Cucsa.244400 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.244400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transposon TX1 uncharacterized
Location	scaffold02135 : 222326 .. 223651 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCACGAGAGATTCCCTTTTGGAAGAACAACCAAAGGTATGCAACTGTTTAACAATTTTATCGATAAAGCTAACTGCTGGAAGTTCCCCTTTGTAATGGCAGGCACACTTGGTCTCGAGAAGGGGCTACCATCGCAAGATCATTCTGGGACATATTTTTCATAAATAAAGCATGGGATGATGAATTCGAAAACACAAGAGCCAATAGGAAAGCTCGTCTATTTTCTGACCAATTTCCCATTTTACCCAAGGCTGGCTCCATCAGCTGGGGACCCTCCCCTTTCAGATTTTGCAATAGCTGGTTACTTGACAAAGATTGCGGTTTAGTCATTGAAAGAGGATGGAACAGCAGTAGCTTAGAAGGTTGGGCTGGTTTTGTCCTTAATTCTAAACTGAGGATGGTTAAAAATGCAGTAAAAGCTTGGCTGGTCTACTTCCAGAAAAATAAGAAAAGAAGGGAAGAAGACCTGATTAAAGAAATAGAAAGTTTGGATGCTTTTGCCAATTTAACAAGTCTCTCAGATTCTAAATTAGCTTCCAGATCTTCAATGAAGGCAGAACTGATGTTCTTATACAGATTTAAGGAGATTAATTTAATTCAGAAAAGCAAGTTGAACTGGATGCAGTTGGGGGACGAAAATACGAGTTTTTTCCACAGATTGCATGCAGCTAAGAAAAGGAAGAATCTGATTACAGAGCTGGTTAATGAATTCAGGGTGCTTGCCAAATCTTTTAGAGAAATTGAAAGTCTGATTCTCGAATTTTATACTGAACTCTTCTCTAAAAGTCTGGGCCTGAGAAATATTCCTATAAATTTTGATTGGCCTTGTATAACTCCTCAAAATTTAATGCTTACAGTAAGGTTTTCTGAGTTTGAAATAAAAGCTGCTGTCAAGTCCCTTGGAAAATGCAAAGCCCATGGACTAGATGGCTTTATCACTGAATTCCTTATAAAATATTGGAATTTAGTTAAACCAAACTTGCTCTCTATTTTTGAGGAATTTCATCGAAACGGTAGGGTAGATTAAACGCTTCTGTGCAAGAGAATTTCATTTGCTTGATCCAGAAAAAAGAAAATGTGGTGGCTGTCAACGACCTCCAGCCAACTAGTCTCACAACCTTGCTTACAAGGTTATTGCCGAGAGACTTAAAAAGGTAATGTCTTATATCATTGCTCCTTCGCAAAACACATTTATAGAAGAAAGACACGTATTAGATCCCATCCTTGTTGCAAATGAAGTTTTTGAGGACTATCGGACCAAGAAGAAGCAAGGATGGTTCCTTAAGCTTGATATGGAAAAAGCTTTTGACCGAGTTGAACG

mRNA sequence

atgagctcacgagagattcccttttggaagaacaaccaaaggcacacttggtctcgagaaggggctaccatcgcaagatcattctgggacatatttttcataaataaagcatgggatgatgaattcgaaaacacaagagccaataggaaagctcgtctattttctgaccaatttcccattttacccaaggctggctccatcagctggggaccctcccctttcagattttgcaatagctggttacttgacaaagattgcggtttagtcattgaaagaggatggaacagcagtagcttagaaggttgggctggttttgtccttaattctaaactgaggatggttaaaaatgcagtaaaagcttggctggtctacttccagaaaaataagaaaagaagggaagaagacctgattaaagaaatagaaagtttggatgcttttgccaatttaacaagtctctcagattctaaattagcttccagatcttcaatgaaggcagaactgatgttcttatacagatttaaggagattaatttaattcagaaaagcaagttgaactggatgcagttgggggacgaaaatacgagttttttccacagattgcatgcagctaagaaaaggaagaatctgattacagagctggttaatgaattcagggtgcttgccaaatcttttagagaaattgaaagtctgattctcgaattttatactgaactcttctctaaaagtctgggcctgagaaatattcctataaattttgattggccttgtataactcctcaaaatttaatgcttacagtaaggttttctgagtttgaaataaaagctgctgtcaagtcccttggaaaatgcaaagcccatggactagatggctttatcactgaattccttataaaatattggaatttagttaaaccaaacttgctctctatttttgaggaatttcatcgaaacggtaggtctcacaaccttgcttacaaggttattgccgagagacttaaaaaggtaatgtcttatatcattgctccttcgcaaaacacatttatagaagaaagacacgtattagatcccatccttgttgcaaatgaagtttttgaggactatcggaccaagaagaagcaaggatggttccttaagcttgatatggaaaaagcttttgaccgagttgaacg

