Cucsa.239280 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.239280
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	LINE-1 reverse transcriptase like
Location	scaffold02046 : 149419 .. 152146 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGACACAAATAAGTTATCGCCATCTGTCACTGAAACACTAAAAGGTGGATACTCTTTATCTGTAAAATGCATCACATTATGGAGAAAAACTTGCTGCCTTACTAATGTGTATGGTCCTACTGATTATAAGGACAGGAAATTTGTATGGCCTGGACTACTAATTCTCTCGGGTATGGAAGCTTGGTGTTTTGGAGGTGAATTCAACATCACAAGATGGGTGCATGAAAGATTTCCACTAGGGAGAATAACTAGAGGCATGCGGCTGTTTAATAACTTCCTTGAAAAAGCTTAACTGTTGGAAATTCCCCATGGAAATGACAGGTTCACTTGGTCACGGGAAGGGGCTTCAGTTGTAAGATTAGTCTTGGACAGATTTGTCATTAACAAGGCTTGGGATGATGAATTCGCAAACATAAGAGCTTCTAGGCAAGCTTGTTTATTCTCTGATCATTTTCCCTTATTTCTTGAAGCTGGATCAGATTTTGCAACAGCTGGTTGCTCGACAAAGACTGATTTGGCAGTTGAAAGAGCATGGATTAACAGTGGTTCAGAAGGCTGGGCATATTTTGTTCTTAATGCCAAGTTGAGAAGGGTTGAACTTGCAGTTAAAGATTGGGTGGCTGAATTCTAGAAAAATCAAATAAGAAGAGAAGAGCTGACTCAAGAAATTGAAAGTGGGATACTTTGGGAGCCAACCAGCCAACCAACTCCTTAGAGGATGAGAGCGCTAGATTCTTCCACAGATTTCTTGCAACTCAAAAAaGGAAGAACCTGATTACTGAGTACGATAATGACTTTGGGGAGCCAACCAGCCAACCAGCCAACCAACTCCTTTAGAGAAATTGAAAGCTTAATCTGGAGATTTATACTAGGCTCTTCCCTGAAAGCTCGATTCCGGGATGTTTACCCACAAACTTTGACTGGCCTTGTGTAATTCCCTTCTAGAATGTTATTATCACAGCAAAGTTCTCCAAATTGGAAATTAAAGCAGCTGTTAACTTCCTTGGAAAGTGTAAAGCCCCATGTGAATTCCTAATTAAATATTGGAATTTAGTCAAGTTGAACTTCATTCAGTTTTCGACGATTTTCATGGAAATATAAAACGAAATGCTTGTGTTCAGGAGGATTTCATTTGCTTAATCCAGAAAAAaGAAAATGCAGTGTTTATCAAAGATTTCAGGCCAATCATTACGACCTTAACCTACAAGGTTATTGCCAAGGTGCTAGCCGAGAGACTTAAAAAGGTAACGCTGTGCATCATTGCCCCCTCGCAAAGTGCTTTCATAGAAGGAAGGAAAATACTTGATCCGATCCTTGTTGCTAATGAAATTGTTGAGGAATGGGAGTGAGAAGGATGGAATATTATGAGTAAGAAAAAaGAATGGGCTGGCTTCTCAAGCTTGATCTAGAAAAAGCTTTTGACAAGGTTGATTGAGACTTCCTTAAAAAAATCATGAGTAAGAAGTTTGACCACAAGTGGATTGAATGGATCTTGGGTTGTGTTAAGAACCTGAGATACTCAATATTCCTCAATAGAAGACCGGGAGGAAGAACGTTGGCTACAAAGGTTATCAGGCAGGGTGACCCCCTTTCGTCGTTCCTCTTCATACTTGTAAGTGAAGTTCTTGATGCTCTAATTGAAAATCTACATCAGAATGGCCTTTATGAAGGTTTTGTAGTGGGAAAGGACAAGATTCATGTTCCAATCCTTCAATTTGCAGATTACACCCTACTTTTTGCAAATGCGAAAGCAACATGTTAGTAACTTTGAAACAGACAATAGAGCTTTTTGAATGGTGCTCCTGGCAAAAAGTGAACTGGGACAAGTCGGCCCTTTTTAGATAAACGTGGAAGAGATATCCTCTTTTTGGCAACCAGTTCTTGATAAAATTCAACTAAAGTTAGATGAATGGAAGAGGTTTAACCTCTCGAGAGGGGGGGAGCTATGCTTTGTAAGTCTATATTCCTAATGCCAGAAGAAGTCACTTCAAAATTGGAAAGAATCCTGAGGAATTTCTTTTGGAAGGGAGGGCAGCAAATTAAACTACCTTGTTAGTTAGAAAGTGGTCAACAAATTCTTGATGGATGGTGGCCCTTGGCCTTGGTGGCTTCAAATCTAAAAACTTGGCGCTTCTAGCCAAATGGGAGTGGAGATACATGGAAGAAGACTCTCCGTGGTGCAAGGTTATCAGGAGTATCCATGACAAAGATTCCTTTAATTGGCATACTGCCAGAAAAGAAGTCAAATGCGTGAGAAGCCCTTGGGTTATTATTTCGAGAACTTGGTTGAAAATGGAATCTTTAGCCACCTTTAGCTTGGGAATGGGAGAAGTATAGCTTTTTGGTTAGATCACTTGGGGGAGTGACCATTTCATCTAGCCTTTCCACAGTTGTTCAGAATAGCTTTACTCCCAAATGTTTCGGTTGCTGATCGCTGAGACTCTGCATTATCATCTTGGTCCCTAGTCTTCTGCAGTTTGCTAAAAGATGAAGAGATTTCAGACTTCCAAGTACTGCTTCGAAAATTAGCATCAAGAAATATTTCTGAAGTTCAAGACAGACAAATATGGTCACCTGGCGGCAGCAGAAAATTTACAGTAAAGTCCCTTACTCTTCACCTGTCTGCTTCCTCCCCTCTGGATAAATTCCTCTATACGGCCCTTTGGAAGTCTAATAGCCCAAGAAGGGTTAATATCTTCATTTGGATCACCCTGATAGGTTAA

