Cucsa.248430 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.248430
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptionureide permease 4
Locationscaffold02207 : 254512 .. 260435 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTACTAATGGTCTATGGTCTCTCTCCATTATGAAAAATTGAAATTCCACGTATAATGAGTAGGTGAGTAAGCAGGAGTGTCAACCACGAATCGCGGCTGAGGGATTCGCGGATATCTTCAGATCAGATCTGGGGTTCTTTACATCTGGCGTTTCAGATCTGGGATTCACGGATTCACGAAGATTTGAGGTTCGCGGGATTCTTTAGATCTGGGGTTTGCGGCTGGGTTGCGTTTTCACGACAGGGGTTCGCGGTAGGTTCACGTTTTCACGGCTGAATTTACTTCTTCGCGGTCGGCTGTGAGAACGTGATCAATTGTTACTTCTTCGCTAATGTGATCAAAGGGGTTCGACGGCTGGGTTTTCTTCTTCGCGAATAGCTGGGGTTCGCGGCAGGGAGGCGTCTTCAATGCTGAGTTGCAACACTAAAACACGACGCGTTGAACGGAGACGAAGATGAAGAGATGAAGATTTTCGTTGTCAATGATCTTCACGACAGAGATCTCGGCGGCGGCACTGGTGAGTTACAGTAAATCTAGGTCTTTTGCTCTGTTAACATGTGGGAAATATTCTAATATTTTATTAATGAATATTCTGTATTTTAGAAGCCAATCAATTGTTATGTAAATAGATAAATTACACAAATTAAATAAGAAATGTAATATAATTAACCTAAACTATAGAATTTATATTAATAGTTAGATTATGAGAAAATTATAAACACATAATGATATTGAGTTGATATGATAATTGTTTAATATAAAAAaTAATCATATTAAACTAAACAATAATAAACAAAATTAATCAATACTTGTATGTCCTCTTTTCCAATCTCACCATTATCTTCTTTCTCTCGTTTCTCTCGCTTTAGAGAGCCATATTCGTAGATTGTCATTGTTTACCCAAATAACGTTATCCACGCAATTTTATTCATATATCTTTACATTTTGTTTGATTTTTCAGCTTCCTTTCAATCTCTTTAGTCTTCAAATCTATAACCATAAAAAGATGGAGAAAACTAAATTTTAAAATCCAAATCATGATCATACCAAAGAAAAAAAATGCACTAAAAGATGACTACCATTTTTCATTTTTTGTATGTGAATTTATATTGTAATTCAATAAAATAGGAATTAATTATGATGAGTTATTACTCAATTAACCATGGCAAAAAAGCACTTAAATCAATGGTCTATGAGTTTTTAAAAATTAAAATGGCAATGGCTTATTATTAGTTAAGAATTTTTGAAGTTTTTTTtACGTGGATGGTTGTAACTTAAAAaTATTTTtAATGGTTGTTTTAAAAAaGGAATCAGCTCAGGTATAAATTTTGTAATATATAATATCTTGAACGTTGGATGTTATTAATTTTCTTTTTtCTTCTTCTTTTTCTTCCTTTTAATATCATATCTTTATCCTTAAACTACGATATACATTGATAGTAATTGGTTAACATGAACACTTCAAATATAATAGATTAATCTAAGATCACTCATCGTAAATTTACAAGTTTTCCTCTCTTTTGTCTTTTGTTCAAGTGCTAGTGGAGAGAGAGGTTTTTTGGTAAGTTTAGAGTCGAACAACAAACATTTCGAAATGCCTCGACTTTTCTAACCTTATGTGGTGACTATATCCAGTATATGGTTATGGACACGACGATGAAGTATAACGTAATATGAACTCAGCAATTAGGTGTGTTTATATAGGAATATTTAACCAATTAAATGTTAACACAAGCGAGATTAACATTTCAAGGTGATACAAAGCATTTATTAACTTCAAGGCAAGTAGCCATTAGGTGCTTTGGTCATACTTGCTCGTCTTTCGGAATCTAAATACTTGAAGTTAAGAAGATTTGTACACAATTTGTCTGTTTGAATCATAAGTAATCCATCCTTTATTAAGGCGGGCATCCTTTCGGTGCTCGACCACACACATTGTGCATTTATGTAATGTATGAAAAGGATAAATTCGACGACAAGATTGTATTGTAATGATCTCATAACCACTCAGTTAGCTAAAATAAGGTCATCACGCATCAAGTGATGACAATCAATACTTTGTCTGTTCTCTTGAATAAGACAAGGCATTGATGGCCACATTTAACTAAACAAGACTTATAATGCACTCAACTAGATTGTGAGATCCATTTCTAATTTGAGTAAGGAAGTAAATTCGGCTAAAGTATTAAGAAGTTGGCATTTGAATAAATCTGCAGAAAGGATTAAGCGATAAAATCTTTTATGGTTAAGTATACGTTTTTTGCAATTAAGTGGGTAGTTCACAAAAGAAGTTCATGTGCGATAAGAAGAGTCTTTGCATAAGTTAAGAAGTGAAAGTTTTGACAAAGTGTTAGACTAGATGTTTTGAGAGGACTTCGCGAGAAGAACCAAGTGTTTCGCGGAGAAGAAGTATGCGAGAAAGCCTTTGAGTTTAAGTTCGCGATAAGAGTTCTATGCGAGTAAAAGTTGGTTAGCTCGCGTGGTAGGTTTTCTTATAGTAAAACTATAACCATGTGATAAGGTTATTCGCAAGAAATGTTAAGTGGTTGAAGTTATTCACGGTATGGGTTAGGCGAGAAGCAAGGTTTGGAGTATAATACTCGTATTTCTACGAGTTATCAATTTTACTCACACTGAATTTGTGATATACACAATCTTCTACTATATTCGACTCAAAGCCAAAAGATGTAATTACTTCATGAAATTTATGATACCACTAACGACAGGCTTGTCTGAGACAATAGATGGATTTCTTCAATTTGCACACCATAAATTTTAAATTATTAGATATTAAGTTTTCTAGTAGTACTGTCACACCCTATCCCAAAAGACATCCTCAATATGCCCAACATGTGACATGAAGTCGATCGACATCATTCTTCTTCTAACGACATCTGTTGACTCTGATTGACTTGTAACCCTTATCTAGAGTTGGCTTTAGATTTGGCTACCTAAATTTAATTGATCAAATCTAAACGATTGTGTACTAAAAATAGTCAAATCTAAACAATCTTGTACACACAATCTTAAAAAAATCTTTTAGATTTGGCTACCCAAACTTAACTGATCAAATAACTATCGTGTACCAAAAATAGCCCAATCTAAATGCTTGTGTCACAAAGAACCTTGAAAAAATCATTTAGATTTGACTACCCAAATTTAAACGATAAAATCTAAATGTTCGTGTAGAAAAGTTAAAaAAAAAAaTAGTTTAGATTTGGCTAACCAAATTTAAATGATGAAGTCTAAACGATCGTGTACAAAAGAAGCCAAATCTAAACGATAATGTACCAAAGAATATTGAAAAAACTTGTTTAGATTTGGCTACCCAAAGTTAAACTATCAAATCTAAACGATCGTGTACCAATTCTTTTTAAAAAAAAaCGTTCTGATTTGTTTGCCCAAATTTAAACGAATAAATATAAACAATCTTGTACAAAAAATAGTCAAATCTAAACAATCGTATACAAAGAATCTTGAAAAAAAATCGTTTAGATTTGGGTAGCAAATTTAAATAATTGTTTACCAACTATGTTATGCACGCTGGATGTCAATTAATCACGAGACATTTTTGGTATTTTTCATTAGGGGCCTGTGGGTTTTTTCCATTTTCAAAATTGTTTTATACAGTGTAAATATTTTGTTGCTTTGTATATTTGTAAACCCTGAACCCTATTGAACTTGGATTTTCTCAAGAGTTTGAAAGGATTATTTTTAAGTAAAGTAAAGATGGGAAAGTAGACTTAAGAAGTGACTTGGTAAGCATGTTTTGATAGGTGAAAAGTAGACTTGAGAAGTGACTTGGTAAGCATGTCTTGATAGGTGGAAAGTAGGAAAATTAAGAAATAATGATTTAAAAGATAGGAAAATTAAGAGGTAATGGTTTAAAAGATAAGAAAAAGTTAAGTAGAAAAGAGGAAAATTTTGGTTAACTCCATGGCCTAGGCGTTTGGCCTTGGTGGACGGTCAAATGAAGAGCTAATAACCTCTAAAGAGGTTATTTGGGTGAGAAGAAAGCTTGCTAGGCGACAAGATTAATGTGGTGGTGTATGGCCAAGAGGGTTAAGATAACCACTAAATGTGTTGGCGAATTGGCTTTGTCAGGCGAGAAGACTTGTTTAAAGGTTAGGTATGCAATTGGGGTTTGTTGTTGGACAGCAAGACAACACAAAGAAGGCTATGCGAGAGGCTTAGAGGTTAATAGGCGAGAGGCACTAGGCAACCAAGGCTATGCGATGAGAGGTTAGCCAAGTCTATGCGATGAAGACTATAGAAGTTAGCTAGGCGTTTTGGCATGTCCTTGAAAATTTGGCATTTTTGTTAGGCAAGATGAGGAAAATGTGGACTCAGTTAAGTGGATTCCAGGTGTCATATACATGCATAGATTAAATTTCGGCGGTAGGAAGTGTCAATAAAGATTTATGCAAGCTTCAGTATAAATAGGTCGCTTCAGATGAATATTTCTCCCAAACCACTTGTGCGATTTTGCTGATATTAGCTTCAAATGATCACAGGTTGAGTCTATTCTTTATTTTAGGGTTGTTGGTTTAATTTGAAAGAAGGAAGATTGAATTTAAGTTGAAAGAAGAGAGAAAAATCATTCTCAAGAGAATCTCGAGTAGTGTTCACTTCAAAAAGCTATACAATTCATCACAAAGAGCTTTTGGCTACAATTTTGAGGTAAGAAAGCTACGACCAAAGAAGCACACAGTAAACCCTGTCCGCGAAGGCTGTGCGAGATGGCCTGTGTGAGGCATGCGCATGACAAACCTTTTGTGAGGTTAGCACATGGCAGACCTGCCCAGGCCATGCACGTGTGTGCCTGCGCTGTCGCCCACCCCATACACACCAGACATGTCAAATGGGTGTTTTtGGGCTACTTTTGGTATTTTTAGAATTGTTAAGTAGAGTTAAGATGTTTTCTTGATGAAAGGATATTAATTGGAATTATTTCCCATCATTTCAGACCAAGAAGAAATCACGCAAATCTGGCGTTTGAATTAATCAACAAAAAAAaTTAAGAGAAAATCTTTTATGGTTAAATATATGTTTCACAATTAAGAAAGTAACTCGCGAGGAAGTTTTGAGAAAAGAAGGATTTGCGATAGGACTTATAAGTCTAAACGCTCACGAGAGAAAGAGTATTCGCGATCGAAAAATGAGTTATTGCGTTAAGACCTTCGAAGTAAAATGATCATGGGTTTAGAATCATGAATTATGTTGATTTTTCTTAGCTTTGTTCTCGTTGGAACGCTGAGATTTCGTGATTCTTAGACTGTTTGATGATGGACGAATAACCTTCCCTGGAGTTGCTTGCTTCTTGAGTGCTGAATTTGTTGGCTTTATTGTTCACTCATCCAACATGGTCAATAACGAAGAAAATTTGAAAAGTTCTTCCGCTAATTTTGAAGAGCCAAAGTATGTTCTTGTTTAATATTTTCTAATGAATGTCCTATTTTGGAAGGCATTTTCTTGTTTAGTTGATGTAATGATGTTCATAATCACATAATTTTTCTGGATAGCCACTTGAATCCAATTTTATGATTTTGCTTATATGCAATTTGTGTCTTTAAAACTTTTTTTAACGCCACTGAATTCATGTTTTAATATTATGTTCTGTATTCATTTTTGACAAGGAAACCAAAATCTCTCTTATTTCAAACATGGGTAAATCTTCTAGAGCTATGATCTACTACTATCACTCCATTCATCCTTTGCCAAGTGATAGAACTGTTGAACTTTTTGGTTTTAAATTTTGACATGCACAGTCGAATCAACGAACCTGGAAAGTGCTGCTTACTCTTCACAAAAAGCAAAGGCTGGGACTGCTGACTTTCTTGTTCAGCTTGAAAATAGAAGATCCATCAAGGTCTATACTACAAACATCATTGCATACATTATGATAAGATCCACATTCCTCTAG

