Cucsa.241720 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.241720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Hairpin-inducing protein
Location	scaffold02047 : 1641698 .. 1642357 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACAGACAGCCCCATTTAAACAGCAACTTCTATGGCCCCGCCGTGCCTCCTCCGTCAAAATCACGCCGTGGCCGCCGCATTCTATGTACCATTTTGATGGTGGCAATTGGGCTCATTGTAGGGGCTGGTATTCTATTATTGATATTAGGACTTGTATACAGTCCACACAAGTTGGTGTTCAATGTGAGCAGTGCTAGACTCACCCAATTCAACTTGACAACAACATCTTCCAATCAACTCCATTACTCATTGGCTCTTAACGTCACCATTCGAAACCCCAACAAACGCTACCGTGTTTACTATGACTACAACGAAATGGCCGTTCTTTATAAAAACCAAAGGCTTGCTACTCAATGGCTTCCCTCGTTCTTCCAAGAAACCAAATCCACCGTGGTCGTCAGCCCCAACAACTTCGACGGTCAGAAGCTCATGTTTCTCACCAGTGATGAACATGTCGAGTTCAATGCCGAGAAAGCTAATGGGATATATTCAATTGATGTGAAGTTCTTTTTCCGTTTAAGGATGAAATCCGGTCAAGTGGTGTTGAAATTCAAGCCTAAGGTGTATTGTGGATTGAAGGTTCCGTTGGGTAGCGACATCGACCCTAAATCTATCTCTTTATTTTCCAACACTGATTGTGATTTCAGTTTCTGA

mRNA sequence

ATGGCTGACAGACAGCCCCATTTAAACAGCAACTTCTATGGCCCCGCCGTGCCTCCTCCGTCAAAATCACGCCGTGGCCGCCGCATTCTATGTACCATTTTGATGGTGGCAATTGGGCTCATTGTAGGGGCTGGTATTCTATTATTGATATTAGGACTTGTATACAGTCCACACAAGTTGGTGTTCAATGTGAGCAGTGCTAGACTCACCCAATTCAACTTGACAACAACATCTTCCAATCAACTCCATTACTCATTGGCTCTTAACGTCACCATTCGAAACCCCAACAAACGCTACCGTGTTTACTATGACTACAACGAAATGGCCGTTCTTTATAAAAACCAAAGGCTTGCTACTCAATGGCTTCCCTCGTTCTTCCAAGAAACCAAATCCACCGTGGTCGTCAGCCCCAACAACTTCGACGGTCAGAAGCTCATGTTTCTCACCAGTGATGAACATGTCGAGTTCAATGCCGAGAAAGCTAATGGGATATATTCAATTGATGTGAAGTTCTTTTTCCGTTTAAGGATGAAATCCGGTCAAGTGGTGTTGAAATTCAAGCCTAAGGTGTATTGTGGATTGAAGGTTCCGTTGGGTAGCGACATCGACCCTAAATCTATCTCTTTATTTTCCAACACTGATTGTGATTTCAGTTTCTGA

Coding sequence (CDS)

ATGGCTGACAGACAGCCCCATTTAAACAGCAACTTCTATGGCCCCGCCGTGCCTCCTCCGTCAAAATCACGCCGTGGCCGCCGCATTCTATGTACCATTTTGATGGTGGCAATTGGGCTCATTGTAGGGGCTGGTATTCTATTATTGATATTAGGACTTGTATACAGTCCACACAAGTTGGTGTTCAATGTGAGCAGTGCTAGACTCACCCAATTCAACTTGACAACAACATCTTCCAATCAACTCCATTACTCATTGGCTCTTAACGTCACCATTCGAAACCCCAACAAACGCTACCGTGTTTACTATGACTACAACGAAATGGCCGTTCTTTATAAAAACCAAAGGCTTGCTACTCAATGGCTTCCCTCGTTCTTCCAAGAAACCAAATCCACCGTGGTCGTCAGCCCCAACAACTTCGACGGTCAGAAGCTCATGTTTCTCACCAGTGATGAACATGTCGAGTTCAATGCCGAGAAAGCTAATGGGATATATTCAATTGATGTGAAGTTCTTTTTCCGTTTAAGGATGAAATCCGGTCAAGTGGTGTTGAAATTCAAGCCTAAGGTGTATTGTGGATTGAAGGTTCCGTTGGGTAGCGACATCGACCCTAAATCTATCTCTTTATTTTCCAACACTGATTGTGATTTCAGTTTCTGA

