Cucsa.240810 (gene) Cucumber (Gy14) v1

NameCucsa.240810
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDiacylglycerol kinase family protein
Locationscaffold02047 : 991412 .. 992253 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTAATGGCTTCTTTTGGGCTAGAAAGCCTGTTGTTGTTAATAATGATGGAGAAGCGCGTAAATCGACATCACTTGGTGTAAGAGATTCCTTCATTGTTACTATCTTATGTTATTTCCATTATCTACTAGCTGTTGATCAGTCTGTAACTTGTTCATATTATTTTCATGAATTTTTGCTATTGAATTCTTGGATTACATATATTATTGTGCCTACTTGCAGATTATTCCCTTGGGAACAGGTTCGGATTTTGCAAGAACATTTGGTTGGTAAGTGCACATTACTGCATTGTGCTTTTGTACGATGTGAGACTTTCAATTATCACTTCCTCCATGGGGTTAAGCAAACTTGGTTAACATTCTTTTAATTAGGAATAACAATCCTTTTGAAGCTGTGGACCATATAGCCAAAGGTATCCTTGTTTCACTCTTTTGTCTTCCCCTCTAATTTTTCTGTCGATGAAGTACTGTAAATGGCTCTGTTTGTTTACACAAACATTGCATTACCATTGGTAGTTCATGTAAGATATTCTGCTGGGTTGAGGAACCGAATTGATGTTGAAGTTGTCAATGAAGATAATGGGGAGAATCATTACTTTACAAATGTTGCAGACATTCATTTGTAAGGTTAATCTAAACAGTATCATTGATGCTAACCGACAAACTATGCTAAGTCAAGACATCTAATTATCTTATTGCATGGATCTTTTTGCAGAAGTGCAAAGGCTGGTTCTTATGCTGCTAGATACAAGAAATTTGGAAACTTATGCTATGTGATTGGTGCTTTGCAAGGCTTTATGGGACACCAAATTAGAGATTTTAAGACTAAGGTCAGCGTATAG

mRNA sequence

TGGTTAATGGCTTCTTTTGGGCTAGAAAGCCTGTTGTTGTTAATAATGATGGAGAAGCGCGTAAATCGACATCACTTGGTATTATTCCCTTGGGAACAGGTTCGGATTTTGCAAGAACATTTGGTTGGAATAACAATCCTTTTGAAGCTGTGGACCATATAGCCAAAGTTCATGTAAGATATTCTGCTGGGTTGAGGAACCGAATTGATGTTGAAGTTGTCAATGAAGATAATGGGGAGAATCATTACTTTACAAATGTTGCAGACATTCATTTAAGTGCAAAGGCTGGTTCTTATGCTGCTAGATACAAGAAATTTGGAAACTTATGCTATGTGATTGGTGCTTTGCAAGGCTTTATGGGACACCAAATTAGAGATTTTAAGACTAAGGTCAGCGTATAG

Coding sequence (CDS)

TGGTTAATGGCTTCTTTTGGGCTAGAAAGCCTGTTGTTGTTAATAATGATGGAGAAGCGCGTAAATCGACATCACTTGGTATTATTCCCTTGGGAACAGGTTCGGATTTTGCAAGAACATTTGGTTGGAATAACAATCCTTTTGAAGCTGTGGACCATATAGCCAAAGTTCATGTAAGATATTCTGCTGGGTTGAGGAACCGAATTGATGTTGAAGTTGTCAATGAAGATAATGGGGAGAATCATTACTTTACAAATGTTGCAGACATTCATTTAAGTGCAAAGGCTGGTTCTTATGCTGCTAGATACAAGAAATTTGGAAACTTATGCTATGTGATTGGTGCTTTGCAAGGCTTTATGGGACACCAAATTAGAGATTTTAAGACTAAGGTCAGCGTATAG

Protein sequence

VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRYSAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKVSV*
BLAST of Cucsa.240810 vs. Swiss-Prot
Match: LCKB2_ARATH (Sphingoid long-chain bases kinase 2, mitochondrial OS=Arabidopsis thaliana GN=LCKB2 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-41
Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFW  KPV   + GEA +ST+LG+IPLGTGSDFARTFGWNN+P EAV+ IA+     
Sbjct: 127 VNGFFWEGKPVGYLS-GEASRSTALGLIPLGTGSDFARTFGWNNDPCEAVERIAR----- 186