Coding sequence (CDS)

ATGAGCTCACGAGAGATTCCCTTTTGGAAGAACAACCAAAGGCACACTTGGTCTCGAGAAGGGGCTACCATCGCAAGATCATTCTGGGACATATTTTTCATAAATAAAGCATGGGATGATGAATTCGAAAACACAAGAGCCAATAGGAAAGCTCGTCTATTTTCTGACCAATTTCCCATTTTACCCAAGGCTGGCTCCATCAGCTGGGGACCCTCCCCTTTCAGATTTTGCAATAGCTGGTTACTTGACAAAGATTGCGGTTTAGTCATTGAAAGAGGATGGAACAGCAGTAGCTTAGAAGGTTGGGCTGGTTTTGTCCTTAATTCTAAACTGAGGATGGTTAAAAATGCAGTAAAAGCTTGGCTGGTCTACTTCCAGAAAAATAAGAAAAGAAGGGAAGAAGACCTGATTAAAGAAATAGAAAGTTTGGATGCTTTTGCCAATTTAACAAGTCTCTCAGATTCTAAATTAGCTTCCAGATCTTCAATGAAGGCAGAACTGATGTTCTTATACAGATTTAAGGAGATTAATTTAATTCAGAAAAGCAAGTTGAACTGGATGCAGTTGGGGGACGAAAATACGAGTTTTTTCCACAGATTGCATGCAGCTAAGAAAAGGAAGAATCTGATTACAGAGCTGGTTAATGAATTCAGGGTGCTTGCCAAATCTTTTAGAGAAATTGAAAGTCTGATTCTCGAATTTTATACTGAACTCTTCTCTAAAAGTCTGGGCCTGAGAAATATTCCTATAAATTTTGATTGGCCTTGTATAACTCCTCAAAATTTAATGCTTACAGTAAGGTTTTCTGAGTTTGAAATAAAAGCTGCTGTCAAGTCCCTTGGAAAATGCAAAGCCCATGGACTAGATGGCTTTATCACTGAATTCCTTATAAAATATTGGAATTTAGTTAAACCAAACTTGCTCTCTATTTTTGAGGAATTTCATCGAAACGGTAGGTCTCACAACCTTGCTTACAAGGTTATTGCCGAGAGACTTAAAAAGGTAATGTCTTATATCATTGCTCCTTCGCAAAACACATTTATAGAAGAAAGACACGTATTAGATCCCATCCTTGTTGCAAATGAAGTTTTTGAGGACTATCGGACCAAGAAGAAGCAAGGATGGTTCCTTAAGCTTGATATGGAAAAAGCTTTTGACCGAGTTGAACG

Protein sequence

MSSREIPFWKNNQRHTWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGPSPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKRREEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGDENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPINFDWPCITPQNLMLTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSIFEEFHRNGRSHNLAYKVIAERLKKVMSYIIAPSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRVEX

Homology

[Close]

BLAST of Cucsa.244400 vs. TrEMBL
Match: A5B978_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 117/379 (30.87%), Postives = 185/379 (48.81%), Query Frame = 1


Query: 12   NQRHTWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGP 71
            N   TWS           D F     WD  F            SD  PI  +     WGP
Sbjct: 916  NAAFTWSNMQVDPICKRLDRFLFXAEWDSFFSQNIQEALPXWTSDHSPICLETNPFMWGP 975

Query: 72   SPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKR 131
            +PFRF N WLL  +        W   ++EGW G     KL+ +K+ +K W      + + 
Sbjct: 976  TPFRFENMWLLHXEFKEKFRDWWQECTVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRE 1035

Query: 132  REEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGD 191
            R++ ++ ++  +D      +L+   ++ R   + EL  L   +E+   QKS++ W++ GD
Sbjct: 1036 RKKHILTDLGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQKSRVKWIKEGD 1095

Query: 192  ENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPIN 251
             N+ FFHR+   ++ +  I  L++E      +   I   I+ F+  L+SK  G       
Sbjct: 1096 CNSKFFHRVATGRRSRKYIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEG 1155

Query: 252  FDWPCITPQN-LMLTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSI 311
             DW  I+ ++ + L   FSE  ++ AV  L K KA G DGF      + W+++K +L+ +
Sbjct: 1156 IDWAPISEESAIWLDRPFSEEXVRMAVFQLNKEKAPGPDGFTLAVYQECWDVIKEDLMRV 1215

Query: 312  FEEFHRNGRSHNLAYKVIAERLKKVMSYIIAPSQNTFIEERHVLDPILVANEVFEDYRTK 371
            F EFH  G    +  KV++ RL+KV+   I  SQ  F+E R +LD +L+ANEV ++ R  
Sbjct: 1216 FFEFHTKG----IIAKVLSGRLRKVLHETIFGSQGAFVEGRQILDAVLIANEVVDEKRRS 1275