Protein sequence

MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSGQVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF*

Homology

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BLAST of Cucsa.241720 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 90/230 (39.13%), Postives = 128/230 (55.65%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRR---------ILCTILMVAIGLIVGAGILLLIL 60
           MA  QP LN  FYGP+VPPP+     RR         +L   + V I LIV  G+  LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  GLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVL 120
            L+  P  + F+V+ A LT+F+  T+  N L Y+LAL V +RNPNKR  +YYD  E    
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFD-HTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAY 120

Query: 121 YKNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKF 180
           Y+ +R +T  L  F+Q  K+T V++P  F GQ L+   + +    NAE+ +G+Y+I++KF
Sbjct: 121 YEGKRFSTITLTPFYQGHKNTTVLTPT-FQGQNLVIFNAGQSRTLNAERISGVYNIEIKF 180

Query: 181 FFRLRMKSGQVVL-KFKPKVYC-GLKVPLGSDIDPKSISLFSNTDCDFSF 220
             R+R K G +   + KPKV C  L++PL +     + S      CDF F
Sbjct: 181 RLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVFPIKCDFDF 227

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BLAST of Cucsa.241720 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 89/233 (38.20%), Postives = 123/233 (52.79%), Query Frame = 1


Query: 8   LNSNFYGPAVPPPSK--SRRGRR-----------------ILCTILMVAIGLIVGAGILL 67
           LN  +YGP++PPP K     GRR                 IL  I  + I + V  GI  
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILGLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEM 127
           LI+ L++ P+ + F+V+ A+LT+F L  T  N L Y+L LN TIRNPN+R  VYYD  E+
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPT--NNLRYNLDLNFTIRNPNRRIGVYYDEIEV 123

Query: 128 AVLYKNQRLA-TQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSI 187
              Y +QR   +  +  F+Q  K+T VV      GQ+L+ L   E  + N +  + IY I
Sbjct: 124 RGYYGDQRFGMSNNISKFYQGHKNTTVVG-TKLVGQQLVLLDGGERKDLNEDVNSQIYRI 183

Query: 188 DVKFFFRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
           D K   ++R K G +   +FKPK+ C LKVPL S  +  S  +F  T CD  F
Sbjct: 184 DAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS--NSTSGFVFQPTKCDVDF 231

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BLAST of Cucsa.241720 vs. Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-17
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 62  FNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQW 121
           F V  A LT F+L   S+N L YSL+LN++IRN      ++YD  E  V Y NQRL    
Sbjct: 9   FQVYDAELTHFDLE--SNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVP 68

Query: 122 LPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLR-MKSG 181
           +P F+  +K+T+++    F+GQ L+ L  +E  +F  ++  G+Y IDVK     R M   
Sbjct: 69  MPLFYLGSKNTMLLRA-LFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLH 128

Query: 182 QVVLKFKPKVYCGLKVPL 199
            V    KP V C LK+PL
Sbjct: 129 LVTWPMKPVVRCHLKIPL 143

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BLAST of Cucsa.241720 vs. TrEMBL
Match: A0A0A0LB18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779000 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 4.8e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL 60
           MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL
Sbjct: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL 60

Query: 61  VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ 120
           VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ
Sbjct: 61  VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ 120

Query: 121 WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 180
           WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG
Sbjct: 121 WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 180