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             G+R+RIDV V++++  + HYF NVAD+HLSAKAG YA++YKKFGNLCYVIGALQ FMG
Sbjct: 187 --GMRSRIDVGVIDKEGKDLHYFINVADVHLSAKAGFYASKYKKFGNLCYVIGALQAFMG 246

Query: 121 HQIRDFKTKVS 132
           H  +D + +V+
Sbjct: 247 HHNQDMRIRVN 249

BLAST of Cucsa.240810 vs. TrEMBL
Match: A0A0A0K3Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G280850 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-53
Identity = 106/120 (88.33%), Postives = 108/120 (90.00%), Query Frame = 1

Query: 11  VVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV 70
           + V  DG   +     IIPLGTGSDFAR FGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV
Sbjct: 11  IAVRGDGTFHE-----IIPLGTGSDFARAFGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV 70

Query: 71  EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV 130
           EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV
Sbjct: 71  EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV 125

BLAST of Cucsa.240810 vs. TrEMBL
Match: M5WZY9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007544mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-41
Identity = 87/131 (66.41%), Postives = 104/131 (79.39%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFWA KPV  N+D E   ST+LG+IPLGTGSDFARTFGW N+P EA+D IAK     
Sbjct: 127 VNGFFWAGKPVT-NHDREVTHSTALGLIPLGTGSDFARTFGWKNDPHEAIDRIAK----- 186

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             G R+RIDV V++ ++GE HYF NVADIHLSAKAG YA+RYK+FGNLCYVIGAL+ F+G
Sbjct: 187 --GQRSRIDVGVISGEDGEPHYFVNVADIHLSAKAGYYASRYKRFGNLCYVIGALKAFVG 246

Query: 121 HQIRDFKTKVS 132
           H+ +D K KV+
Sbjct: 247 HRNQDLKIKVN 249

BLAST of Cucsa.240810 vs. TrEMBL
Match: B9RDX3_RICCO (Bmru protein, putative OS=Ricinus communis GN=RCOM_1616380 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFWA KPVV N++ E   ST+LG+IPLGTGSDFART+GW N+P+EAVD I K     
Sbjct: 131 VNGFFWAGKPVV-NHNKEVAHSTALGLIPLGTGSDFARTWGWKNDPYEAVDRIVK----- 190

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             GLR+RIDV ++  ++ E HYF NVADIHLSAKAG YA+RYK+FGNLCYVIGALQ FMG
Sbjct: 191 --GLRSRIDVGIITGESEEAHYFINVADIHLSAKAGYYASRYKRFGNLCYVIGALQAFMG 250

Query: 121 HQIRDFKTKV 131
           H   D + KV
Sbjct: 251 HNNHDLRIKV 252

BLAST of Cucsa.240810 vs. TrEMBL
Match: A0A078CD69_BRANA (BnaA05g05360D protein OS=Brassica napus GN=BnaA05g05360D PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.7e-40
Identity = 85/131 (64.89%), Postives = 101/131 (77.10%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFW  KPV  N DGEA  S +LG+IPLGTGSDFARTFGW N+P EAV+ IAK     
Sbjct: 127 VNGFFWEGKPVS-NLDGEASHSAALGLIPLGTGSDFARTFGWRNDPCEAVERIAK----- 186

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             G+R+RIDV V++ +  + HYF NVAD+HLSAKAG YA++YKKFG+LCYVIGALQ FMG
Sbjct: 187 --GVRSRIDVGVIDHEESDLHYFINVADVHLSAKAGFYASKYKKFGSLCYVIGALQAFMG 246

Query: 121 HQIRDFKTKVS 132
           H  RD + KV+
Sbjct: 247 HHNRDMRIKVN 249

BLAST of Cucsa.240810 vs. TrEMBL
Match: A0A067JX76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14342 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.4e-40
Identity = 84/131 (64.12%), Postives = 102/131 (77.86%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFWA KPV+ N++ EA  ST+LG+IPLGTGSDFART+GW N+P+EA+D I +     
Sbjct: 113 VNGFFWAGKPVI-NHNREAAHSTALGLIPLGTGSDFARTWGWKNDPYEAIDRIIR----- 172