mRNA sequence

atgtgggacacaaataagttatcgccatctgtcactgaaacactaaaaggtggatactctttatctgtaaaatgcatcacattatggagaaaaacttgctgccttactaatgtgtatggtcctactgattataaggacaggaaatttgtatggcctggactactaattctctcgggtatggaagcttggtgttttggaggtgaattcaacatcacaagatgggtgcatgaaagatttccactagggagaataactagaggcatgcggctgttcacttggtcacgggaaggggcttcagttgtaagattagtcttggacagatttgtcattaacaaggcttgggatgatgaattcgcaaacataagagcttctaggcaagcttgtttattctctgatcattttcccttatttcttgaagctggatcagattttgcaacagctggttgctcgacaaagactgatttggcagttgaaagagcatggattaacagtggttcagaaggctgggcatattttgttcttaatgccaagttgagaagggttgaacttgcagttaaagattggaatgttattatcacagcaaagttctccaaattggaaattaaagcagctgttaacttccttggaaagtgtaaagccccATTTTTCGACGATTTTCATGGAAATATAAAACGAAATGCTTGTGTTCAGGAGGATTTCAtttgcttaatccagaaaaaagaaaatgcagtgtttatcaaagatttcaggccaatcattacgaccttaacctacaaggttattgccaaggtgctagccgagagacttaaaaaggtaacgctgtgcatcattgccccctcgcaaagtgctttcatagaaggaaggaaaatacttgatccgatccttgttgctaatgaaattaacctgagatactcaatattcctcaatagaagaccgggaggaagaacgttggctacaaaggttatcaggcagggtgaccccctttcgtcgttcctcttcatacttgtaagtgaagttcttgatgctctaattgaaaatctacatcagaatggcctttatgaaggttttgtagtgggaaaggacaagattcatgttccaatccttcaatttgcagattacaccctactttttgcaaatgcgaaagcaacatccaaatgggagtggagatacatggaagaagactctccgtggtgcaaggttatcaggagtatccatgacaaagattcctttaattggcatactgccagaaaagaagtcaaatgcgtgagaagcccttgggttattatttcgagaacttgtttgctaaaagatgaagagatttcagacttccaagtactgcttcgaaaattagcatcaagaaatatttctgaagttcaagacagacaaatatggtcacctggcggcagcagaaaatttacagtaaagtcccttactcttcacctgtctgcttcctcccctctggataaattcctctatacggccctttggaagtctaatagcccaagaagggttaatatcttcatttggatcaccctgataggttaa

Coding sequence (CDS)