Query: 372  KKQGWFLKLDMEKAFDRVE 390
             ++G   K+D EKA+D VE
Sbjct: 1276 GEEGVVFKIDFEKAYDHVE 1290

[Close]

BLAST of Cucsa.244400 vs. TrEMBL
Match: A5C9Z3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 121/412 (29.37%), Postives = 191/412 (46.36%), Query Frame = 1


Query: 12   NQRHTWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGP 71
            N   TWS   A       D F  +  WD  F  +      R  SD   I  +   + WG 
Sbjct: 895  NAAFTWSNMQADPICKRLDRFLFSSEWDTFFFQSFQEALPRWTSDHSLICLETNPLKWGX 954

Query: 72   SPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKR 131
            +PFRF N WLL  +        W   + EGW G     KL+ VK+ +K W +    + K 
Sbjct: 955  TPFRFZNMWLLHPEFKEKFRVWWQECTXEGWEGHKFMRKLKFVKSKLKEWNIXAFGDLKE 1014

Query: 132  REEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGD 191
            +++ ++ ++  +D      +L+   +  R+  + EL  +   +E+   QKS++ W++  D
Sbjct: 1015 KKKLILTDLXRIDLIEQEGNLNLDLVLERTLRRRELEDVLLKEEVQWRQKSRVKWIKEED 1074

Query: 192  ENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPIN 251
             N+ FFHR+   ++ +  I  L++E      S   I   I+ F+  L+SK +G       
Sbjct: 1075 CNSKFFHRVATGRRSRKFIKSLISERGETLNSIEVISEEIVNFFGNLYSKPVGESWRVEG 1134

Query: 252  FDW-PCITPQNLMLTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSI 311
             DW P      + L   F+E E++ AV  L K KA G DGF      + W+++K +L+ +
Sbjct: 1135 IDWVPIFGESGVWLDRPFTEEEVRMAVFQLNKEKAPGPDGFTIAVYQECWDVIKEDLMRV 1194

Query: 312  FEEFHRNG---RSHNLAY------------------------------KVIAERLKKVMS 371
            F EFH NG   +S N  +                              KV++ RL+KV+ 
Sbjct: 1195 FLEFHTNGVINQSTNATFIALVPKKSQSFKISDYRPISLVTSLYKIIAKVLSGRLRKVLH 1254

Query: 372  YIIAPSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRVE 390
              I+ SQ  F+E RH+LD  L+ANEV ++ R   K+G   K+D EKA+D V+
Sbjct: 1255 ETISGSQGAFVEGRHILDVALIANEVVDEKRRSGKEGIVFKIDFEKAYDHVD 1306

[Close]

BLAST of Cucsa.244400 vs. TrEMBL
Match: A5AFR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 122/413 (29.54%), Postives = 191/413 (46.25%), Query Frame = 1


Query: 12  NQRHTWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGP 71
           N   TWS           D F  +  WD  F         R  SD  PI  +     WGP
Sbjct: 29  NAAFTWSNMQVDPICKRLDRFLFSAEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGP 88

Query: 72  SPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKR 131
           +PFRF N WLL  +        W   S+EGW G     KL+ +K+ +K W      + + 
Sbjct: 89  TPFRFENMWLLHPEFKEKFRDWWQECSVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRE 148

Query: 132 REEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGD 191
           R++ ++ ++  +D      +L+   ++ R   + EL  L   +E+   QKS++ W++ GD
Sbjct: 149 RKKHILTDLGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQKSRVKWIKEGD 208

Query: 192 ENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPIN 251
            N+ FFHR+   ++ +  I  L++E      +   I   I+ F+  L+SK  G       
Sbjct: 209 CNSKFFHRVATGRRSRKYIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEG 268

Query: 252 FDWPCITPQNLMLTVR-FSEFEIKAAVKSLGKC-KAHGLDGFITEFLIKYWNLVKPNLLS 311
            DW  I+ ++ +   R FSE E++ AV  L K  KA G DGF      + W+++K +L+ 
Sbjct: 269 IDWAPISEESAIWLDRPFSEEEVRMAVFQLNKAEKAPGPDGFTLAIYQECWDVIKEDLMR 328

Query: 312 IFEEFHRNG---RSHNLAY------------------------------KVIAERLKKVM 371
           +F EFH  G   +S N  +                              KV++ RL+KV+
Sbjct: 329 VFFEFHTKGVINQSTNATFIAMVPKKSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVL 388