Query: 181 QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
           QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF
Sbjct: 181 QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 219

[Close]

BLAST of Cucsa.241720 vs. TrEMBL
Match: A0A0A0LBJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.8e-54
Identity = 120/228 (52.63%), Postives = 157/228 (68.86%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKS------RRGRR--ILCTILMVAIGLIVGAGILLLILG 60
           MAD+QPHLN  FYGPAVPPP K+      RRG    +L T L + + ++V  GI +LIL 
Sbjct: 1   MADKQPHLNGAFYGPAVPPPPKTYHHHAHRRGCACCLLTTFLKLLVTIVVVVGIAVLILW 60

Query: 61  LVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLY 120
            ++ PHKL F+V+ A LT+FN+   S NQLHY+LALN+TIRNPNKR  VYYD  E +  Y
Sbjct: 61  FLFRPHKLTFDVTDAELTRFNI---SGNQLHYNLALNLTIRNPNKRIGVYYDVIEASPFY 120

Query: 121 KNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFF 180
           K+QRL TQWLP F+Q  K+T V+SP +FDGQ+++FL  D+  EFN E   GI+++D++F 
Sbjct: 121 KDQRLNTQWLPPFYQGHKTTTVLSP-HFDGQQIVFLAGDKLTEFNGETLAGIFNVDLRFR 180

Query: 181 FRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
            +LR+K G V + KFKPKV C LKVPL S+ +  S +    T CDF F
Sbjct: 181 LQLRLKVGVVRIGKFKPKVNCELKVPLKSNAN--SFTFLQATRCDFDF 222

[Close]

BLAST of Cucsa.241720 vs. TrEMBL
Match: A0A0A0LGS5_CUCSA (Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.3e-51
Identity = 116/228 (50.88%), Postives = 150/228 (65.79%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRR----GRRILC----TILMVAIGLIVGAGILLLILG 60
           MAD+QPHLN  FYGPAVPPP+K+      GR   C    T L   I ++V  G+ +L+  
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60

Query: 61  LVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLY 120
           LV+ P+KL F+V+ A+LT+FN+   S NQLHY LALN+T+RNPNKR  VYYD  E +  Y
Sbjct: 61  LVFRPNKLKFDVTGAQLTRFNV---SGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYY 120

Query: 121 KNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFF 180
           K+QRL TQWL  F+Q  K+T V+SP  FDGQ+++    D+  EFN E   G++ +DVK  
Sbjct: 121 KDQRLNTQWLTPFYQGHKTTSVLSP-QFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIR 180

Query: 181 FRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
            RLR+K G V + KF+PKV C LKVPL S  +P S + F  T CDF F
Sbjct: 181 LRLRLKVGAVRIGKFRPKVNCELKVPLKS--NPNSFT-FQTTRCDFDF 221

[Close]

BLAST of Cucsa.241720 vs. TrEMBL
Match: A0A059A5J9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02612 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-42
Identity = 100/232 (43.10%), Postives = 142/232 (61.21%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKS--RRGRR----------ILCTILMVAIGLIVGAGILL 60
           MA++QPHLN  +YGPAVPP   S  R GR           +L  I  + + ++V  G+L 
Sbjct: 1   MAEKQPHLNGAYYGPAVPPKQNSYHRPGRGGGCVCGCGCCLLKLIFNLVLTVVVAVGLLA 60

Query: 61  LILGLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEM 120
           LI  L++ P+ + F+V+ A LTQFN T T  N L Y L LN+TIRNPN+R  +YYD  E+
Sbjct: 61  LIFWLIFRPNLVKFHVTDAELTQFNFTAT--NTLSYDLKLNLTIRNPNRRIGIYYDSIEV 120

Query: 121 AVLYKNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSID 180
             LY+ QRLA+ +L  F+Q  K+T  +SP  F GQKL+ L++ E  +FN+E+  G+Y ID
Sbjct: 121 RALYEGQRLASDYLTPFYQGHKNTTTLSP-AFQGQKLVQLSTSEQSDFNSEQTAGVYDID 180