ATGTGGGACACAAATAAGTTATCGCCATCTGTCACTGAAACACTAAAAGGTGGATACTCTTTATCTGTAAAATGCATCACATTATGGAGAAAAACTTGCTGCCTTACTAATGTGTATGGTCCTACTGATTATAAGGACAGGAAATTTGTATGGCCTGGACTACTAATTCTCTCGGGTATGGAAGCTTGGTGTTTTGGAGGTGAATTCAACATCACAAGATGGGTGCATGAAAGATTTCCACTAGGGAGAATAACTAGAGGCATGCGGCTGTTCACTTGGTCACGGGAAGGGGCTTCAGTTGTAAGATTAGTCTTGGACAGATTTGTCATTAACAAGGCTTGGGATGATGAATTCGCAAACATAAGAGCTTCTAGGCAAGCTTGTTTATTCTCTGATCATTTTCCCTTATTTCTTGAAGCTGGATCAGATTTTGCAACAGCTGGTTGCTCGACAAAGACTGATTTGGCAGTTGAAAGAGCATGGATTAACAGTGGTTCAGAAGGCTGGGCATATTTTGTTCTTAATGCCAAGTTGAGAAGGGTTGAACTTGCAGTTAAAGATTGGAATGTTATTATCACAGCAAAGTTCTCCAAATTGGAAATTAAAGCAGCTGTTAACTTCCTTGGAAAGTGTAAAGCCCCATTTTTCGACGATTTTCATGGAAATATAAAACGAAATGCTTGTGTTCAGGAGGATTTCATTTGCTTAATCCAGAAAAAaGAAAATGCAGTGTTTATCAAAGATTTCAGGCCAATCATTACGACCTTAACCTACAAGGTTATTGCCAAGGTGCTAGCCGAGAGACTTAAAAAGGTAACGCTGTGCATCATTGCCCCCTCGCAAAGTGCTTTCATAGAAGGAAGGAAAATACTTGATCCGATCCTTGTTGCTAATGAAATTAACCTGAGATACTCAATATTCCTCAATAGAAGACCGGGAGGAAGAACGTTGGCTACAAAGGTTATCAGGCAGGGTGACCCCCTTTCGTCGTTCCTCTTCATACTTGTAAGTGAAGTTCTTGATGCTCTAATTGAAAATCTACATCAGAATGGCCTTTATGAAGGTTTTGTAGTGGGAAAGGACAAGATTCATGTTCCAATCCTTCAATTTGCAGATTACACCCTACTTTTTGCAAATGCGAAAGCAACATCCAAATGGGAGTGGAGATACATGGAAGAAGACTCTCCGTGGTGCAAGGTTATCAGGAGTATCCATGACAAAGATTCCTTTAATTGGCATACTGCCAGAAAAGAAGTCAAATGCGTGAGAAGCCCTTGGGTTATTATTTCGAGAACTTGTTTGCTAAAAGATGAAGAGATTTCAGACTTCCAAGTACTGCTTCGAAAATTAGCATCAAGAAATATTTCTGAAGTTCAAGACAGACAAATATGGTCACCTGGCGGCAGCAGAAAATTTACAGTAAAGTCCCTTACTCTTCACCTGTCTGCTTCCTCCCCTCTGGATAAATTCCTCTATACGGCCCTTTGGAAGTCTAATAGCCCAAGAAGGGTTAATATCTTCATTTGGATCACCCTGATAGGTTAA

Protein sequence

MWDTNKLSPSVTETLKGGYSLSVKCITLWRKTCCLTNVYGPTDYKDRKFVWPGLLILSGMEAWCFGGEFNITRWVHERFPLGRITRGMRLFTWSREGASVVRLVLDRFVINKAWDDEFANIRASRQACLFSDHFPLFLEAGSDFATAGCSTKTDLAVERAWINSGSEGWAYFVLNAKLRRVELAVKDWNVIITAKFSKLEIKAAVNFLGKCKAPFFDDFHGNIKRNACVQEDFICLIQKKENAVFIKDFRPIITTLTYKVIAKVLAERLKKVTLCIIAPSQSAFIEGRKILDPILVANEINLRYSIFLNRRPGGRTLATKVIRQGDPLSSFLFILVSEVLDALIENLHQNGLYEGFVVGKDKIHVPILQFADYTLLFANAKATSKWEWRYMEEDSPWCKVIRSIHDKDSFNWHTARKEVKCVRSPWVIISRTCLLKDEEISDFQVLLRKLASRNISEVQDRQIWSPGGSRKFTVKSLTLHLSASSPLDKFLYTALWKSNSPRRVNIFIWITLIG*

Homology

[Close]

BLAST of Cucsa.239280 vs. TrEMBL
Match: A5AJ92_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044198 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 85/222 (38.29%), Postives = 121/222 (54.50%), Query Frame = 1