Query: 372 SYIIAPSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRVE 390
              I  SQ  F+E R +LD +L+ANEV ++ R   ++G   K+D EKA+D VE
Sbjct: 389 HETIFGSQGAFVEGRQILDAVLIANEVVDEKRRSGEEGVVFKIDFEKAYDHVE 441

[Close]

BLAST of Cucsa.244400 vs. TrEMBL
Match: A5BCI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.8e-44
Identity = 117/407 (28.75%), Postives = 190/407 (46.68%), Query Frame = 1


Query: 16   TWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGPSPFR 75
            TWS           D F  +  W+  F  +      R  SD +PI+ +     WGP+PFR
Sbjct: 846  TWSNMQVNXVCKRLDRFLYSNEWEQAFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFR 905

Query: 76   FCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKRREED 135
            F N WL          R W      GW G     KL+ VK  +K W         +R+ED
Sbjct: 906  FENMWLQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKED 965

Query: 136  LIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGDENTS 195
            ++ ++ + D+      LS   LA R+  K EL  L   +EI+  QK+++ W++ GD N+ 
Sbjct: 966  ILSDLVNFDSLEQEGGLSHELLAQRALKKGELEELILREEIHWRQKARVKWVKEGDCNSR 1025

Query: 196  FFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPINFDWP 255
            FFH++   ++ +  I EL NE  ++  +   I+  IL ++ +L++   G        DW 
Sbjct: 1026 FFHKVANGRRNRKFIKELENENGLMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWS 1085

Query: 256  CITPQNLM-LTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSIFEEF 315
             I+ ++   L   F+E EI  A+  + + KA G DGF        W ++K +L+ +F EF
Sbjct: 1086 PISGESAFRLESPFTEEEIFKAIFQMDRDKAPGPDGFTIAVFQDCWEVIKEDLVKVFTEF 1145

Query: 316  HRNG---RSHNLAY------------------------------KVIAERLKKVMSYIIA 375
            HR+G   +S N ++                              KV+A R++ V+   I 
Sbjct: 1146 HRSGIINQSTNASFIVLLPKKSMSRRISDFRPISLITSLYKIIAKVLAGRIRGVLHETIH 1205

Query: 376  PSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRV 389
             +Q  F++ R +LD +L+ANE+ ++ R   ++G   K+D EKA+D V
Sbjct: 1206 STQGAFVQGRQILDAVLIANEIVDEKRRSGEEGVVFKIDFEKAYDHV 1252

[Close]

BLAST of Cucsa.244400 vs. TrEMBL
Match: A0A0B2R0V5_GLYSO (LINE-1 reverse transcriptase like OS=Glycine soja GN=glysoja_035690 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-43
Identity = 115/399 (28.82%), Postives = 198/399 (49.62%), Query Frame = 1


Query: 25  ARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGPSPFRFCNSWLLDK 84
           ARS  D F I+  W +++  T  ++  R FSD +PI+ ++    WGP PFR  + WL DK
Sbjct: 57  ARSKLDRFLISIEWFNKWPATYQSKLQRNFSDHYPIMLRSKYEDWGPKPFRILDCWLNDK 116

Query: 85  DCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKRREEDLIKEIESLD 144
               ++++ WNS    GW G+VL  K++ +K  ++ W      +  ++ + +  E+  L+
Sbjct: 117 SFQEMVQQSWNSVQFGGWGGYVLKEKIKALKGKLREWNREHFGDTFKKYQKIEDELNKLE 176

Query: 145 AFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGDENTSFFHRLHAAK 204
                  L+  ++ +R  ++ +L    +  E  L QK++  W++ GD N+ +FH +  A 
Sbjct: 177 EDTAGRQLTQHEVVTRKRLQEDLWVAAQSHESLLRQKARSKWIREGDCNSRYFHLMINAT 236

Query: 205 KRKNLITEL-VNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPINFDWPCITP-QNL 264
           +R N +  L +N   +   +   ++  +  F+++ F ++  +R       +  I   QN 
Sbjct: 237 RRNNCLKGLKINGTWIEEPAI--VKEAVRAFFSQRFQEATRIRPTLDGLRFQTIESYQNE 296

Query: 265 MLTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSIFEEFH------- 324
           ML  RF E E+K AV + G  K+ G DG   +F+ ++WN +KP+ L   +EFH       
Sbjct: 297 MLVGRFQEDEVKRAVWNCGSDKSPGPDGINFKFIKQFWNTIKPDFLRFLDEFHVNGIFPR 356

Query: 325 --------------------------RNGRSHNLAYKVIAERLKKVMSYIIAPSQNTFIE 384
                                       G  + +  K++A RLKKVM +II  +Q+ FIE
Sbjct: 357 GSNASFIALIPKILDPQTLNEYRPISLIGCMYKILAKILANRLKKVMPHIIHETQSAFIE 416

