Cucsa.240240 (gene) Cucumber (Gy14) v1

NameCucsa.240240
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold02047 : 189188 .. 189855 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCTCGACTTACGAAAGAAAATTATAGCAGCTGGTGTATTCGAATGAAAGTTCTACTTGGTTCACAAGATGTGTGAGACATTGTTAATAATGGTTATGAAGAACCAAAAAGTGATACAACTTTGAGTCAAACTCAACGAGAAAGTTTACAAAATACAAAGAAAAGAGATCAAAAGGCTCTCACCATCATTCATCAAGTCATTGATGATTCAAATTTTGAGAAAATTTCTGGAGCAACTACTGCACATCAAACATGAAATTTTTTGGAGAAAACATATAAAGGAGTAGATCGAGTCAAGAAGATTTGCCTTCAAAAATTGAGAGGTAATTATGAATCACTGCATATGAAAGAGTCTGAATCGGTTTCATATTATACTTTAAGATTGTTAGCAGTAGTAAATGAAATGAAAAGATATGGTGAGACAATAAGTGATGAGCAAGTAGTAGACAAGATACTTCGATCATTGGATGAAAAATTCAATTTCATTGTTGTAGCTATTGAAGAATCAAAGGATTTGAGTACAATGTCCATTGATCAACTTATGGGTTCTTTACAAGCCCATGAAAAAAAGATTCTTAAGAACAAGCAGACGACTGAGCAACTTTTTCAGTCAAAGTTGAATTTCAAAGACAAAGAAGACAACCTAGAAAAAGGCAATCTTGTATGA

mRNA sequence

tacctcgacttacgaaagaaaattatagcagctggtgtattcgaatgaaagttctacttggttcacaagatgttgatacaactttgagtcaaactcaacgagaaagtttacaaaatacaaagaaaagagatcaaaaggctctcaccatcattcatcaaaaaacatataaaggagtagatcgagtcaagaagatttgccttcaaaaattgagaggtaattatgaatcactgcatatgaaagagtctgaatcggtttcatattatactttaagattgttagcagtagtaaatgaaatgaaaagatatggtgagacaataagtgatgagcaagtagtagacaagatacttcgatcattggatgaaaaattcaatttcattgttgtagctattgaagaatcaaaggatttgagtacaatgtccattgatcaacttatgggttctttacaagcccatgaaaaaaagattcttaagaacaagcagacgactgagcaactttttcagtcaaagttgaatttcaaagacaaagaagacaacctagaaaaaggcaatcttgtatga

Coding sequence (CDS)

TACCTCGACTTACGAAAGAAAATTATAGCAGCTGGTGTATTCGAATGAAAGTTCTACTTGGTTCACAAGATGTTGATACAACTTTGAGTCAAACTCAACGAGAAAGTTTACAAAATACAAAGAAAAGAGATCAAAAGGCTCTCACCATCATTCATCAAAAAACATATAAAGGAGTAGATCGAGTCAAGAAGATTTGCCTTCAAAAATTGAGAGGTAATTATGAATCACTGCATATGAAAGAGTCTGAATCGGTTTCATATTATACTTTAAGATTGTTAGCAGTAGTAAATGAAATGAAAAGATATGGTGAGACAATAAGTGATGAGCAAGTAGTAGACAAGATACTTCGATCATTGGATGAAAAATTCAATTTCATTGTTGTAGCTATTGAAGAATCAAAGGATTTGAGTACAATGTCCATTGATCAACTTATGGGTTCTTTACAAGCCCATGAAAAAAAGATTCTTAAGAACAAGCAGACGACTGAGCAACTTTTTCAGTCAAAGTTGAATTTCAAAGACAAAGAAGACAACCTAGAAAAAGGCAATCTTGTATGA

Protein sequence

PRLTKENYSSWCIRMKVLLGSQDVDTTLSQTQRESLQNTKKRDQKALTIIHQKTYKGVDRVKKICLQKLRGNYESLHMKESESVSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQLMGSLQAHEKKILKNKQTTEQLFQSKLNFKDKEDNLEKGNLV*
BLAST of Cucsa.240240 vs. TrEMBL
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_033991 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-38
Identity = 92/213 (43.19%), Postives = 132/213 (61.97%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQDV-------------DTTLSQTQRESLQNTKKRDQKAL 60
           P LTK NY +W +RM  LLG+ DV               +LSQ Q++SL++++KRD+KAL
Sbjct: 11  PMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKAL 70

Query: 61  TIIHQK------------------------TYKGVDRVKKICLQKLRGNYESLHMKESES 120
            +I+Q                         +YKG D+VKK+ LQ LRG +E+LHMKE E 
Sbjct: 71  CLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGEL 130