Query: 181 VKFFFRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
           +K + R+R K G++   + KP+V CGLKVPL S     + + F    CD  +
Sbjct: 181 MKLYLRVRFKLGKIKTFRIKPRVKCGLKVPLSSS-GSAATATFQTEKCDIDW 228

[Close]

BLAST of Cucsa.241720 vs. TrEMBL
Match: B9T2S1_RICCO (Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42
Identity = 95/228 (41.67%), Postives = 143/228 (62.72%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRR--------ILCTILMVAIGLIVGAGILLLILG 60
           MA++Q  LN  +YGPA+PPP    R  R        +L  +L + I + V  G+ +LI  
Sbjct: 1   MAEKQAQLNGAYYGPAIPPPQSYHRPGRSGCGCGCCLLSCLLKIIITIAVVLGLAVLIFW 60

Query: 61  LVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLY 120
           LV  P+K+ F+V+ A L++FN+   ++N LHY+LALN+T+RNPNK+  +YYD  E    Y
Sbjct: 61  LVVRPNKVKFHVTEANLSEFNI---NNNTLHYNLALNITVRNPNKKIGIYYDRIEARGKY 120

Query: 121 KNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFF 180
           ++QR  +Q+L  F+Q  K+T +++P  F GQ+LM L+ DE  +FN E+ +G+YSIDV  +
Sbjct: 121 EDQRFGSQFLTPFYQGHKNTSILTP-AFQGQQLMLLSGDELTDFNEERVSGVYSIDVTLY 180

Query: 181 FRLRMKSGQVVL-KFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
            ++R K G + + KFKPK+ C LKVP  S   P     F  T+CD+ +
Sbjct: 181 LKIRFKIGDLKIGKFKPKIQCELKVPSNSSAVP-----FQRTECDWDY 219

[Close]

BLAST of Cucsa.241720 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-35
Identity = 90/230 (39.13%), Postives = 128/230 (55.65%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRR---------ILCTILMVAIGLIVGAGILLLIL 60
           MA  QP LN  FYGP+VPPP+     RR         +L   + V I LIV  G+  LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  GLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVL 120
            L+  P  + F+V+ A LT+F+  T+  N L Y+LAL V +RNPNKR  +YYD  E    
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFD-HTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAY 120

Query: 121 YKNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKF 180
           Y+ +R +T  L  F+Q  K+T V++P  F GQ L+   + +    NAE+ +G+Y+I++KF
Sbjct: 121 YEGKRFSTITLTPFYQGHKNTTVLTPT-FQGQNLVIFNAGQSRTLNAERISGVYNIEIKF 180

Query: 181 FFRLRMKSGQVVL-KFKPKVYC-GLKVPLGSDIDPKSISLFSNTDCDFSF 220
             R+R K G +   + KPKV C  L++PL +     + S      CDF F
Sbjct: 181 RLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVFPIKCDFDF 227

[Close]

BLAST of Cucsa.241720 vs. TAIR10
Match: AT5G06320.1 (AT5G06320.1 NDR1/HIN1-like 3)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 89/233 (38.20%), Postives = 123/233 (52.79%), Query Frame = 1


Query: 8   LNSNFYGPAVPPPSK--SRRGRR-----------------ILCTILMVAIGLIVGAGILL 67
           LN  +YGP++PPP K     GRR                 IL  I  + I + V  GI  
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILGLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEM 127
           LI+ L++ P+ + F+V+ A+LT+F L  T  N L Y+L LN TIRNPN+R  VYYD  E+
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPT--NNLRYNLDLNFTIRNPNRRIGVYYDEIEV 123

