Sbjct: 1  MPDEDLIELKFRLYDGSDIGPFRYSPTSTIAMVKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. NCBI nr
Match: gi|659098435|ref|XP_008450137.1| (PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MPDEDLIELKFRLYDG DIGPF YSPTSTI MVKER+VA
Sbjct: 1  MPDEDLIELKFRLYDGSDIGPFRYSPTSTIAMVKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. NCBI nr
Match: gi|702464692|ref|XP_010028973.1| (PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Eucalyptus grandis])

HSP 1 Score: 70.5 bits (171), Expect = 7.7e-10
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDL+ELKFRLYDG DIGPF YSPTST+ M+KER+VA
Sbjct: 1  MPEEDLVELKFRLYDGSDIGPFQYSPTSTVAMLKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. NCBI nr
Match: gi|565343185|ref|XP_006338719.1| (PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Solanum tuberosum])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-09
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDLIELKFRLYDG DIGPF YSPTSTI ++KER+VA
Sbjct: 1  MPEEDLIELKFRLYDGSDIGPFQYSPTSTIAILKERIVA 39

[Close]

BLAST of Cucsa.252330 vs. NCBI nr
Match: gi|698517744|ref|XP_009803755.1| (PREDICTED: membrane-anchored ubiquitin-fold protein 4 isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-09
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1  MPDEDLIELKFRLYDGLDIGPFCYSPTSTIVMVKERVVA 40
          MP+EDLIELKFRLYDG DIGPF YSP STI M+KER+VA
Sbjct: 1  MPEEDLIELKFRLYDGSDIGPFRYSPASTIAMLKERIVA 39

The following BLAST results are available for this feature:

BLAST of Cucsa.252330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MUB4_ARATH	5.3e-11	71.79	Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 ...	[more]
MUB3_ARATH	2.1e-07	61.54	Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 ...	[more]
MUB5_ARATH	3.0e-06	61.54	Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 ...	[more]

BLAST of Cucsa.252330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L887_CUCSA	4.8e-11	89.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G563280 PE=4 SV=1	[more]
A0A059APN7_EUCGR	5.3e-10	79.49	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01624 PE=4 SV=1	[more]
M1BSQ1_SOLTU	9.1e-10	82.05	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020203 PE=4 SV=1	[more]
M1BSQ2_SOLTU	9.1e-10	82.05	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020203 PE=4 SV=1	[more]
A0A0V0HJW8_SOLCH	9.1e-10	82.05	Putative membrane-anchored ubiquitin-fold protein 4-like OS=Solanum chacoense PE...	[more]

BLAST of Cucsa.252330 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26980.1	3.0e-12	71.79	membrane-anchored ubiquitin-fold protein 4 precursor	[more]
AT4G24990.1	1.2e-08	61.54	Ubiquitin family protein	[more]
AT1G77870.1	1.7e-07	61.54	membrane-anchored ubiquitin-fold protein 5 precursor	[more]

BLAST of Cucsa.252330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778681599\|ref\|XP_011651547.1\|	6.9e-11	89.74	PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Cucumis sativus]	[more]
gi\|659098435\|ref\|XP_008450137.1\|	6.9e-11	89.74	PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Cucumis melo]	[more]
gi\|702464692\|ref\|XP_010028973.1\|	7.7e-10	79.49	PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Eucalyptus grandis]	[more]
gi\|565343185\|ref\|XP_006338719.1\|	1.3e-09	82.05	PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Solanum tuberosum]	[more]
gi\|698517744\|ref\|XP_009803755.1\|	1.7e-09	82.05	PREDICTED: membrane-anchored ubiquitin-fold protein 4 isoform X1 [Nicotiana sylv...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.252330.1	Cucsa.252330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..38 score: 8.
None	No IPR available	PANTHER	PTHR13169	UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN	coord: 1..39 score: 3.6
None	No IPR available	PANTHER	PTHR13169:SF1	SUBFAMILY NOT NAMED	coord: 1..39 score: 3.6
None	No IPR available	PFAM	PF13881	Rad60-SLD_2	coord: 5..39 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.252330	Watermelon (97103) v2	cgywmbB452
Cucsa.252330	Wax gourd	cgywgoB512
Cucsa.252330	Wax gourd	cgywgoB522
Cucsa.252330	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.252330	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.252330	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.252330	Cucurbita moschata (Rifu)	cgycmoB0707
Cucsa.252330	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.252330	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.252330	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.252330	Melon (DHL92) v3.5.1	cgymeB430
Cucsa.252330	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.252330	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.252330	Watermelon (Charleston Gray)	cgywcgB453
Cucsa.252330	Watermelon (97103) v1	cgywmB479
Cucsa.252330	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.252330	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.252330	Bottle gourd (USVL1VR-Ls)	cgylsiB416
Cucsa.252330	Melon (DHL92) v3.6.1	cgymedB425
Cucsa.252330	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.252330	Silver-seed gourd	carcgyB0329
Cucsa.252330	Silver-seed gourd	carcgyB0833
Cucsa.252330	Cucumber (Chinese Long) v3	cgycucB387