Query: 121 VSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQL 177
           VS Y  R+L V N +KR GE + D ++++KILRSLD KF  IV   EE+KDL  MSI+QL
Sbjct: 131 VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQL 190

BLAST of Cucsa.240240 vs. TrEMBL
Match: A0A151R357_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_041812 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-38
Identity = 92/213 (43.19%), Postives = 132/213 (61.97%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQDV-------------DTTLSQTQRESLQNTKKRDQKAL 60
           P LTK NY +W +RM  LLG+ DV               +LSQ Q++SL++++KRD+KAL
Sbjct: 11  PMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKAL 70

Query: 61  TIIHQK------------------------TYKGVDRVKKICLQKLRGNYESLHMKESES 120
            +I+Q                         +YKG D+VKK+ LQ LRG +E+LHMKE E 
Sbjct: 71  CLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGEL 130

Query: 121 VSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQL 177
           VS Y  R+L V N +KR GE + D ++++KILRSLD KF  IV   EE+KDL  MSI+QL
Sbjct: 131 VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQL 190

BLAST of Cucsa.240240 vs. TrEMBL
Match: A0A151TPU3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022691 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-38
Identity = 92/213 (43.19%), Postives = 132/213 (61.97%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQDV-------------DTTLSQTQRESLQNTKKRDQKAL 60
           P LTK NY +W +RM  LLG+ DV               +LSQ Q++SL++++KRD+KAL
Sbjct: 11  PMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKAL 70

Query: 61  TIIHQK------------------------TYKGVDRVKKICLQKLRGNYESLHMKESES 120
            +I+Q                         +YKG D+VKK+ LQ LRG +E+LHMKE E 
Sbjct: 71  CLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGEL 130

Query: 121 VSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQL 177
           VS Y  R+L V N +KR GE + D ++++KILRSLD KF  IV   EE+KDL  MSI+QL
Sbjct: 131 VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQL 190

BLAST of Cucsa.240240 vs. TrEMBL
Match: C0JJI1_SOYBN (Truncated copia-type polyprotein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.4e-38
Identity = 91/178 (51.12%), Postives = 126/178 (70.79%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQD----VDTTLSQTQRESLQNTKKRDQKALTIIHQKTYK 60
           PRLTKENY +WC RMK LLGSQD    V+  L +   E + N      K    I + + +
Sbjct: 12  PRLTKENYDNWCRRMKALLGSQDAWEIVEKGLDEAMFELVSNATT--SKEAWEILKTSLE 71

Query: 61  GVDRVKKICLQKLRGNYESLHMKESESVSYYTLRLLAVVNEMKRYGETISDEQVVDKILR 120
           GVD+VKK+ LQ LR  +ESLHMKESES+S +  ++LA+VN+MKRYGE + D +VV+KILR
Sbjct: 72  GVDKVKKVRLQTLRREFESLHMKESESISDFGNKVLAIVNQMKRYGENMEDVRVVEKILR 131

Query: 121 SLDEKFNFIVVAIEESKDLSTMSIDQLMGSLQAHEKKI-LKNKQTTEQLFQSKLNFKD 174
           SL  KF+++V AIEESKDL +++IDQLMGSLQA+E+    ++ +  EQ+ ++K + K+
Sbjct: 132 SLIAKFDYVVCAIEESKDLDSITIDQLMGSLQAYEEGFNRRHDEPLEQVLKAKASLKE 187

BLAST of Cucsa.240240 vs. TrEMBL
Match: A0A0S3SYB8_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.09G144000 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-37
Identity = 91/213 (42.72%), Postives = 132/213 (61.97%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQDVDT-------------TLSQTQRESLQNTKKRDQKAL 60
           P LTK NY +W +RM  LLG+ DV               +LSQ Q+++L++++KRD+KAL
Sbjct: 11  PMLTKSNYDNWSLRMIALLGAHDVWEVVEKGHIEPENLESLSQAQKDNLRDSRKRDKKAL 70

Query: 61  TIIHQK------------------------TYKGVDRVKKICLQKLRGNYESLHMKESES 120
            +I+Q                         +YKG D+VKK+ LQ LRG +E+LHMKE E 
Sbjct: 71  CLIYQGLDEDTFEKISGVKSAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGEL 130

Query: 121 VSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQL 177
           VS Y  R+L V N +KR GE + D ++++KILRSLD KF  IV   EE+KDL  MSI+QL
Sbjct: 131 VSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQL 190

BLAST of Cucsa.240240 vs. TAIR10
Match: AT1G48720.1 (AT1G48720.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1