Query: 128 AVLYKNQRLA-TQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSI 187
              Y +QR   +  +  F+Q  K+T VV      GQ+L+ L   E  + N +  + IY I
Sbjct: 124 RGYYGDQRFGMSNNISKFYQGHKNTTVVG-TKLVGQQLVLLDGGERKDLNEDVNSQIYRI 183

Query: 188 DVKFFFRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
           D K   ++R K G +   +FKPK+ C LKVPL S  +  S  +F  T CD  F
Sbjct: 184 DAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS--NSTSGFVFQPTKCDVDF 231

[Close]

BLAST of Cucsa.241720 vs. TAIR10
Match: AT3G11650.1 (AT3G11650.1 NDR1/HIN1-like 2)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-30
Identity = 84/241 (34.85%), Postives = 121/241 (50.21%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRR----------------------GRRILCTILMVAI 60
           M  +QP+LN  +YGP++PPP K+ R                      G  IL  I  + I
Sbjct: 1   MGSKQPYLNGAYYGPSIPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILI 60

Query: 61  GLIVGAGILLLILGLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKR 120
            + V  G+  LIL L++ P+ + F V+ A L +F+     +N LHYSL LN TIRNPN+R
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDP--NNNLHYSLDLNFTIRNPNQR 120

Query: 121 YRVYYDYNEMAVLYKNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNA 180
             VYYD   ++  Y +QR  +  + SF+Q  K+T V+     +GQ L+ L      +   
Sbjct: 121 VGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVIL-TKIEGQNLVVLGDGARTDLKD 180

Query: 181 EKANGIYSIDVKFFFRLRMKSGQV-VLKFKPKVYC-GLKVPLGSDIDPKSISLFSNTDCD 218
           ++ +GIY I+ K    +R K   +   K KPK+ C  LK+PLGS         F    CD
Sbjct: 181 DEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFK-FQPVQCD 237

[Close]

BLAST of Cucsa.241720 vs. TAIR10
Match: AT2G35460.1 (AT2G35460.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-29
Identity = 81/233 (34.76%), Postives = 121/233 (51.93%), Query Frame = 1


Query: 8   LNSNFYGPAVPPPSKS-----RRGRRILC-------------------TILMVAIGLIVG 67
           LN   YGP + PP K+     RRG  + C                    I  + IG++V 
Sbjct: 5   LNGASYGPPIKPPVKTYYSHGRRGSDVGCGICGCFSSCLLCCGGCLVNIICNILIGVLVC 64

Query: 68  AGILLLILGLVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYY 127
            G++ LIL  +  P+ + F V+ A LT+F     S N LHY+++LN +IRNPN+R  ++Y
Sbjct: 65  LGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHN-LHYNISLNFSIRNPNQRLGIHY 124

Query: 128 DYNEMAVLYKNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANG 187
           D  E+   Y +QR +   + SF+Q  K+T VV     +GQKL+ L +    +F  ++ +G
Sbjct: 125 DQLEVRGYYGDQRFSAANMTSFYQGHKNTTVVG-TELNGQKLVLLGAGGRRDFREDRRSG 184

Query: 188 IYSIDVKFFFRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDC 216
           +Y IDVK  F+LR K G +     +PK+ C LKVPL +    +    F  T C
Sbjct: 185 VYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQ-FHPTKC 234

[Close]

BLAST of Cucsa.241720 vs. TAIR10
Match: AT1G32270.1 (AT1G32270.1 syntaxin, putative)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 62  FNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQW 121
           F V  A LT F+L   S+N L YSL+LN++IRN      ++YD  E  V Y NQRL    
Sbjct: 9   FQVYDAELTHFDLE--SNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVP 68

Query: 122 LPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLR-MKSG 181
           +P F+  +K+T+++    F+GQ L+ L  +E  +F  ++  G+Y IDVK     R M   
Sbjct: 69  MPLFYLGSKNTMLLRA-LFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLH 128

Query: 182 QVVLKFKPKVYCGLKVPL 199
            V    KP V C LK+PL
Sbjct: 129 LVTWPMKPVVRCHLKIPL 143

[Close]

