Cucsa.247750 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.247750
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold02205 : 29656 .. 29995 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTCGTTCTGCGTGCCTCATCTTCTCCACCCCACCCATCCTTCTTCAACATTCAAGCCCTAGCCTCCGCCCCTTTCACCGTGCACCTCCAGCCACCGCGAATCCCACAATTGACGCAGCCCCTGCACGACCACGATCGCCCGGACGAACCCTTCTCCACTTCGCATCTCCATCCATCAGCCGTAGCCGTAGCCGCATCGTTCTACCGTTCCAAAGCCATGCCGTTCAATTTCCTTCAGTCGTTCGTGCAGCGTGCTTCACCCGTGCCGAAGTTGATCGTGTGCATTTCCGTCAGCTTCGAGCCTCAGTCGCGTCTCCTAGGGTGAGCTGTCGTTGA

mRNA sequence

TCTCTCTCGTTCTGCGTGCCTCATCTTCTCCACCCCACCCATCCTTCTTCAACATTCAAGCCCTAGCCTCCGCCCCTTTCACCGTGCACCTCCAGCCACCGCGAATCCCACAATTGACGCAGCCCCTGCACGACCACGATCGCCCGGACGAACCCTTCTCCACTTCGCATCTCCATCCATCAGCCGTAGCCGTAGCCGCATCGTTCTACCGTTCCAAAGCCATGCCGTTCAATTTCCTTCAGTCGTTCGTGCAGCGTGCTTCACCCGTGCCGAAGTTGATCGTGTGCATTTCCGTCAGCTTCGAGCCTCAGTCGCGTCTCCTAGGGTGAGCTGTCGTTGA

Coding sequence (CDS)

TCTCTCTCGTTCTGCGTGCCTCATCTTCTCCACCCCACCCATCCTTCTTCAACATTCAAGCCCTAGCCTCCGCCCCTTTCACCGTGCACCTCCAGCCACCGCGAATCCCACAATTGACGCAGCCCCTGCACGACCACGATCGCCCGGACGAACCCTTCTCCACTTCGCATCTCCATCCATCAGCCGTAGCCGTAGCCGCATCGTTCTACCGTTCCAAAGCCATGCCGTTCAATTTCCTTCAGTCGTTCGTGCAGCGTGCTTCACCCGTGCCGAAGTTGATCGTGTGCATTTCCGTCAGCTTCGAGCCTCAGTCGCGTCTCCTAGGGTGAGCTGTCGTTGA

Protein sequence

LSRSACLIFSTPPILLQHSSPSLRPFHRAPPATANPTIDAAPARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQLRASVASPRVSCR*
Homology
[Close]
BLAST of Cucsa.247750 vs. TrEMBL
Match: A0A0A0K8E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G133920 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 41  APARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQL 100
           APARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQL
Sbjct: 12  APARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQL 71

Query: 101 RASVASPR 109
           RASVASPR
Sbjct: 72  RASVASPR 79

[Close]
BLAST of Cucsa.247750 vs. NCBI nr
Match: gi|700188813|gb|KGN44046.1| (hypothetical protein Csa_7G133920 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 41  APARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQL 100
           APARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQL
Sbjct: 12  APARPRSPGRTLLHFASPSISRSRSRIVLPFQSHAVQFPSVVRAACFTRAEVDRVHFRQL 71

Query: 101 RASVASPR 109
           RASVASPR
Sbjct: 72  RASVASPR 79

The following BLAST results are available for this feature:
BLAST of Cucsa.247750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8E1_CUCSA2.2e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G133920 PE=4 SV=1[more]
BLAST of Cucsa.247750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188813|gb|KGN44046.1|3.2e-29100.00hypothetical protein Csa_7G133920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.247750.1Cucsa.247750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.247750Csa7G133920Cucumber (Chinese Long) v2cgycuB354
Cucsa.247750CsaV3_7G011570Cucumber (Chinese Long) v3cgycucB376
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.247750Wild cucumber (PI 183967)cgycpiB370