Query: 1  PRLTKENYSSWCIRMKVLLGSQDV-------------DTTLSQTQRESLQNTKKRDQKAL 53
          P LTK NY +W +RMK +LG+ DV             + +LSQTQ++ L++++KRD+KAL
Sbjct: 11 PVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKAL 70

BLAST of Cucsa.240240 vs. NCBI nr
Match: gi|659112423|ref|XP_008456214.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like, partial [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 2.7e-73
Identity = 157/220 (71.36%), Postives = 169/220 (76.82%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQDV-------------DTTLSQTQRESLQNTKKRDQKAL 60
           PRLTKENYSSWCIRMK LLGSQDV             D +L+Q QRE+LQNT+K+DQKAL
Sbjct: 13  PRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDASLNQAQREALQNTRKKDQKAL 72

Query: 61  TIIHQ------------------------KTYKGVDRVKKICLQKLRGNYESLHMKESES 120
           TIIHQ                         TYKGV R+KK+ LQKLRG+YESLHMKESES
Sbjct: 73  TIIHQAIDDNNFEKISGATTAYQAWKILENTYKGVVRIKKVRLQKLRGDYESLHMKESES 132

Query: 121 VSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQL 180
           VS YT RLLAVVNEMKR+GETISDEQVV+KILRSLDEKFNFIVVAIEESKDLSTMS DQ 
Sbjct: 133 VSDYTSRLLAVVNEMKRFGETISDEQVVEKILRSLDEKFNFIVVAIEESKDLSTMSTDQF 192

Query: 181 MGSLQAHEKKIL-KNKQTTEQLFQSKLNFKDKEDNLEKGN 183
           MGSLQAHE+K+L KNKQ TEQLFQSKL  KDKEDNLEKGN
Sbjct: 193 MGSLQAHEEKLLKKNKQMTEQLFQSKLKLKDKEDNLEKGN 232

BLAST of Cucsa.240240 vs. NCBI nr
Match: gi|672198831|ref|XP_008777443.1| (PREDICTED: uncharacterized protein LOC103697381 [Phoenix dactylifera])

HSP 1 Score: 212.2 bits (539), Expect = 7.5e-52
Identity = 109/201 (54.23%), Postives = 143/201 (71.14%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQDV-------------DTTLSQTQRESLQNTKKRDQKAL 60
           PR TK+NY +WCIRMK +LGSQD+             + +L+  Q+ESLQ T+K+D+KA+
Sbjct: 11  PRFTKDNYENWCIRMKAILGSQDLWKIVDKGYMESENEDSLTPAQKESLQATRKKDRKAI 70

Query: 61  TIIHQ------------------------KTYKGVDRVKKICLQKLRGNYESLHMKESES 120
            IIHQ                         +Y+GVD+VKKICLQ LRG +E+LHMKESES
Sbjct: 71  MIIHQCLDDGMLQRVANATSSKQTWEILQNSYQGVDKVKKICLQSLRGEFEALHMKESES 130

Query: 121 VSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQL 165
           +S Y+ R+L VVN+++RYGE +SD +V++KILRSLD KFNFIVVAIEESKDL +M+IDQL
Sbjct: 131 ISDYSSRVLTVVNQLRRYGENVSDTRVIEKILRSLDPKFNFIVVAIEESKDLDSMTIDQL 190

BLAST of Cucsa.240240 vs. NCBI nr
Match: gi|672201192|ref|XP_008778073.1| (PREDICTED: uncharacterized protein LOC103697910 [Phoenix dactylifera])

HSP 1 Score: 211.8 bits (538), Expect = 9.9e-52
Identity = 110/218 (50.46%), Postives = 150/218 (68.81%), Query Frame = 1

Query: 1   PRLTKENYSSWCIRMKVLLGSQDV-------------DTTLSQTQRESLQNTKKRDQKAL 60
           PR TK+N  +WC+ MK +LGSQD+             + +L+  Q+ESLQ T K+D+KA+
Sbjct: 11  PRFTKDNNENWCVCMKAILGSQDLWEIIDKGYTKSENEDSLTLAQKESLQATGKKDRKAI 70

Query: 61  TIIHQ------------------------KTYKGVDRVKKICLQKLRGNYESLHMKESES 120
            IIHQ                          Y+GVD+VKKICLQ LRG +E+LHMKES+S
Sbjct: 71  MIIHQCLDDGMLQRVANATSSKQTWEILQNFYQGVDKVKKICLQSLRGEFEALHMKESKS 130

Query: 121 VSYYTLRLLAVVNEMKRYGETISDEQVVDKILRSLDEKFNFIVVAIEESKDLSTMSIDQL 180
           +S Y+ R+L  VN+++RY + +SD +V++KILRSLD KFNFIVVAIEESKDL +M+IDQL
Sbjct: 131 ISDYSSRVLTFVNQLRRYRKNVSDTRVIEKILRSLDPKFNFIVVAIEESKDLDSMTIDQL 190