Query: 186 KDWNVIITAKFSKLEIKAAVNFLGKCKAP-----------------------FFDDFHGN 245
           K+  + +   FS+ E++ AV  L K K P                        F +FH  
Sbjct: 304 KESAIWLDRPFSEEEVRMAVFQLNKEKTPGPDGFTIAVYQECWDVIKNDLMRIFFEFHTK 363

Query: 246 IKRNACVQEDFICLIQKKENAVFIKDFRPI-ITTLTYKVIAKVLAERLKKVTLCIIAPSQ 305
              N      FI ++ KK     I D+RPI + T  YK+IAKVL+ RL+KV    I  SQ
Sbjct: 364 GVINQSTNVTFIAMVPKKSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETIFGSQ 423

Query: 306 SAFIEGRKILDPILVANEI---NLRYSIFLNRRPGGRTLATKVIRQGDPLSSFLFILVSE 365
            AF+EGR+ILD +L+ANE+      ++I +N    G   A++ +RQGDPLS FLF LV++
Sbjct: 424 GAFVEGRQILDAVLIANEVVDEKRSFAILVNGNAKGWVKASRGLRQGDPLSPFLFTLVAD 483

Query: 366 VLDALIENLHQNGLYEGFVVGKDKIHVPILQFADYTLLFANA 381
           VL  L+    + G+ EGF+VG+D+  V +LQFAD T+ F+ A
Sbjct: 484 VLSRLMIRAEETGITEGFLVGRDRTRVSLLQFADDTIFFSKA 525

[Close]

BLAST of Cucsa.239280 vs. TrEMBL
Match: A5AI78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043792 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 104/345 (30.14%), Postives = 159/345 (46.09%), Query Frame = 1


Query: 91  FTWSREGASVVRLVLDRFVINKAWDDEFANIRASRQACLFSDHFPLFLEAG------SDF 150
           FTW+    +     LDRF+++ +W D+F+ +  SR   L  DHFP+ L  G      + F
Sbjct: 23  FTWNEGHNNQAWARLDRFLVSPSWLDQFSRVTQSRLPRLIFDHFPIILVGGGIRRGMTPF 82

Query: 151 ATAGCSTKTDL---AVERAWINSGSEGWAYFVLNAKLRRVELAVKDWNVIITAKFSKLEI 210
                  K +     +   W      G A F L AK++ +     +    + + F + E+
Sbjct: 83  RFENMWLKVEGFKDLIHSWWQGIEVRGSARFKLAAKMKEINQQEAE---NLESLFIEDEV 142

Query: 211 KAAVNFLGKCKAP-----------------------FFDDFHGNIKRNACVQEDFICLIQ 270
              +  +   KAP                        F +FH +      V   F+ LI 
Sbjct: 143 HTVLMEMNGDKAPSPNGFATAFWQSCWGFVKEEILEMFKEFHEHNSFLKSVNNTFLVLIP 202

Query: 271 KKENAVFIKDFRPI-ITTLTYKVIAKVLAERLKKVTLCIIAPSQSAFIEGRKILDPILVA 330
           KK  A  + DFRPI +    YK++AKVLA RLKKV   +++ SQ+AF+ GR+ILD  L+A
Sbjct: 203 KKSGAEDLGDFRPISLLGGLYKLLAKVLANRLKKVVGKVVSTSQNAFVMGRQILDASLIA 262

Query: 331 NEI-------------------NLRYSIFLNRRPGGRTLATKVIRQGDPLSSFLFILVSE 381
           NE+                   + ++S+ +NR P G   +TK +RQGDPLS +LF++  E
Sbjct: 263 NEVLQKMGFGSKWLGWMWSCLSSAKFSVLVNRVPDGFFPSTKGLRQGDPLSPYLFVMGME 322

[Close]

BLAST of Cucsa.239280 vs. TrEMBL
Match: A5C4I7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015344 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 110/410 (26.83%), Postives = 169/410 (41.22%), Query Frame = 1


Query: 36  TNVYGPTDYKDRKFVWPGLLILSGM--EAWCFGGEFNITRWVHERFPLGRITRGMRLF-- 95
           T VY P    +R  +W     + G+  + WC GG+FNIT +  ER     I+  MR F  
Sbjct: 482 TGVYDPFSKVERDALWEEFGAIRGLWEDPWCLGGDFNITLFPRERSSQRIISSAMRKFAE 541

Query: 96  -----------------TWSREGASVVRLVLDRFVINKAWDDEFANIRASRQACLFSDHF 155
                            +W+    +     LDRF+++ +W D+F+ I   R     SDHF
Sbjct: 542 IVNDLGLVDLPLQGGECSWNEGQNNQTWARLDRFLVSLSWIDQFSGINQCRLPRSISDHF 601

