Cucsa.234870 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.234870
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ATP-dependent DNA helicase RecG
Location	scaffold02004 : 77033 .. 77651 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGGCATATAACGGGATTCATCGGCCAAATAGTATAAAGGAAGCTGATTTGGCTCGCAAACGTCTTATGTTTGACGAGTTTTTTTACCTGCAGGTAAAGTTATTTTAAATCTACTTCAACATTAGTATTCCTTCATCTGTCCGTGGAAGAGTTGAATGAAGGAGCTGGTCTGAGTATTGTTAAAATAGTGTAAATAGTATAATTGCCTATCCTTCAAGGGTTCCCTGTTATGGTTTCAATAAAAAGAAAAaGTAAAGGAAAAAGAAAAAGGAGGAAAACATGTTGTCAAATGTCAACAGTTCAGATAATTTTAATGGTTACATTTGGTTATAATTTGTTTTAATTTCTTGATACTTGACCACATATTATGATTTAACAGTTGGCACGCTTGTTCCAAATGCTGGAAGGTCTGGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAGTATCGTCAACCTCATTTAAATGCTGCATATATGAAGGATTGGGCTTACCTCACCCAAAAGTTCCTTAAAGCCCTTCCGTATTCCCTTACAGTGAGTCAGATGAAAGCTATTGCAGAAATTATATGGGACTTGAAGCGACCAATTCCTATGAATAGGCTCTTGCAG

mRNA sequence

ATGAAGCAGGCATATAACGGGATTCATCGGCCAAATAGTATAAAGGAAGCTGATTTGGCTCGCAAACGTCTTATGTTTGACGAGTTTTTTTACCTGCAGTTGGCACGCTTGTTCCAAATGCTGGAAGGTCTGGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAGTATCGTCAACCTCATTTAAATGCTGCATATATGAAGGATTGGGCTTACCTCACCCAAAAGTTCCTTAAAGCCCTTCCGTATTCCCTTACAGTGAGTCAGATGAAAGCTATTGCAGAAATTATATGGGACTTGAAGCGACCAATTCCTATGAATAGGCTCTTGCAG

Coding sequence (CDS)

ATGAAGCAGGCATATAACGGGATTCATCGGCCAAATAGTATAAAGGAAGCTGATTTGGCTCGCAAACGTCTTATGTTTGACGAGTTTTTTTACCTGCAGTTGGCACGCTTGTTCCAAATGCTGGAAGGTCTGGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAGTATCGTCAACCTCATTTAAATGCTGCATATATGAAGGATTGGGCTTACCTCACCCAAAAGTTCCTTAAAGCCCTTCCGTATTCCCTTACAGTGAGTCAGATGAAAGCTATTGCAGAAATTATATGGGACTTGAAGCGACCAATTCCTATGAATAGGCTCTTGCAG

Protein sequence

MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQPHLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ

Homology

[Close]

BLAST of Cucsa.234870 vs. Swiss-Prot
Match: RECG_ARATH (ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana GN=RECG PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.1e-41
Identity = 77/111 (69.37%), Postives = 97/111 (87.39%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY GIH P ++ EADLARKRL+FDEFFYLQLARL+QML+ LGT+IEKD LL+K+R+P
Sbjct: 438 LNDAYVGIHEPKTLDEADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKP 497

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            LN+ Y+++W+ LT+ FLKALPYSLT SQ+ A++EIIWDLKRP+PMNRLLQ
Sbjct: 498 VLNSVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQ 548

[Close]

BLAST of Cucsa.234870 vs. Swiss-Prot
Match: RECG_SYNY3 (ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=recG PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.6e-11
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           ++ A   IH P + ++  LAR+RL+FDEFFYLQL  L +  E             K +Q 
Sbjct: 337 LQTAIAQIHFPENTEKLSLARRRLVFDEFFYLQLGFLQRRYE------------QKQQQ- 396

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
              +A       L +KF   LP+ LT +Q + + EI+ DL +P PMNRL+Q
Sbjct: 397 --QSAIFTPHGELLEKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQ 432

[Close]

BLAST of Cucsa.234870 vs. Swiss-Prot
Match: RECG_AQUAE (ATP-dependent DNA helicase RecG OS=Aquifex aeolicus (strain VF5) GN=recG PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 8   IHRPNSIKE------ADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQPH 67
           +H P  I         DL  KR+++DE F  QLA L +  E           + K + P 
Sbjct: 294 LHNPKDISVNALNSFTDLYHKRVIYDELFLFQLALLLKKQE-----------IKKEKAPK 353

Query: 68  LNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
           +N     D  +L +K ++ LP+ LT +Q +AI EI+ DL R +PMNRLLQ
Sbjct: 354 VNV----DEKFL-RKAIEKLPFKLTRAQERAIKEILEDLSRDVPMNRLLQ 387

[Close]

BLAST of Cucsa.234870 vs. Swiss-Prot
Match: RECG_TREPA (ATP-dependent DNA helicase RecG OS=Treponema pallidum (strain Nichols) GN=recG PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-06
Identity = 34/108 (31.48%), Postives = 55/108 (50.93%), Query Frame = 1