Query: 385 ERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRV 389
            RH+L  ++VANE  E+ +  +K     K+D EKA+D V
Sbjct: 417 GRHMLHSVVVANEAVEEAKRCQKPCIVFKVDYEKAYDSV 453

[Close]

BLAST of Cucsa.244400 vs. TAIR10
Match: AT1G43760.1 (AT1G43760.1 DNAse I-like superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-15
Identity = 63/231 (27.27%), Postives = 104/231 (45.02%), Query Frame = 1


Query: 94  WNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKRREEDLIKEIESLDAFANLTSLS 153
           W      G   F L   L+  K   K        N + + ++ +  +ES+ +   LT+ S
Sbjct: 352 WEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQL-LTNPS 411

Query: 154 DSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGDENTSFFHRLHAAKKRKNLITEL 213
           DS        + +  F     E    QKS++ W+Q GD NT FFH++  A + KNLI  L
Sbjct: 412 DSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFL 471

Query: 214 VNEFRVLAKSFREIESLILEFYTELFSKSL------GLRNIPINFDWPCITPQNLMLTVR 273
             +  V  ++  +++ +I+ +YT L            ++ I     + C       L+  
Sbjct: 472 RMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSAL 531

Query: 274 FSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSIFEEFHRNG 319
            S+ EI AAV ++ + KA G D F  EF  + W +VK + ++  +EF R G
Sbjct: 532 PSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTG 581

[Close]

BLAST of Cucsa.244400 vs. TAIR10
Match: AT4G20520.1 (AT4G20520.1 RNA binding;RNA-directed DNA polymerases)

HSP 1 Score: 49.7 bits (117), Expect = 4.8e-06
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 328 IAERLKKVMSYIIAPSQNTFIEERHVLDPILVANEVFEDYRTKK-KQGW-FLKLDMEKAF 387
           + ERLK +M+ +I P+Q +FI  R   D I+   E     R KK  +GW  LKLD+EKA+
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 388 DRV 389
           DR+
Sbjct: 61  DRI 63

[Close]

BLAST of Cucsa.244400 vs. NCBI nr
Match: gi|147838572|emb|CAN74312.1| (hypothetical protein VITISV_037520 [Vitis vinifera])

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-46
Identity = 117/379 (30.87%), Postives = 185/379 (48.81%), Query Frame = 1


Query: 12   NQRHTWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGP 71
            N   TWS           D F     WD  F            SD  PI  +     WGP
Sbjct: 916  NAAFTWSNMQVDPICKRLDRFLFXAEWDSFFSQNIQEALPXWTSDHSPICLETNPFMWGP 975

Query: 72   SPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKR 131
            +PFRF N WLL  +        W   ++EGW G     KL+ +K+ +K W      + + 
Sbjct: 976  TPFRFENMWLLHXEFKEKFRDWWQECTVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRE 1035

Query: 132  REEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGD 191
            R++ ++ ++  +D      +L+   ++ R   + EL  L   +E+   QKS++ W++ GD
Sbjct: 1036 RKKHILTDLGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQKSRVKWIKEGD 1095

Query: 192  ENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPIN 251
             N+ FFHR+   ++ +  I  L++E      +   I   I+ F+  L+SK  G       
Sbjct: 1096 CNSKFFHRVATGRRSRKYIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEG 1155

Query: 252  FDWPCITPQN-LMLTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSI 311
             DW  I+ ++ + L   FSE  ++ AV  L K KA G DGF      + W+++K +L+ +
Sbjct: 1156 IDWAPISEESAIWLDRPFSEEXVRMAVFQLNKEKAPGPDGFTLAVYQECWDVIKEDLMRV 1215

Query: 312  FEEFHRNGRSHNLAYKVIAERLKKVMSYIIAPSQNTFIEERHVLDPILVANEVFEDYRTK 371
            F EFH  G    +  KV++ RL+KV+   I  SQ  F+E R +LD +L+ANEV ++ R  
Sbjct: 1216 FFEFHTKG----IIAKVLSGRLRKVLHETIFGSQGAFVEGRQILDAVLIANEVVDEKRRS 1275

Query: 372  KKQGWFLKLDMEKAFDRVE 390
             ++G   K+D EKA+D VE
Sbjct: 1276 GEEGVVFKIDFEKAYDHVE 1290

[Close]

BLAST of Cucsa.244400 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 126/418 (30.14%), Postives = 196/418 (46.89%), Query Frame = 1


Query: 12   NQRHTWS--REGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISW 71
            N + TWS  RE     R   D F ++   ++ F   R    AR+ SD  PI  ++  + W
Sbjct: 1178 NAQFTWSNFREEPVCRRL--DRFLVSAGCEEIFPEVRQMALARVISDHCPIQLESNKVKW 1237