Query: 156 PLFLEAG------SDFATAGCSTKTDLAVERA---WINSGSEGWAYFVLNAKLRRVELAV 215
           P+ L  G      + F       K +   E     W      G A + L  K++ ++  +
Sbjct: 602 PIMLVGGGIRRGPTPFRFENMWLKAEGFKELVCSWWQGIDVRGSASYKLATKMKEIKQKL 661

Query: 216 KDWNVII--------------------------TAKFSKLEIKAAVNFLGKCKAP----- 275
           K WN  +                             F++ EI AA+  + + KAP     
Sbjct: 662 KVWNREVFEGTGWKADIGRLQLDQISQQEAENLERPFTEDEIHAALMEMNEDKAPGPDGF 721

Query: 276 ------------------FFDDFHGNIKRNACVQEDFICLIQKKENAVFIKDFRPI-ITT 335
                              F +F+ +      +   F+ LI KK     + DFRPI +  
Sbjct: 722 TLPFWQSCWEFIKEEILEMFKEFYEHSSFLKSLNNTFLVLIPKKSGVEDLGDFRPISLLE 781

Query: 336 LTYKVIAKVLAERLKKVTLCIIAPSQSAFIEGRKILDPILVANEI----------NLRYS 356
             YK++ KVLA RLK V   +++ SQ+AF+ GR+IL   L+ANE+           L   
Sbjct: 782 GLYKLLTKVLANRLKIVVGKVVSTSQNAFVRGRQILYASLIANEVIDSWQKRKEKGLICK 841

[Close]

BLAST of Cucsa.239280 vs. TrEMBL
Match: A5B9F0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.8e-24
Identity = 69/170 (40.59%), Postives = 103/170 (60.59%), Query Frame = 1


Query: 216  FDDFHGNIKRNACVQEDFICLIQKKENAVFIKDFRPI-ITTLTYKVIAKVLAERLKKVTL 275
            FD+FH +   N      FI L+ KK  A  + D+RPI + T  YK+IAKVLA RL+ V  
Sbjct: 1258 FDEFHRSGIINQSTNASFIVLLPKKSMAKKLSDYRPISLITSLYKIIAKVLAGRLRGVLH 1317

Query: 276  CIIAPSQSAFIEGRKILDPILVANEI---NLRYSIFLNRRPGGRTLATKVIRQGDPLSSF 335
              I  +Q AF++GR+ILD +L+ANEI     R    +N    G    ++ +RQGDPLS F
Sbjct: 1318 ETIHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEVNGNAKGWVKTSRGLRQGDPLSPF 1377

Query: 336  LFILVSEVLDALIENLHQNGLYEGFVVGKDKIHVPILQFADYTLLFANAK 382
            LF +V++V+  ++    +  ++EGF VG+++  V  LQFAD T+ F++ +
Sbjct: 1378 LFTIVADVMSRMLLRAEERNVFEGFRVGRNRTRVSHLQFADDTIFFSSTR 1427

[Close]

BLAST of Cucsa.239280 vs. TrEMBL
Match: A5C481_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029602 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 108/379 (28.50%), Postives = 155/379 (40.90%), Query Frame = 1


Query: 1    MWDTNKLSPSVTETLKGGYSLSVK-----CITLWRKTCCLTNVYGPTDYKDRKFVWPGLL 60
            +WD+ KL     E + G +S+SVK     C  LW     ++ VYGP     RK  W  L 
Sbjct: 824  IWDSKKLCRE--EVVLGSFSISVKFILDGCGPLW-----ISAVYGPNSPSLRKDFWVELY 883

Query: 61   ILSGME--AWCFGGEFNITRWVHERFPLGRITRGMR-------------------LFTWS 120
             + G+    WC G +FN+ R   E+    R+T  MR                    FTWS
Sbjct: 884  DIYGLSFPLWCVGSDFNVIRRSSEKLGGSRLTSSMRDFDSFIRECELLDPPLRNASFTWS 943

Query: 121  REGASVVRLVLDRFVINKAWDDEFANIRASRQACLFSDHFPLFLEAGSDFATAGCSTKTD 180
                S V   LDRF+ +  W   F            SDH+P+ L+  + F        T 
Sbjct: 944  NLQESPVCKRLDRFLYSNLWGQLFPQGLQEALIQRTSDHWPIALDT-NPFMWG----PTP 1003

Query: 181  LAVERAWINS------------GSEG--WAYFVLNAKLRRVELAVKDWN----------- 240
               E  W+              G +G  W       +L+ V+  +K+WN           
Sbjct: 1004 FRFENMWLQHPSFKENFRNWWRGFQGNRWESHKFMRRLQSVKAKLKEWNKFSFGELNEKK 1063