Query: 8   IHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLG----TRIEKDCLLDKYRQPHLN 67
           +H P ++ +    +  L+F+EFF LQ+    + L+  G    T+ E D       Q    
Sbjct: 197 MHTPRTLDDVAKGKHSLIFEEFFSLQMTIGMRSLQKRGRLPLTQGESD-------QQSAI 256

Query: 68  AAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            + + + + L +K  + LP+ LTV Q + I EI  DL+R  PM RL+Q
Sbjct: 257 PSVVSELSLLQKKLHRCLPFELTVDQKRVITEITQDLEREEPMARLIQ 297

[Close]

BLAST of Cucsa.234870 vs. Swiss-Prot
Match: RECG_BACSU (ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) GN=recG PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-06
Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 1


Query: 3   QAYNGIHRPNSIKEADLARKRLMFDEFFYLQLA-RLFQMLEGLGTRIEKDCLLDKYRQPH 62
           QA   +H+P + +   LAR+R +++EF   QL  + F+  E   T+          RQ  
Sbjct: 190 QALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQ--------GIRQRF 249

Query: 63  LNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            N   M+        F+K+LP+ LT +Q + + EI  D+  P  MNRLLQ
Sbjct: 250 SNEELMR--------FIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQ 283

[Close]

BLAST of Cucsa.234870 vs. TrEMBL
Match: A0A061E7L6_THECC (DEAD/DEAH box RNA helicase family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_010869 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-42
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY+GIH+P +++EADLARKRL+FDEFFYLQL RLFQMLEGLGT+IEKD LLD YR+P
Sbjct: 494 LHDAYSGIHQPKNLEEADLARKRLIFDEFFYLQLGRLFQMLEGLGTKIEKDGLLDMYRKP 553

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            +NAAYM++W+ LT+KFLKALPYSLT  Q+ AI+EIIWDLKRP+PMNRLLQ
Sbjct: 554 EVNAAYMEEWSSLTKKFLKALPYSLTSGQLSAISEIIWDLKRPVPMNRLLQ 604

[Close]

BLAST of Cucsa.234870 vs. TrEMBL
Match: A0A061E7H0_THECC (DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_010869 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-42
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY+GIH+P +++EADLARKRL+FDEFFYLQL RLFQMLEGLGT+IEKD LLD YR+P
Sbjct: 494 LHDAYSGIHQPKNLEEADLARKRLIFDEFFYLQLGRLFQMLEGLGTKIEKDGLLDMYRKP 553

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            +NAAYM++W+ LT+KFLKALPYSLT  Q+ AI+EIIWDLKRP+PMNRLLQ
Sbjct: 554 EVNAAYMEEWSSLTKKFLKALPYSLTSGQLSAISEIIWDLKRPVPMNRLLQ 604

[Close]

BLAST of Cucsa.234870 vs. TrEMBL
Match: A0A0D2SI40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161600 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-41
Identity = 82/111 (73.87%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY GIH+P +I+EADLAR+R++FDEFFYLQL RLFQMLEGLGT+IEKD LL+KYR+P
Sbjct: 493 LNDAYVGIHQPKNIEEADLARRRIIFDEFFYLQLGRLFQMLEGLGTKIEKDGLLEKYRKP 552

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            +NAAYM++W+ LT+KFLKALPYSLT  Q+ AI+EIIWDLKRP+PMNRLLQ
Sbjct: 553 EVNAAYMEEWSSLTKKFLKALPYSLTSGQLSAISEIIWDLKRPVPMNRLLQ 603

[Close]

BLAST of Cucsa.234870 vs. TrEMBL
Match: W9RGH9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017352 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.6e-41
Identity = 81/108 (75.00%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 4   AYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQPHLN 63
           AY GIH+P SI EADLARKRL+FDEFFYLQL RLFQMLEGLGT+IEKD LLDKYR+P  N
Sbjct: 490 AYTGIHQPKSINEADLARKRLIFDEFFYLQLGRLFQMLEGLGTQIEKDGLLDKYRKPESN 549

Query: 64  AAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
           A+YM++W+ +T+K +K LPYSLT SQ+KA++EIIWDLK+P+PMNRLLQ
Sbjct: 550 ASYMREWSSITKKIVKTLPYSLTSSQLKAVSEIIWDLKQPVPMNRLLQ 597

[Close]

BLAST of Cucsa.234870 vs. TrEMBL
Match: A0A067KPA2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04694 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.2e-40
Identity = 80/111 (72.07%), Postives = 96/111 (86.49%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY  IH+P  ++EAD AR+RL+FDEFFYLQL RLFQMLEGLGTR+EKD LLDKYR+P
Sbjct: 249 LHDAYIRIHQPKHLEEADSARRRLIFDEFFYLQLGRLFQMLEGLGTRMEKDGLLDKYRKP 308