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             GLR+ IDV V+  +  E+HYF NVADIHLSAKAG YA+RYK+FGNLCYVIGALQ FMG
Sbjct: 173 --GLRSGIDVGVITGEGEESHYFINVADIHLSAKAGYYASRYKRFGNLCYVIGALQAFMG 232

Query: 121 HQIRDFKTKVS 132
           H   D + KV+
Sbjct: 233 HSNMDLRIKVN 235

BLAST of Cucsa.240810 vs. TAIR10
Match: AT2G46090.1 (AT2G46090.1 Diacylglycerol kinase family protein)

HSP 1 Score: 170.2 bits (430), Expect = 8.3e-43
Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFW  KPV   + GEA +ST+LG+IPLGTGSDFARTFGWNN+P EAV+ IA+     
Sbjct: 127 VNGFFWEGKPVGYLS-GEASRSTALGLIPLGTGSDFARTFGWNNDPCEAVERIAR----- 186

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             G+R+RIDV V++++  + HYF NVAD+HLSAKAG YA++YKKFGNLCYVIGALQ FMG
Sbjct: 187 --GMRSRIDVGVIDKEGKDLHYFINVADVHLSAKAGFYASKYKKFGNLCYVIGALQAFMG 246

Query: 121 HQIRDFKTKVS 132
           H  +D + +V+
Sbjct: 247 HHNQDMRIRVN 249

BLAST of Cucsa.240810 vs. NCBI nr
Match: gi|659116624|ref|XP_008458170.1| (PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-61
Identity = 119/130 (91.54%), Postives = 121/130 (93.08%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFWA KP+V NNDGEARKST+LGIIPLGTGSDFARTFGWNNNPFEAVD IAKVHVRY
Sbjct: 129 VNGFFWAGKPIV-NNDGEARKSTALGIIPLGTGSDFARTFGWNNNPFEAVDRIAKVHVRY 188

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
           SAGLR RIDV VVNEDNGENHYF NVADIHLSAKAG YAARYKKFGNLCYVIGALQGFMG
Sbjct: 189 SAGLRTRIDVGVVNEDNGENHYFANVADIHLSAKAGFYAARYKKFGNLCYVIGALQGFMG 248

Query: 121 HQIRDFKTKV 131
           HQ RDFK KV
Sbjct: 249 HQNRDFKIKV 257

BLAST of Cucsa.240810 vs. NCBI nr
Match: gi|659116626|ref|XP_008458171.1| (PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-55
Identity = 112/130 (86.15%), Postives = 114/130 (87.69%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFWA KP+V NNDGEARKST+LGIIPLGTGSDFARTFGWNNNPFEAVD IAK     
Sbjct: 129 VNGFFWAGKPIV-NNDGEARKSTALGIIPLGTGSDFARTFGWNNNPFEAVDRIAK----- 188

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             GLR RIDV VVNEDNGENHYF NVADIHLSAKAG YAARYKKFGNLCYVIGALQGFMG
Sbjct: 189 --GLRTRIDVGVVNEDNGENHYFANVADIHLSAKAGFYAARYKKFGNLCYVIGALQGFMG 248

Query: 121 HQIRDFKTKV 131
           HQ RDFK KV
Sbjct: 249 HQNRDFKIKV 250

BLAST of Cucsa.240810 vs. NCBI nr
Match: gi|778730292|ref|XP_011659752.1| (PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 106/120 (88.33%), Postives = 108/120 (90.00%), Query Frame = 1

Query: 11  VVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV 70
           + V  DG   +     IIPLGTGSDFAR FGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV
Sbjct: 12  IAVRGDGTFHE-----IIPLGTGSDFARAFGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV 71

Query: 71  EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV 130
           EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV
Sbjct: 72  EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV 126

BLAST of Cucsa.240810 vs. NCBI nr
Match: gi|700189172|gb|KGN44405.1| (hypothetical protein Csa_7G280850 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 106/120 (88.33%), Postives = 108/120 (90.00%), Query Frame = 1

Query: 11  VVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV 70
           + V  DG   +     IIPLGTGSDFAR FGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV
Sbjct: 11  IAVRGDGTFHE-----IIPLGTGSDFARAFGWNNNPFEAVDHIAKVHVRYSAGLRNRIDV 70