Query: 241  ----VIITAKFSKLEIKAAVNFLGKCKAP-----------------------FFDDFHGN 300
                + + + F++ EI  A+  L + KAP                        F +FH +
Sbjct: 1064 KKSAIRLDSPFTEEEISKAIFQLDRNKAPGPDGFTIAVFQDCWDVIKEDLVRVFXEFHRS 1123

[Close]

BLAST of Cucsa.239280 vs. NCBI nr
Match: gi|147771823|emb|CAN71339.1| (hypothetical protein VITISV_043792 [Vitis vinifera])

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28
Identity = 104/345 (30.14%), Postives = 159/345 (46.09%), Query Frame = 1


Query: 91  FTWSREGASVVRLVLDRFVINKAWDDEFANIRASRQACLFSDHFPLFLEAG------SDF 150
           FTW+    +     LDRF+++ +W D+F+ +  SR   L  DHFP+ L  G      + F
Sbjct: 23  FTWNEGHNNQAWARLDRFLVSPSWLDQFSRVTQSRLPRLIFDHFPIILVGGGIRRGMTPF 82

Query: 151 ATAGCSTKTDL---AVERAWINSGSEGWAYFVLNAKLRRVELAVKDWNVIITAKFSKLEI 210
                  K +     +   W      G A F L AK++ +     +    + + F + E+
Sbjct: 83  RFENMWLKVEGFKDLIHSWWQGIEVRGSARFKLAAKMKEINQQEAE---NLESLFIEDEV 142

Query: 211 KAAVNFLGKCKAP-----------------------FFDDFHGNIKRNACVQEDFICLIQ 270
              +  +   KAP                        F +FH +      V   F+ LI 
Sbjct: 143 HTVLMEMNGDKAPSPNGFATAFWQSCWGFVKEEILEMFKEFHEHNSFLKSVNNTFLVLIP 202

Query: 271 KKENAVFIKDFRPI-ITTLTYKVIAKVLAERLKKVTLCIIAPSQSAFIEGRKILDPILVA 330
           KK  A  + DFRPI +    YK++AKVLA RLKKV   +++ SQ+AF+ GR+ILD  L+A
Sbjct: 203 KKSGAEDLGDFRPISLLGGLYKLLAKVLANRLKKVVGKVVSTSQNAFVMGRQILDASLIA 262

Query: 331 NEI-------------------NLRYSIFLNRRPGGRTLATKVIRQGDPLSSFLFILVSE 381
           NE+                   + ++S+ +NR P G   +TK +RQGDPLS +LF++  E
Sbjct: 263 NEVLQKMGFGSKWLGWMWSCLSSAKFSVLVNRVPDGFFPSTKGLRQGDPLSPYLFVMGME 322

[Close]

BLAST of Cucsa.239280 vs. NCBI nr
Match: gi|147852254|emb|CAN82239.1| (hypothetical protein VITISV_044198 [Vitis vinifera])

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28
Identity = 85/222 (38.29%), Postives = 121/222 (54.50%), Query Frame = 1


Query: 186 KDWNVIITAKFSKLEIKAAVNFLGKCKAP-----------------------FFDDFHGN 245
           K+  + +   FS+ E++ AV  L K K P                        F +FH  
Sbjct: 304 KESAIWLDRPFSEEEVRMAVFQLNKEKTPGPDGFTIAVYQECWDVIKNDLMRIFFEFHTK 363

Query: 246 IKRNACVQEDFICLIQKKENAVFIKDFRPI-ITTLTYKVIAKVLAERLKKVTLCIIAPSQ 305
              N      FI ++ KK     I D+RPI + T  YK+IAKVL+ RL+KV    I  SQ
Sbjct: 364 GVINQSTNVTFIAMVPKKSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETIFGSQ 423

Query: 306 SAFIEGRKILDPILVANEI---NLRYSIFLNRRPGGRTLATKVIRQGDPLSSFLFILVSE 365
            AF+EGR+ILD +L+ANE+      ++I +N    G   A++ +RQGDPLS FLF LV++
Sbjct: 424 GAFVEGRQILDAVLIANEVVDEKRSFAILVNGNAKGWVKASRGLRQGDPLSPFLFTLVAD 483

Query: 366 VLDALIENLHQNGLYEGFVVGKDKIHVPILQFADYTLLFANA 381
           VL  L+    + G+ EGF+VG+D+  V +LQFAD T+ F+ A
Sbjct: 484 VLSRLMIRAEETGITEGFLVGRDRTRVSLLQFADDTIFFSKA 525

