Cucsa.235730 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.235730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAnaphase-promoting complex subunit 4
Locationscaffold02012 : 434568 .. 434841 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCAAACTTCTTTAACTGGCTTATACGATGTATTAAACTACTTATGTCAGAGCCGAGCGATCAACTTCTACCTTATAATAGGTAGTTCTCTCTCTCCCTGATTTAATGACACTTGCTTAAGTTGTGAACTCTCTCTGCCTGGTCTAATTACATTTGTTGGTCATTGCAGTGAGCTTGTTGTCATTTTCTTGAAGTTTTTATACAACCAAGATCCTGTCAATAAGCTGCTTGAAGCATCTGAAAACGACAACAATATTGAGATTGACTCGTGA

mRNA sequence

TTCTCAAACTTCTTTAACTGGCTTATACGATGTATTAAACTACTTATGTCAGAGCCGAGCGATCAACTTCTACCTTATAATAGTGAGCTTGTTGTCATTTTCTTGAAGTTTTTATACAACCAAGATCCTGTCAATAAGCTGCTTGAAGCATCTGAAAACGACAACAATATTGAGATTGACTCGTGA

Coding sequence (CDS)

TTCTCAAACTTCTTTAACTGGCTTATACGATGTATTAAACTACTTATGTCAGAGCCGAGCGATCAACTTCTACCTTATAATAGTGAGCTTGTTGTCATTTTCTTGAAGTTTTTATACAACCAAGATCCTGTCAATAAGCTGCTTGAAGCATCTGAAAACGACAACAATATTGAGATTGACTCGTGA

Protein sequence

FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEIDS*
Homology
[Close]
BLAST of Cucsa.235730 vs. Swiss-Prot
Match: APC4_ARATH (Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 8.2e-19
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWL+R IK LM EP+DQLL YNSEL+V+FLKFLY+QDPV  LLE SE  ++IEID
Sbjct: 453 FSNFFNWLVRSIKYLMQEPNDQLLSYNSELLVVFLKFLYDQDPVKDLLELSEAGDDIEID 512

[Close]
BLAST of Cucsa.235730 vs. TrEMBL
Match: A0A0A0LUA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G386570 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID
Sbjct: 448 FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 507

Query: 61  S 62
           S
Sbjct: 508 S 508

[Close]
BLAST of Cucsa.235730 vs. TrEMBL
Match: G7JRT3_MEDTR (Anaphase-promoting complex subunit 4 OS=Medicago truncatula GN=MTR_4g090990 PE=4 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-20
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           +SNFFNWL++CIKLLMSEPSDQLLPYNSELV+IFLKFLY QDPV +LLE SE D ++EID
Sbjct: 450 YSNFFNWLLKCIKLLMSEPSDQLLPYNSELVIIFLKFLYEQDPVKQLLEISETDYDVEID 509

[Close]
BLAST of Cucsa.235730 vs. TrEMBL
Match: A0A067JMZ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21360 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-20
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWL++CIKLLM EPSDQLLPYNSELVVIFLKFLY+QDPV +LLE SE  +NIE+D
Sbjct: 450 FSNFFNWLLKCIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLELSEVSHNIEVD 509

[Close]
BLAST of Cucsa.235730 vs. TrEMBL
Match: W9RDI2_9ROSA (Anaphase-promoting complex subunit 4 OS=Morus notabilis GN=L484_006393 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-20
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWL++CI+LLMSEPSDQLLPYNSELVVIFLKFLY+QDPV +LLE+S+ D+ IEID
Sbjct: 450 FSNFFNWLLKCIRLLMSEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLESSDADHIIEID 509

[Close]
BLAST of Cucsa.235730 vs. TrEMBL
Match: K7L2M1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G190600 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-20
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           +SNFFNWL++CIKLLMSEPSDQLLPYNSELV++FLKFLY QDPV +LLE SE +  +EID
Sbjct: 450 YSNFFNWLLKCIKLLMSEPSDQLLPYNSELVIVFLKFLYEQDPVKQLLEVSETEYEVEID 509

[Close]
BLAST of Cucsa.235730 vs. TAIR10
Match: AT4G21530.1 (AT4G21530.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 93.6 bits (231), Expect = 4.6e-20
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWL+R IK LM EP+DQLL YNSEL+V+FLKFLY+QDPV  LLE SE  ++IEID
Sbjct: 453 FSNFFNWLVRSIKYLMQEPNDQLLSYNSELLVVFLKFLYDQDPVKDLLELSEAGDDIEID 512

[Close]
BLAST of Cucsa.235730 vs. NCBI nr
Match: gi|778660566|ref|XP_011656470.1| (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID
Sbjct: 448 FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 507