BLAST of Cucsa.241720 vs. NCBI nr
Match: gi|700204062|gb|KGN59195.1| (hypothetical protein Csa_3G779000 [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 7.0e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL 60
           MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL
Sbjct: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL 60

Query: 61  VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ 120
           VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ
Sbjct: 61  VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ 120

Query: 121 WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 180
           WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG
Sbjct: 121 WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 180

Query: 181 QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
           QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF
Sbjct: 181 QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 219

[Close]

BLAST of Cucsa.241720 vs. NCBI nr
Match: gi|778684448|ref|XP_004136711.2| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 7.0e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL 60
           MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL
Sbjct: 2   MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL 61

Query: 61  VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ 120
           VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ
Sbjct: 62  VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ 121

Query: 121 WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 180
           WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG
Sbjct: 122 WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 181

Query: 181 QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
           QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF
Sbjct: 182 QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220

[Close]

BLAST of Cucsa.241720 vs. NCBI nr
Match: gi|659085772|ref|XP_008443594.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 398.7 bits (1023), Expect = 6.8e-108
Identity = 198/219 (90.41%), Postives = 203/219 (92.69%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRRILCTILMVAIGLIVGAGILLLILGLVYSPHKL 60
           MADRQPHLNSNFYGPAVPPPSKSRRGRR+LCTILMVAIG IV  GILLLILGL+YSPHKL
Sbjct: 1   MADRQPHLNSNFYGPAVPPPSKSRRGRRLLCTILMVAIGFIVAVGILLLILGLIYSPHKL 60

Query: 61  VFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLYKNQRLATQ 120
            FNVSSARLTQFNLTT  SNQL Y+LALNVTIRNPNKRYRVYYD NEMA+LYKNQRL T 
Sbjct: 61  EFNVSSARLTQFNLTT-GSNQLRYTLALNVTIRNPNKRYRVYYDANEMAILYKNQRLETH 120

Query: 121 WLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 180
           WLP FFQE+KSTVVV PNNFDGQKLMFL SDEHVEFNAEKANGIYSIDVKFFFRLRMKSG
Sbjct: 121 WLPLFFQESKSTVVVGPNNFDGQKLMFLNSDEHVEFNAEKANGIYSIDVKFFFRLRMKSG 180

Query: 181 QVVLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
           QVVLKFKPKVYCGLKVPLGSDIDP  ISLFSNT CDFSF
Sbjct: 181 QVVLKFKPKVYCGLKVPLGSDIDPNMISLFSNTACDFSF 218

[Close]

BLAST of Cucsa.241720 vs. NCBI nr
Match: gi|659084480|ref|XP_008442909.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 118/228 (51.75%), Postives = 158/228 (69.30%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKS--RRGRR------ILCTILMVAIGLIVGAGILLLILG 60
           MAD+QPHLN  FYGPAVPPP+K+  R G R      +L T L + I ++V  GI +L+L 
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHRRGCACCLLTTFLKLLITIVVVVGIAVLVLW 60

Query: 61  LVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLY 120
           LV+ PHKL F+V+ A LT+FN+   S NQLHY++ALN+T+RNPN R  VYYD  E +  Y
Sbjct: 61  LVFRPHKLTFHVTDAELTRFNI---SGNQLHYNMALNLTVRNPNNRIGVYYDVIEASPFY 120

Query: 121 KNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFF 180
           K+QRL TQWLP F+Q+ K+T V+ P +F+GQ+++FL  D+  EFN E   G++++D+ F 
Sbjct: 121 KDQRLNTQWLPPFYQDHKTTTVLRP-HFNGQQIVFLAGDKLTEFNGETLAGVFNVDLTFR 180

Query: 181 FRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
            +LR+K G V + KFKPKV C LKVPL S  +P S + F  T CDF F
Sbjct: 181 LQLRLKVGAVRIGKFKPKVNCELKVPLKS--NPNSFTFFQTTRCDFDF 222