[Close]

BLAST of Cucsa.239280 vs. NCBI nr
Match: gi|147828499|emb|CAN77578.1| (hypothetical protein VITISV_015344 [Vitis vinifera])

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-25
Identity = 110/410 (26.83%), Postives = 169/410 (41.22%), Query Frame = 1


Query: 36  TNVYGPTDYKDRKFVWPGLLILSGM--EAWCFGGEFNITRWVHERFPLGRITRGMRLF-- 95
           T VY P    +R  +W     + G+  + WC GG+FNIT +  ER     I+  MR F  
Sbjct: 482 TGVYDPFSKVERDALWEEFGAIRGLWEDPWCLGGDFNITLFPRERSSQRIISSAMRKFAE 541

Query: 96  -----------------TWSREGASVVRLVLDRFVINKAWDDEFANIRASRQACLFSDHF 155
                            +W+    +     LDRF+++ +W D+F+ I   R     SDHF
Sbjct: 542 IVNDLGLVDLPLQGGECSWNEGQNNQTWARLDRFLVSLSWIDQFSGINQCRLPRSISDHF 601

Query: 156 PLFLEAG------SDFATAGCSTKTDLAVERA---WINSGSEGWAYFVLNAKLRRVELAV 215
           P+ L  G      + F       K +   E     W      G A + L  K++ ++  +
Sbjct: 602 PIMLVGGGIRRGPTPFRFENMWLKAEGFKELVCSWWQGIDVRGSASYKLATKMKEIKQKL 661

Query: 216 KDWNVII--------------------------TAKFSKLEIKAAVNFLGKCKAP----- 275
           K WN  +                             F++ EI AA+  + + KAP     
Sbjct: 662 KVWNREVFEGTGWKADIGRLQLDQISQQEAENLERPFTEDEIHAALMEMNEDKAPGPDGF 721

Query: 276 ------------------FFDDFHGNIKRNACVQEDFICLIQKKENAVFIKDFRPI-ITT 335
                              F +F+ +      +   F+ LI KK     + DFRPI +  
Sbjct: 722 TLPFWQSCWEFIKEEILEMFKEFYEHSSFLKSLNNTFLVLIPKKSGVEDLGDFRPISLLE 781

Query: 336 LTYKVIAKVLAERLKKVTLCIIAPSQSAFIEGRKILDPILVANEI----------NLRYS 356
             YK++ KVLA RLK V   +++ SQ+AF+ GR+IL   L+ANE+           L   
Sbjct: 782 GLYKLLTKVLANRLKIVVGKVVSTSQNAFVRGRQILYASLIANEVIDSWQKRKEKGLICK 841

[Close]

BLAST of Cucsa.239280 vs. NCBI nr
Match: gi|147865371|emb|CAN81943.1| (hypothetical protein VITISV_007361 [Vitis vinifera])

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 98/328 (29.88%), Postives = 146/328 (44.51%), Query Frame = 1


Query: 36  TNVYGPTDYKDRKFVWPGLLILSGM--EAWCFGGEFNITRWVHERFPLGRITRGMRLFTW 95
           T VYGP   ++R+ +W  +  + G+  E WC GG+FNIT +  ER   GRIT  MR    
Sbjct: 74  TGVYGPFTKEERECLWEEIGAIRGIWEEPWCLGGDFNITLFQRERSRQGRITPTMR---- 133

Query: 96  SREGASVVRLVLDRFVINKAWDDEFANIRASRQACLFSDHFPLFLEAG------SDFATA 155
                        RF+++ +W D+F+ +   +     SDHFPL LE G      S F   
Sbjct: 134 -------------RFLVSPSWLDQFSGVLQRKLPRPISDHFPLLLEGGGLRRGPSPFRFE 193

Query: 156 GCSTKT----DLAVERAWINSGSEGWAYFVLNAKLRRVELAVKDWNVIITAK-------- 215
               K     DL +   W      G A + L AK++ ++  +K WN  + ++        
Sbjct: 194 NMWLKVXSFLDL-IRNWWRGIXVRGTASYRLAAKMKEIKQKLKVWNREMLSEDSRWKADI 253

Query: 216 -------------------FSKLEIKAAVNFLGKCKA----------------------- 275
                              FSK EI+ A+  +   KA                       
Sbjct: 254 GRLQLDQISQQEAENLEIPFSKNEIQLALMEMNGDKALGPDGFTMAFWQSCWEFVKVEIL 313