mRNA sequence

TGTACTAATGGTCTATGGTCTCTCTCCATTATGAAAAATTGAAATTCCACGTATAATGAGTAGGTGAGTAAGCAGGAGTGTCAACCACGAATCGCGGCTGAGGGATTCGCGGATATCTTCAGATCAGATCTGGGGTTCTTTACATCTGGCGTTTCAGATCTGGGATTCACGGATTCACGAAGATTTGAGGTTCGCGGGATTCTTTAGATCTGGGGTTTGCGGCTGGGTTGCGTTTTCACGACAGGGGTTCGCGGTAGGTTCACGTTTTCACGGCTGAATTTACTTCTTCGCGGTCGGCTGTGAGAACGTGATCAATTGTTACTTCTTCGCTAATGTGATCAAAGGGGTTCGACGGCTGGGTTTTCTTCTTCGCGAATAGCTGGGGTTCGCGGCAGGGAGGCGTCTTCAATGCTGAGTTGCAACACTAAAACACGACGCGTTGAACGGAGACGAAGATGAAGAGATGAAGATTTTCGTTGTCAATGATCTTCACGACAGAGATCTCGGCGGCGGCACTGTCGAATCAACGAACCTGGAAAGTGCTGCTTACTCTTCACAAAAAGCAAAGGCTGGGACTGCTGACTTTCTTGTTCAGCTTGAAAATAGAAGATCCATCAAGGTCTATACTACAAACATCATTGCATACATTATGATAAGATCCACATTCCTCTAG

Coding sequence (CDS)

ATGAAGATTTTCGTTGTCAATGATCTTCACGACAGAGATCTCGGCGGCGGCACTGTCGAATCAACGAACCTGGAAAGTGCTGCTTACTCTTCACAAAAAGCAAAGGCTGGGACTGCTGACTTTCTTGTTCAGCTTGAAAATAGAAGATCCATCAAGGTCTATACTACAAACATCATTGCATACATTATGATAAGATCCACATTCCTCTAG

Protein sequence

MKIFVVNDLHDRDLGGGTVESTNLESAAYSSQKAKAGTADFLVQLENRRSIKVYTTNIIAYIMIRSTFL*
Homology
[Close]
BLAST of Cucsa.248430 vs. TrEMBL
Match: A0A0A0KW59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606670 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 19  VESTNLESAAYSSQKAKAGTADFLVQLENRRSIKVY 55
           VESTNLESAAYSS+KAKAGTADFLVQLENRRSIKV+
Sbjct: 194 VESTNLESAAYSSRKAKAGTADFLVQLENRRSIKVF 229

[Close]
BLAST of Cucsa.248430 vs. TAIR10
Match: AT2G03520.1 (AT2G03520.1 ureide permease 4)

HSP 1 Score: 46.2 bits (108), Expect = 9.6e-06
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1 

Query: 19  VESTNLESAAYSSQKAKAGTADFLVQLENRRSIKVYTTNIIAYIMI 65
           +E T++ES    ++KAKAGTA F V+LEN+R+IKV+  +I+  + I
Sbjct: 193 IEKTDVESQEKLAEKAKAGTAGFYVELENKRAIKVFGKSIMIGLFI 238

[Close]
BLAST of Cucsa.248430 vs. NCBI nr
Match: gi|700196799|gb|KGN51976.1| (hypothetical protein Csa_5G606670 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.7e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1 

Query: 19  VESTNLESAAYSSQKAKAGTADFLVQLENRRSIKVY 55
           VESTNLESAAYSS+KAKAGTADFLVQLENRRSIKV+
Sbjct: 194 VESTNLESAAYSSRKAKAGTADFLVQLENRRSIKVF 229

The following BLAST results are available for this feature:
BLAST of Cucsa.248430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW59_CUCSA6.1e-0994.44Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606670 PE=4 SV=1[more]
BLAST of Cucsa.248430 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03520.19.6e-0647.83 ureide permease 4[more]
BLAST of Cucsa.248430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196799|gb|KGN51976.1|8.7e-0994.44hypothetical protein Csa_5G606670 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009834Ureide_permease
Vocabulary: Biological Process
TermDefinition
GO:0071705nitrogen compound transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071705 nitrogen compound transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.248430.1Cucsa.248430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009834Ureide permeasePFAMPF07168Ureide_permeasecoord: 21..63
score: 4.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.248430Cucumber (Chinese Long) v3cgycucB377
Cucsa.248430Watermelon (97103) v2cgywmbB437
Cucsa.248430Wax gourdcgywgoB496
Cucsa.248430Wild cucumber (PI 183967)cgycpiB371
Cucsa.248430Cucumber (Chinese Long) v2cgycuB355
Cucsa.248430Melon (DHL92) v3.5.1cgymeB419
Cucsa.248430Watermelon (Charleston Gray)cgywcgB435
Cucsa.248430Bottle gourd (USVL1VR-Ls)cgylsiB406
Cucsa.248430Melon (DHL92) v3.6.1cgymedB414