Query: 71  EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV 130
           EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV
Sbjct: 71  EVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMGHQIRDFKTKV 125

BLAST of Cucsa.240810 vs. NCBI nr
Match: gi|645254327|ref|XP_008232990.1| (PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Prunus mume])

HSP 1 Score: 176.8 bits (447), Expect = 2.5e-41
Identity = 87/131 (66.41%), Postives = 104/131 (79.39%), Query Frame = 1

Query: 1   VNGFFWARKPVVVNNDGEARKSTSLGIIPLGTGSDFARTFGWNNNPFEAVDHIAKVHVRY 60
           VNGFFWA KPV  N+D E   ST+LG+IPLGTGSDFARTFGW N+P EA+D IAK     
Sbjct: 127 VNGFFWAGKPVT-NHDREVTHSTALGLIPLGTGSDFARTFGWKNDPHEAIDRIAK----- 186

Query: 61  SAGLRNRIDVEVVNEDNGENHYFTNVADIHLSAKAGSYAARYKKFGNLCYVIGALQGFMG 120
             G R+RIDV V++ ++GE HYF NVADIHLSAKAG YA+RYK+FGNLCYVIGAL+ F+G
Sbjct: 187 --GQRSRIDVGVISGEDGEPHYFVNVADIHLSAKAGYYASRYKRFGNLCYVIGALKAFVG 246

Query: 121 HQIRDFKTKVS 132
           H+ +D K KV+
Sbjct: 247 HRNQDLKIKVN 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LCKB2_ARATH1.5e-4163.36Sphingoid long-chain bases kinase 2, mitochondrial OS=Arabidopsis thaliana GN=LC... [more]
Match NameE-valueIdentityDescription
A0A0A0K3Y3_CUCSA1.2e-5388.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G280850 PE=4 SV=1[more]
M5WZY9_PRUPE1.8e-4166.41Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007544mg PE=4 SV=1[more]
B9RDX3_RICCO1.5e-4066.15Bmru protein, putative OS=Ricinus communis GN=RCOM_1616380 PE=4 SV=1[more]
A0A078CD69_BRANA5.7e-4064.89BnaA05g05360D protein OS=Brassica napus GN=BnaA05g05360D PE=4 SV=1[more]
A0A067JX76_JATCU7.4e-4064.12Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14342 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46090.18.3e-4363.36 Diacylglycerol kinase family protein[more]
Match NameE-valueIdentityDescription
gi|659116624|ref|XP_008458170.1|1.3e-6191.54PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial isoform X1 [Cucumi... [more]
gi|659116626|ref|XP_008458171.1|2.4e-5586.15PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial isoform X2 [Cucumi... [more]
gi|778730292|ref|XP_011659752.1|1.7e-5388.33PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial-like [Cucumis sati... [more]
gi|700189172|gb|KGN44405.1|1.7e-5388.33hypothetical protein Csa_7G280850 [Cucumis sativus][more]
gi|645254327|ref|XP_008232990.1|2.5e-4166.41PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001206Diacylglycerol_kinase_cat_dom
IPR016064NAD/diacylglycerol_kinase_sf
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0006671 phytosphingosine metabolic process
biological_process GO:0009409 response to cold
cellular_component GO:0005739 mitochondrion
molecular_function GO:0016301 kinase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.240810.1Cucsa.240810.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001206Diacylglycerol kinase, catalytic domainPFAMPF00781DAGK_catcoord: 18..59
score: 4.
IPR001206Diacylglycerol kinase, catalytic domainPROFILEPS50146DAGKcoord: 1..77
score: 1
IPR016064NAD kinase/diacylglycerol kinase-like domainunknownSSF111331NAD kinase/diacylglycerol kinase-likecoord: 20..127
score: 3.92
NoneNo IPR availablePANTHERPTHR12358SPHINGOSINE KINASEcoord: 1..132
score: 2.8
NoneNo IPR availablePANTHERPTHR12358:SF43SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIALcoord: 1..132
score: 2.8

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.240810Csa7G280850Cucumber (Chinese Long) v2cgycuB348
Cucsa.240810CsaV3_7G024010Cucumber (Chinese Long) v3cgycucB367
The following gene(s) are paralogous to this gene:

None