Query: 276 PFFDDFHGNIKRNACVQEDFICLIQKKENAVFIKDFRPI-ITTLTYKVIAKVLAERLKKV 301
             F +FH        +   F+ +I KK  AV ++DF PI +    YK++AKVLA RLK+V
Sbjct: 314 EMFKEFHEQSSFLKSLNNTFLVMIPKKGGAVDLRDFSPISLLGGLYKLLAKVLANRLKRV 373

[Close]

BLAST of Cucsa.239280 vs. NCBI nr
Match: gi|147865371|emb|CAN81943.1| (hypothetical protein VITISV_007361 [Vitis vinifera])

HSP 1 Score: 50.8 bits (120), Expect = 8.1e-03
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1


Query: 303 RYSIFLNRRPGGRTLATKVIRQGDPLSSFLFILVSEVLDALIENLHQNGLYEGFVVGKDK 362
           ++S+ +N    G   ++K +RQGDPLS +LF+L  EVLDALI  +   G   G  +   +
Sbjct: 438 KFSVLVNGVLAGFFPSSKGLRQGDPLSPYLFVLGMEVLDALIRRVVVGGYLLGCSIRGGR 497

Query: 363 IH---VPILQFADYTLLFANA 381
            H   +  L FAD T++F+ A
Sbjct: 498 RHNLKISHLFFADDTIVFSEA 518

HSP 2 Score: 120.6 bits (301), Expect = 8.3e-24
Identity = 69/170 (40.59%), Postives = 103/170 (60.59%), Query Frame = 1


Query: 216  FDDFHGNIKRNACVQEDFICLIQKKENAVFIKDFRPI-ITTLTYKVIAKVLAERLKKVTL 275
            FD+FH +   N      FI L+ KK  A  + D+RPI + T  YK+IAKVLA RL+ V  
Sbjct: 1258 FDEFHRSGIINQSTNASFIVLLPKKSMAKKLSDYRPISLITSLYKIIAKVLAGRLRGVLH 1317

Query: 276  CIIAPSQSAFIEGRKILDPILVANEI---NLRYSIFLNRRPGGRTLATKVIRQGDPLSSF 335
              I  +Q AF++GR+ILD +L+ANEI     R    +N    G    ++ +RQGDPLS F
Sbjct: 1318 ETIHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEVNGNAKGWVKTSRGLRQGDPLSPF 1377

Query: 336  LFILVSEVLDALIENLHQNGLYEGFVVGKDKIHVPILQFADYTLLFANAK 382
            LF +V++V+  ++    +  ++EGF VG+++  V  LQFAD T+ F++ +
Sbjct: 1378 LFTIVADVMSRMLLRAEERNVFEGFRVGRNRTRVSHLQFADDTIFFSSTR 1427

The following BLAST results are available for this feature:

BLAST of Cucsa.239280 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AJ92_VITVI	2.3e-28	38.29	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044198 PE=4 SV=1	[more]
A5AI78_VITVI	2.3e-28	30.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043792 PE=4 SV=1	[more]
A5C4I7_VITVI	1.8e-25	26.83	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015344 PE=4 SV=1	[more]
A5B9F0_VITVI	5.8e-24	40.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1	[more]
A5C481_VITVI	1.1e-22	28.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029602 PE=4 SV=1	[more]

BLAST of Cucsa.239280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147771823\|emb\|CAN71339.1\|	3.3e-28	30.14	hypothetical protein VITISV_043792 [Vitis vinifera]	[more]
gi\|147852254\|emb\|CAN82239.1\|	3.3e-28	38.29	hypothetical protein VITISV_044198 [Vitis vinifera]	[more]
gi\|147828499\|emb\|CAN77578.1\|	2.6e-25	26.83	hypothetical protein VITISV_015344 [Vitis vinifera]	[more]
gi\|147865371\|emb\|CAN81943.1\|	1.7e-24	29.88	hypothetical protein VITISV_007361 [Vitis vinifera]	[more]
gi\|147865371\|emb\|CAN81943.1\|	8.1e-03	38.27	hypothetical protein VITISV_007361 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.239280.1	Cucsa.239280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	unknown	SSF56219	DNase I-like	coord: 22..139 score: 2.1
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 1..352 score: 2.2
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 1..352 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.239280	CSPI07G10400	Wild cucumber (PI 183967)	cgycpiB357

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.239280	Melon (DHL92) v3.6.1	cgymedB403
Cucsa.239280	Cucumber (Chinese Long) v3	cgycucB361
Cucsa.239280	Cucumber (Chinese Long) v2	cgycuB341
Cucsa.239280	Melon (DHL92) v3.5.1	cgymeB405