[Close]

BLAST of Cucsa.241720 vs. NCBI nr
Match: gi|659084478|ref|XP_008442908.1| (PREDICTED: protein YLS9 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.5e-54
Identity = 121/228 (53.07%), Postives = 154/228 (67.54%), Query Frame = 1


Query: 1   MADRQPHLNSNFYGPAVPPPSKSRR----GRRILC----TILMVAIGLIVGAGILLLILG 60
           MAD+QPHLN  FYGPAVPPP+K+      GR   C    T L   I ++V  G+ +L+L 
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFFIAIVVVLGVTVLVLW 60

Query: 61  LVYSPHKLVFNVSSARLTQFNLTTTSSNQLHYSLALNVTIRNPNKRYRVYYDYNEMAVLY 120
           LV+ P+KL F+V+ A LT+FN+   S NQLHY+LALN+T+RNPNKR  VYYD  E +  Y
Sbjct: 61  LVFRPNKLKFHVTGAELTRFNV---SGNQLHYNLALNLTVRNPNKRIGVYYDVIEASPYY 120

Query: 121 KNQRLATQWLPSFFQETKSTVVVSPNNFDGQKLMFLTSDEHVEFNAEKANGIYSIDVKFF 180
           K+QRL TQWL  F+Q  K+T V+SP +FDGQ+++F   D+  EFN E   GI+ +DVKF 
Sbjct: 121 KDQRLNTQWLTPFYQGHKTTTVLSP-HFDGQQIVFFAGDKLTEFNGETLAGIFEVDVKFR 180

Query: 181 FRLRMKSGQV-VLKFKPKVYCGLKVPLGSDIDPKSISLFSNTDCDFSF 220
            RLR+K G V + KFKPKV C LKVPL S  +P S + F  T CDF F
Sbjct: 181 LRLRLKVGAVRIGKFKPKVNCELKVPLKS--NPNSFTSFQTTRCDFDF 222

The following BLAST results are available for this feature:

BLAST of Cucsa.241720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	1.1e-33	39.13	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	3.3e-30	38.20	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]
SYP24_ARATH	2.5e-17	39.86	Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1	[more]

BLAST of Cucsa.241720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB18_CUCSA	4.8e-121	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779000 PE=4 SV=1	[more]
A0A0A0LBJ4_CUCSA	1.8e-54	52.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1	[more]
A0A0A0LGS5_CUCSA	5.3e-51	50.88	Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1	[more]
A0A059A5J9_EUCGR	1.5e-42	43.10	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02612 PE=4 SV=1	[more]
B9T2S1_RICCO	2.0e-42	41.67	Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1	[more]

BLAST of Cucsa.241720 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35980.1	6.2e-35	39.13	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06320.1	1.9e-31	38.20	NDR1/HIN1-like 3	[more]
AT3G11650.1	2.7e-30	34.85	NDR1/HIN1-like 2	[more]
AT2G35460.1	8.7e-29	34.76	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G32270.1	1.4e-18	39.86	syntaxin, putative	[more]

BLAST of Cucsa.241720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204062\|gb\|KGN59195.1\|	7.0e-121	100.00	hypothetical protein Csa_3G779000 [Cucumis sativus]	[more]
gi\|778684448\|ref\|XP_004136711.2\|	7.0e-121	100.00	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659085772\|ref\|XP_008443594.1\|	6.8e-108	90.41	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|659084480\|ref\|XP_008442909.1\|	1.3e-55	51.75	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|659084478\|ref\|XP_008442908.1\|	1.5e-54	53.07	PREDICTED: protein YLS9 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.241720.1	Cucsa.241720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 90..178 score: 1.
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 6..219 score: 4.5
None	No IPR available	PANTHER	PTHR31415:SF4	HARPIN-INDUCED PROTEIN-LIKE-RELATED	coord: 6..219 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.241720	Csa3G779000	Cucumber (Chinese Long) v2	cgycuB344
Cucsa.241720	CSPI03G35520	Wild cucumber (PI 183967)	cgycpiB360
Cucsa.241720	CmoCh06G005150	Cucurbita moschata (Rifu)	cgycmoB0681
Cucsa.241720	CsaV3_3G037840	Cucumber (Chinese Long) v3	cgycucB363