Query: 72   GPSPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNK 131
            GPSPFRF N WL   +        W S  +EGW G+    KL+  K  V+ W        
Sbjct: 1238 GPSPFRFENMWLQHPEFRNKFNLWWQSEQVEGWEGYKFMIKLKAXKKKVQRWSKESFGEV 1297

Query: 132  KRREEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQL 191
            ++  ++    +E LD    +  L       R  +      L   +E+   Q+SK+ W + 
Sbjct: 1298 EKDFKEAEASLEELDRREGMEGLDVDARRKREELLFXXGDLAYKEEVKWRQRSKVEWXKE 1357

Query: 192  GDENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKS----LGL 251
            GD NT FFHR+ + ++++N I  L  E   + +   EIE  I+ F+  LFS +     GL
Sbjct: 1358 GDGNTKFFHRVASGRRKRNYIERLEXEVGGVIEDANEIEDHIVXFFKSLFSSNEEACWGL 1417

Query: 252  RNIPINFDWPCITPQNLMLTVR-FSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVK 311
              I    +W  I+        R F E E++ AV   GK K+ G DG+  + + + W+++K
Sbjct: 1418 EGI----NWAPISELEANWIERPFEEAEVQRAVFDCGKDKSPGPDGYSLQMIQQCWDILK 1477

Query: 312  PNLLSIFEEFHRNG---------------------------------RSHNLAYKVIAER 371
             N++ I EEF+  G                                   + +  K +A R
Sbjct: 1478 ANIMKIMEEFYETGIINAVTNETFICLIPKKSDSMKVTDFRPISLVTGLYKIMAKTLASR 1537

Query: 372  LKKVMSYIIAPSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRVE 390
            LK+V+   I+ +Q  F+++R +LD +L+ANEV E+ R KK++G  LK+D EKA+D VE
Sbjct: 1538 LKEVLGSTISQNQGAFVKDRQILDAVLIANEVVEEVRQKKEEGLVLKIDFEKAYDHVE 1589

[Close]

BLAST of Cucsa.244400 vs. NCBI nr
Match: gi|147800123|emb|CAN68820.1| (hypothetical protein VITISV_009132 [Vitis vinifera])

HSP 1 Score: 188.3 bits (477), Expect = 2.5e-44
Identity = 121/412 (29.37%), Postives = 191/412 (46.36%), Query Frame = 1


Query: 12   NQRHTWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGP 71
            N   TWS   A       D F  +  WD  F  +      R  SD   I  +   + WG 
Sbjct: 895  NAAFTWSNMQADPICKRLDRFLFSSEWDTFFFQSFQEALPRWTSDHSLICLETNPLKWGX 954

Query: 72   SPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKR 131
            +PFRF N WLL  +        W   + EGW G     KL+ VK+ +K W +    + K 
Sbjct: 955  TPFRFZNMWLLHPEFKEKFRVWWQECTXEGWEGHKFMRKLKFVKSKLKEWNIXAFGDLKE 1014

Query: 132  REEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGD 191
            +++ ++ ++  +D      +L+   +  R+  + EL  +   +E+   QKS++ W++  D
Sbjct: 1015 KKKLILTDLXRIDLIEQEGNLNLDLVLERTLRRRELEDVLLKEEVQWRQKSRVKWIKEED 1074

Query: 192  ENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPIN 251
             N+ FFHR+   ++ +  I  L++E      S   I   I+ F+  L+SK +G       
Sbjct: 1075 CNSKFFHRVATGRRSRKFIKSLISERGETLNSIEVISEEIVNFFGNLYSKPVGESWRVEG 1134

Query: 252  FDW-PCITPQNLMLTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSI 311
             DW P      + L   F+E E++ AV  L K KA G DGF      + W+++K +L+ +
Sbjct: 1135 IDWVPIFGESGVWLDRPFTEEEVRMAVFQLNKEKAPGPDGFTIAVYQECWDVIKEDLMRV 1194

Query: 312  FEEFHRNG---RSHNLAY------------------------------KVIAERLKKVMS 371
            F EFH NG   +S N  +                              KV++ RL+KV+ 
Sbjct: 1195 FLEFHTNGVINQSTNATFIALVPKKSQSFKISDYRPISLVTSLYKIIAKVLSGRLRKVLH 1254

Query: 372  YIIAPSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRVE 390
              I+ SQ  F+E RH+LD  L+ANEV ++ R   K+G   K+D EKA+D V+
Sbjct: 1255 ETISGSQGAFVEGRHILDVALIANEVVDEKRRSGKEGIVFKIDFEKAYDHVD 1306

[Close]

BLAST of Cucsa.244400 vs. NCBI nr
Match: gi|147841235|emb|CAN75609.1| (hypothetical protein VITISV_002943 [Vitis vinifera])