Query: 181 MGSLQAHEKKILKNKQTTEQLFQSKLNFKDKEDNLEKG 182
           MGSLQAHE+K++K ++T EQ+ Q+K++ K+KED   KG
Sbjct: 191 MGSLQAHEEKVVKKQETLEQMLQTKVSLKEKEDRSWKG 228

BLAST of Cucsa.240240 vs. NCBI nr
Match: gi|778708543|ref|XP_011656230.1| (PREDICTED: uncharacterized protein LOC105435682 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 6.0e-49
Identity = 107/127 (84.25%), Postives = 115/127 (90.55%), Query Frame = 1

Query: 55  YKGVDRVKKICLQKLRGNYESLHMKESESVSYYTLRLLAVVNEMKRYGETISDEQVVDKI 114
           YKGVDRVKK+ LQKL  +YESLHMKESESVS YT RLL VVNEMKRYGETISDEQVV+KI
Sbjct: 2   YKGVDRVKKVRLQKLSDDYESLHMKESESVSDYTSRLLGVVNEMKRYGETISDEQVVEKI 61

Query: 115 LRSLDEKFNFIVVAIEESKDLSTMSIDQLMGSLQAHEKKIL-KNKQTTEQLFQSKLNFKD 174
           LRSLDEK NFIVVAIEESKDLSTMSIDQLMGSLQ HE+K+L KNKQTT+QL QS LN KD
Sbjct: 62  LRSLDEKLNFIVVAIEESKDLSTMSIDQLMGSLQVHEEKLLKKNKQTTKQLLQSNLNLKD 121

Query: 175 KEDNLEK 181
           K++NLEK
Sbjct: 122 KKNNLEK 128

BLAST of Cucsa.240240 vs. NCBI nr
Match: gi|659092965|ref|XP_008447316.1| (PREDICTED: uncharacterized protein LOC103489787 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-48
Identity = 105/129 (81.40%), Postives = 114/129 (88.37%), Query Frame = 1

Query: 55  YKGVDRVKKICLQKLRGNYESLHMKESESVSYYTLRLLAVVNEMKRYGETISDEQVVDKI 114
           YKGVDR K++ L+KLRG+YESLHMKESESVS YT  LLAVVNEMKR+GETI DEQVV+KI
Sbjct: 2   YKGVDRFKRVRLKKLRGDYESLHMKESESVSDYTSGLLAVVNEMKRFGETIGDEQVVEKI 61

Query: 115 LRSLDEKFNFIVVAIEESKDLSTMSIDQLMGSLQAHEKKIL-KNKQTTEQLFQSKLNFKD 174
            RSLDE FNFIVVAIEE KDLSTMSIDQLM SLQAHE+K+L KNKQ T QLFQSKL  KD
Sbjct: 62  FRSLDENFNFIVVAIEELKDLSTMSIDQLMASLQAHEEKLLKKNKQMTAQLFQSKLTLKD 121

Query: 175 KEDNLEKGN 183
           K+DNLEKGN
Sbjct: 122 KKDNLEKGN 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A151RPT4_CAJCA5.6e-3843.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151R357_CAJCA5.6e-3843.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TPU3_CAJCA5.6e-3843.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
C0JJI1_SOYBN7.4e-3851.12Truncated copia-type polyprotein OS=Glycine max PE=4 SV=1[more]
A0A0S3SYB8_PHAAN2.8e-3742.72Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.09... [more]
Match NameE-valueIdentityDescription
AT1G48720.11.1e-0843.08 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112423|ref|XP_008456214.1|2.7e-7371.36PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like, partial [Cucumis melo... [more]
gi|672198831|ref|XP_008777443.1|7.5e-5254.23PREDICTED: uncharacterized protein LOC103697381 [Phoenix dactylifera][more]
gi|672201192|ref|XP_008778073.1|9.9e-5250.46PREDICTED: uncharacterized protein LOC103697910 [Phoenix dactylifera][more]
gi|778708543|ref|XP_011656230.1|6.0e-4984.25PREDICTED: uncharacterized protein LOC105435682 [Cucumis sativus][more]
gi|659092965|ref|XP_008447316.1|3.9e-4881.40PREDICTED: uncharacterized protein LOC103489787 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.240240.1Cucsa.240240.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..151
score: 7.0
NoneNo IPR availablePANTHERPTHR11439:SF173SUBFAMILY NOT NAMEDcoord: 1..151
score: 7.0
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 53..153
score: 6.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.240240CmoCh11G011470Cucurbita moschata (Rifu)cgycmoB0673
The following gene(s) are paralogous to this gene:

None