Query: 61  S 62
           S
Sbjct: 508 S 508

[Close]
BLAST of Cucsa.235730 vs. NCBI nr
Match: gi|700210277|gb|KGN65373.1| (hypothetical protein Csa_1G386570 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID
Sbjct: 448 FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 507

Query: 61  S 62
           S
Sbjct: 508 S 508

[Close]
BLAST of Cucsa.235730 vs. NCBI nr
Match: gi|659126790|ref|XP_008463366.1| (PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID
Sbjct: 448 FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 507

Query: 61  S 62
           S
Sbjct: 508 S 508

[Close]
BLAST of Cucsa.235730 vs. NCBI nr
Match: gi|1009109054|ref|XP_015888006.1| (PREDICTED: anaphase-promoting complex subunit 4 [Ziziphus jujuba])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWL++CIKLLMSEPSDQLLPYNSELV+IFLKFLY++DPV +LLEAS+ D+ IEID
Sbjct: 412 FSNFFNWLLKCIKLLMSEPSDQLLPYNSELVIIFLKFLYDRDPVRQLLEASDADDTIEID 471

[Close]
BLAST of Cucsa.235730 vs. NCBI nr
Match: gi|802781794|ref|XP_012091497.1| (PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas])

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 1   FSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVIFLKFLYNQDPVNKLLEASENDNNIEID 60
           FSNFFNWL++CIKLLM EPSDQLLPYNSELVVIFLKFLY+QDPV +LLE SE  +NIE+D
Sbjct: 450 FSNFFNWLLKCIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLELSEVSHNIEVD 509

The following BLAST results are available for this feature:
BLAST of Cucsa.235730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
APC4_ARATH8.2e-1973.33Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=2 SV=2[more]
BLAST of Cucsa.235730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUA0_CUCSA9.7e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G386570 PE=4 SV=1[more]
G7JRT3_MEDTR1.8e-2080.00Anaphase-promoting complex subunit 4 OS=Medicago truncatula GN=MTR_4g090990 PE=4... [more]
A0A067JMZ1_JATCU1.8e-2081.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21360 PE=4 SV=1[more]
W9RDI2_9ROSA2.3e-2081.67Anaphase-promoting complex subunit 4 OS=Morus notabilis GN=L484_006393 PE=4 SV=1[more]
K7L2M1_SOYBN6.8e-2076.67Uncharacterized protein OS=Glycine max GN=GLYMA_07G190600 PE=4 SV=1[more]
BLAST of Cucsa.235730 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21530.14.6e-2073.33 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of Cucsa.235730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778660566|ref|XP_011656470.1|1.4e-26100.00PREDICTED: anaphase-promoting complex subunit 4 [Cucumis sativus][more]
gi|700210277|gb|KGN65373.1|1.4e-26100.00hypothetical protein Csa_1G386570 [Cucumis sativus][more]
gi|659126790|ref|XP_008463366.1|1.4e-26100.00PREDICTED: anaphase-promoting complex subunit 4 [Cucumis melo][more]
gi|1009109054|ref|XP_015888006.1|1.1e-2081.67PREDICTED: anaphase-promoting complex subunit 4 [Ziziphus jujuba][more]
gi|802781794|ref|XP_012091497.1|2.6e-2081.67PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0048481 plant ovule development
biological_process GO:0030071 regulation of mitotic metaphase/anaphase transition
cellular_component GO:0005680 anaphase-promoting complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.235730.1Cucsa.235730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.235730Csa1G386570Cucumber (Chinese Long) v2cgycuB333
Cucsa.235730CSPI01G19500Wild cucumber (PI 183967)cgycpiB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.235730Bottle gourd (USVL1VR-Ls)cgylsiB382
Cucsa.235730Melon (DHL92) v3.6.1cgymedB394
Cucsa.235730Silver-seed gourdcarcgyB0042
Cucsa.235730Silver-seed gourdcarcgyB0157
Cucsa.235730Cucumber (Chinese Long) v3cgycucB353
Cucsa.235730Watermelon (97103) v2cgywmbB412
Cucsa.235730Wax gourdcgywgoB465
Cucsa.235730Cucurbita maxima (Rimu)cgycmaB0648
Cucsa.235730Cucurbita maxima (Rimu)cgycmaB0649
Cucsa.235730Cucurbita moschata (Rifu)cgycmoB0649
Cucsa.235730Cucurbita moschata (Rifu)cgycmoB0650
Cucsa.235730Wild cucumber (PI 183967)cgycpiB349
Cucsa.235730Melon (DHL92) v3.5.1cgymeB396
Cucsa.235730Watermelon (Charleston Gray)cgywcgB411
Cucsa.235730Watermelon (97103) v1cgywmB438
Cucsa.235730Cucurbita pepo (Zucchini)cgycpeB0618
Cucsa.235730Cucurbita pepo (Zucchini)cgycpeB0619