HSP 1 Score: 188.3 bits (477), Expect = 2.5e-44
Identity = 122/413 (29.54%), Postives = 191/413 (46.25%), Query Frame = 1


Query: 12  NQRHTWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGP 71
           N   TWS           D F  +  WD  F         R  SD  PI  +     WGP
Sbjct: 29  NAAFTWSNMQVDPICKRLDRFLFSAEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGP 88

Query: 72  SPFRFCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKR 131
           +PFRF N WLL  +        W   S+EGW G     KL+ +K+ +K W      + + 
Sbjct: 89  TPFRFENMWLLHPEFKEKFRDWWQECSVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRE 148

Query: 132 REEDLIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGD 191
           R++ ++ ++  +D      +L+   ++ R   + EL  L   +E+   QKS++ W++ GD
Sbjct: 149 RKKHILTDLGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQKSRVKWIKEGD 208

Query: 192 ENTSFFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPIN 251
            N+ FFHR+   ++ +  I  L++E      +   I   I+ F+  L+SK  G       
Sbjct: 209 CNSKFFHRVATGRRSRKYIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEG 268

Query: 252 FDWPCITPQNLMLTVR-FSEFEIKAAVKSLGKC-KAHGLDGFITEFLIKYWNLVKPNLLS 311
            DW  I+ ++ +   R FSE E++ AV  L K  KA G DGF      + W+++K +L+ 
Sbjct: 269 IDWAPISEESAIWLDRPFSEEEVRMAVFQLNKAEKAPGPDGFTLAIYQECWDVIKEDLMR 328

Query: 312 IFEEFHRNG---RSHNLAY------------------------------KVIAERLKKVM 371
           +F EFH  G   +S N  +                              KV++ RL+KV+
Sbjct: 329 VFFEFHTKGVINQSTNATFIAMVPKKSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVL 388

Query: 372 SYIIAPSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRVE 390
              I  SQ  F+E R +LD +L+ANEV ++ R   ++G   K+D EKA+D VE
Sbjct: 389 HETIFGSQGAFVEGRQILDAVLIANEVVDEKRRSGEEGVVFKIDFEKAYDHVE 441

[Close]

BLAST of Cucsa.244400 vs. NCBI nr
Match: gi|147811389|emb|CAN65484.1| (hypothetical protein VITISV_029474 [Vitis vinifera])

HSP 1 Score: 187.2 bits (474), Expect = 5.5e-44
Identity = 117/407 (28.75%), Postives = 190/407 (46.68%), Query Frame = 1


Query: 16   TWSREGATIARSFWDIFFINKAWDDEFENTRANRKARLFSDQFPILPKAGSISWGPSPFR 75
            TWS           D F  +  W+  F  +      R  SD +PI+ +     WGP+PFR
Sbjct: 846  TWSNMQVNXVCKRLDRFLYSNEWEQAFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTPFR 905

Query: 76   FCNSWLLDKDCGLVIERGWNSSSLEGWAGFVLNSKLRMVKNAVKAWLVYFQKNKKRREED 135
            F N WL          R W      GW G     KL+ VK  +K W         +R+ED
Sbjct: 906  FENMWLQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKED 965

Query: 136  LIKEIESLDAFANLTSLSDSKLASRSSMKAELMFLYRFKEINLIQKSKLNWMQLGDENTS 195
            ++ ++ + D+      LS   LA R+  K EL  L   +EI+  QK+++ W++ GD N+ 
Sbjct: 966  ILSDLVNFDSLEQEGGLSHELLAQRALKKGELEELILREEIHWRQKARVKWVKEGDCNSR 1025

Query: 196  FFHRLHAAKKRKNLITELVNEFRVLAKSFREIESLILEFYTELFSKSLGLRNIPINFDWP 255
            FFH++   ++ +  I EL NE  ++  +   I+  IL ++ +L++   G        DW 
Sbjct: 1026 FFHKVANGRRNRKFIKELENENGLMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWS 1085

Query: 256  CITPQNLM-LTVRFSEFEIKAAVKSLGKCKAHGLDGFITEFLIKYWNLVKPNLLSIFEEF 315
             I+ ++   L   F+E EI  A+  + + KA G DGF        W ++K +L+ +F EF
Sbjct: 1086 PISGESAFRLESPFTEEEIFKAIFQMDRDKAPGPDGFTIAVFQDCWEVIKEDLVKVFTEF 1145

Query: 316  HRNG---RSHNLAY------------------------------KVIAERLKKVMSYIIA 375
            HR+G   +S N ++                              KV+A R++ V+   I 
Sbjct: 1146 HRSGIINQSTNASFIVLLPKKSMSRRISDFRPISLITSLYKIIAKVLAGRIRGVLHETIH 1205