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.241720	Melon (DHL92) v3.6.1	cgymedB408
Cucsa.241720	Melon (DHL92) v3.6.1	cgymedB409
Cucsa.241720	Melon (DHL92) v3.6.1	cgymedB410
Cucsa.241720	Silver-seed gourd	carcgyB0282
Cucsa.241720	Silver-seed gourd	carcgyB0294
Cucsa.241720	Silver-seed gourd	carcgyB0481
Cucsa.241720	Silver-seed gourd	carcgyB0758
Cucsa.241720	Silver-seed gourd	carcgyB0923
Cucsa.241720	Cucumber (Chinese Long) v3	cgycucB365
Cucsa.241720	Cucumber (Chinese Long) v3	cgycucB366
Cucsa.241720	Watermelon (97103) v2	cgywmbB427
Cucsa.241720	Watermelon (97103) v2	cgywmbB425
Cucsa.241720	Wax gourd	cgywgoB489
Cucsa.241720	Wax gourd	cgywgoB484
Cucsa.241720	Wax gourd	cgywgoB487
Cucsa.241720	Cucumber (Gy14) v1	cgycgyB027
Cucsa.241720	Cucumber (Gy14) v1	cgycgyB110
Cucsa.241720	Cucumber (Gy14) v1	cgycgyB124
Cucsa.241720	Cucurbita maxima (Rimu)	cgycmaB0683
Cucsa.241720	Cucurbita maxima (Rimu)	cgycmaB0674
Cucsa.241720	Cucurbita maxima (Rimu)	cgycmaB0678
Cucsa.241720	Cucurbita maxima (Rimu)	cgycmaB0680
Cucsa.241720	Cucurbita maxima (Rimu)	cgycmaB0681
Cucsa.241720	Cucurbita moschata (Rifu)	cgycmoB0675
Cucsa.241720	Cucurbita moschata (Rifu)	cgycmoB0680
Cucsa.241720	Cucurbita moschata (Rifu)	cgycmoB0683
Cucsa.241720	Wild cucumber (PI 183967)	cgycpiB358
Cucsa.241720	Wild cucumber (PI 183967)	cgycpiB362
Cucsa.241720	Wild cucumber (PI 183967)	cgycpiB363
Cucsa.241720	Cucumber (Chinese Long) v2	cgycuB342
Cucsa.241720	Cucumber (Chinese Long) v2	cgycuB347
Cucsa.241720	Melon (DHL92) v3.5.1	cgymeB412
Cucsa.241720	Melon (DHL92) v3.5.1	cgymeB414
Cucsa.241720	Melon (DHL92) v3.5.1	cgymeB415
Cucsa.241720	Watermelon (Charleston Gray)	cgywcgB426
Cucsa.241720	Watermelon (Charleston Gray)	cgywcgB428
Cucsa.241720	Watermelon (97103) v1	cgywmB456
Cucsa.241720	Cucurbita pepo (Zucchini)	cgycpeB0640
Cucsa.241720	Cucurbita pepo (Zucchini)	cgycpeB0643
Cucsa.241720	Cucurbita pepo (Zucchini)	cgycpeB0644
Cucsa.241720	Cucurbita pepo (Zucchini)	cgycpeB0650
Cucsa.241720	Bottle gourd (USVL1VR-Ls)	cgylsiB395
Cucsa.241720	Bottle gourd (USVL1VR-Ls)	cgylsiB398
Cucsa.241720	Bottle gourd (USVL1VR-Ls)	cgylsiB402