Query: 376  PSQNTFIEERHVLDPILVANEVFEDYRTKKKQGWFLKLDMEKAFDRV 389
             +Q  F++ R +LD +L+ANE+ ++ R   ++G   K+D EKA+D V
Sbjct: 1206 STQGAFVQGRQILDAVLIANEIVDEKRRSGEEGVVFKIDFEKAYDHV 1252

The following BLAST results are available for this feature:

BLAST of Cucsa.244400 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B978_VITVI	1.4e-46	30.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1	[more]
A5C9Z3_VITVI	1.7e-44	29.37	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1	[more]
A5AFR7_VITVI	1.7e-44	29.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1	[more]
A5BCI7_VITVI	3.8e-44	28.75	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1	[more]
A0A0B2R0V5_GLYSO	5.5e-43	28.82	LINE-1 reverse transcriptase like OS=Glycine soja GN=glysoja_035690 PE=4 SV=1	[more]

BLAST of Cucsa.244400 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G43760.1	2.5e-15	27.27	DNAse I-like superfamily protein	[more]
AT4G20520.1	4.8e-06	44.44	RNA binding;RNA-directed DNA polymerases	[more]

BLAST of Cucsa.244400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147838572\|emb\|CAN74312.1\|	2.0e-46	30.87	hypothetical protein VITISV_037520 [Vitis vinifera]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	1.0e-45	30.14	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]
gi\|147800123\|emb\|CAN68820.1\|	2.5e-44	29.37	hypothetical protein VITISV_009132 [Vitis vinifera]	[more]
gi\|147841235\|emb\|CAN75609.1\|	2.5e-44	29.54	hypothetical protein VITISV_002943 [Vitis vinifera]	[more]
gi\|147811389\|emb\|CAN65484.1\|	5.5e-44	28.75	hypothetical protein VITISV_029474 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.244400.1	Cucsa.244400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 326..389 score: 7.
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 150..389 score: 5.7E-43coord: 11..127 score: 5.7
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 11..127 score: 5.7E-43coord: 150..389 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.244400	Cucurbita moschata (Rifu)	cgycmoB0684
Cucsa.244400	Cucurbita moschata (Rifu)	cgycmoB0685
Cucsa.244400	Cucurbita moschata (Rifu)	cgycmoB0686
Cucsa.244400	Cucurbita moschata (Rifu)	cgycmoB0687
Cucsa.244400	Wild cucumber (PI 183967)	cgycpiB366
Cucsa.244400	Wild cucumber (PI 183967)	cgycpiB367
Cucsa.244400	Cucumber (Chinese Long) v2	cgycuB350
Cucsa.244400	Cucumber (Chinese Long) v2	cgycuB351
Cucsa.244400	Melon (DHL92) v3.5.1	cgymeB416
Cucsa.244400	Melon (DHL92) v3.5.1	cgymeB417
Cucsa.244400	Watermelon (Charleston Gray)	cgywcgB432
Cucsa.244400	Watermelon (Charleston Gray)	cgywcgB433
Cucsa.244400	Watermelon (97103) v1	cgywmB462
Cucsa.244400	Watermelon (97103) v1	cgywmB463
Cucsa.244400	Cucurbita pepo (Zucchini)	cgycpeB0652
Cucsa.244400	Cucurbita pepo (Zucchini)	cgycpeB0653
Cucsa.244400	Cucurbita pepo (Zucchini)	cgycpeB0654
Cucsa.244400	Bottle gourd (USVL1VR-Ls)	cgylsiB403
Cucsa.244400	Bottle gourd (USVL1VR-Ls)	cgylsiB404
Cucsa.244400	Melon (DHL92) v3.6.1	cgymedB411
Cucsa.244400	Melon (DHL92) v3.6.1	cgymedB412
Cucsa.244400	Silver-seed gourd	carcgyB0253
Cucsa.244400	Silver-seed gourd	carcgyB0436
Cucsa.244400	Silver-seed gourd	carcgyB0734
Cucsa.244400	Cucumber (Chinese Long) v3	cgycucB369
Cucsa.244400	Cucumber (Chinese Long) v3	cgycucB370
Cucsa.244400	Watermelon (97103) v2	cgywmbB434
Cucsa.244400	Watermelon (97103) v2	cgywmbB435
Cucsa.244400	Wax gourd	cgywgoB493
Cucsa.244400	Wax gourd	cgywgoB494
Cucsa.244400	Cucumber (Gy14) v1	cgycgyB117
Cucsa.244400	Cucurbita maxima (Rimu)	cgycmaB0684
Cucsa.244400	Cucurbita maxima (Rimu)	cgycmaB0685
Cucsa.244400	Cucurbita maxima (Rimu)	cgycmaB0686
Cucsa.244400	Cucurbita maxima (Rimu)	cgycmaB0687