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            LNA YM+DW+ LT+KFLK LPYSLT SQ+ A++EIIWD+KRP+PMNRLLQ
Sbjct: 309 ELNALYMEDWSTLTKKFLKTLPYSLTSSQLSAVSEIIWDIKRPVPMNRLLQ 359

[Close]

BLAST of Cucsa.234870 vs. TAIR10
Match: AT2G01440.1 (AT2G01440.1 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 167.9 bits (424), Expect = 3.5e-42
Identity = 77/111 (69.37%), Postives = 97/111 (87.39%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY GIH P ++ EADLARKRL+FDEFFYLQLARL+QML+ LGT+IEKD LL+K+R+P
Sbjct: 438 LNDAYVGIHEPKTLDEADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKP 497

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            LN+ Y+++W+ LT+ FLKALPYSLT SQ+ A++EIIWDLKRP+PMNRLLQ
Sbjct: 498 VLNSVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQ 548

[Close]

BLAST of Cucsa.234870 vs. NCBI nr
Match: gi|778730665|ref|XP_011659838.1| (PREDICTED: uncharacterized protein LOC101221994 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-55
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           ++ AYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP
Sbjct: 440 LRDAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 499

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
           HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ
Sbjct: 500 HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 550

[Close]

BLAST of Cucsa.234870 vs. NCBI nr
Match: gi|659109546|ref|XP_008454766.1| (PREDICTED: uncharacterized protein LOC103495086 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-52
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           ++ AYNGIHRP SIKEADLARKR MFDEFFYLQLARLFQMLE LGTRIEKDCLLDKYRQP
Sbjct: 439 LRDAYNGIHRPKSIKEADLARKRFMFDEFFYLQLARLFQMLERLGTRIEKDCLLDKYRQP 498

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
           HLNAAYMKDWA LTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ
Sbjct: 499 HLNAAYMKDWACLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 549

[Close]

BLAST of Cucsa.234870 vs. NCBI nr
Match: gi|590696326|ref|XP_007045134.1| (DEAD/DEAH box RNA helicase family protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 178.3 bits (451), Expect = 7.2e-42
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY+GIH+P +++EADLARKRL+FDEFFYLQL RLFQMLEGLGT+IEKD LLD YR+P
Sbjct: 494 LHDAYSGIHQPKNLEEADLARKRLIFDEFFYLQLGRLFQMLEGLGTKIEKDGLLDMYRKP 553

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            +NAAYM++W+ LT+KFLKALPYSLT  Q+ AI+EIIWDLKRP+PMNRLLQ
Sbjct: 554 EVNAAYMEEWSSLTKKFLKALPYSLTSGQLSAISEIIWDLKRPVPMNRLLQ 604

[Close]

BLAST of Cucsa.234870 vs. NCBI nr
Match: gi|590696322|ref|XP_007045133.1| (DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 178.3 bits (451), Expect = 7.2e-42
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY+GIH+P +++EADLARKRL+FDEFFYLQL RLFQMLEGLGT+IEKD LLD YR+P
Sbjct: 494 LHDAYSGIHQPKNLEEADLARKRLIFDEFFYLQLGRLFQMLEGLGTKIEKDGLLDMYRKP 553

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            +NAAYM++W+ LT+KFLKALPYSLT  Q+ AI+EIIWDLKRP+PMNRLLQ
Sbjct: 554 EVNAAYMEEWSSLTKKFLKALPYSLTSGQLSAISEIIWDLKRPVPMNRLLQ 604

[Close]

BLAST of Cucsa.234870 vs. NCBI nr
Match: gi|823158386|ref|XP_012479050.1| (PREDICTED: uncharacterized protein LOC105794429 [Gossypium raimondii])

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-41
Identity = 82/111 (73.87%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MKQAYNGIHRPNSIKEADLARKRLMFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKYRQP 60
           +  AY GIH+P +I+EADLAR+R++FDEFFYLQL RLFQMLEGLGT+IEKD LL+KYR+P
Sbjct: 493 LNDAYVGIHQPKNIEEADLARRRIIFDEFFYLQLGRLFQMLEGLGTKIEKDGLLEKYRKP 552

Query: 61  HLNAAYMKDWAYLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQ 112
            +NAAYM++W+ LT+KFLKALPYSLT  Q+ AI+EIIWDLKRP+PMNRLLQ
Sbjct: 553 EVNAAYMEEWSSLTKKFLKALPYSLTSGQLSAISEIIWDLKRPVPMNRLLQ 603

The following BLAST results are available for this feature:

BLAST of Cucsa.234870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RECG_ARATH	6.1e-41	69.37	ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana G...	[more]
RECG_SYNY3	6.6e-11	37.84	ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
RECG_AQUAE	1.2e-07	36.36	ATP-dependent DNA helicase RecG OS=Aquifex aeolicus (strain VF5) GN=recG PE=3 SV...	[more]
RECG_TREPA	4.9e-06	31.48	ATP-dependent DNA helicase RecG OS=Treponema pallidum (strain Nichols) GN=recG P...	[more]
RECG_BACSU	6.4e-06	32.73	ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) GN=recG PE=3 S...	[more]

BLAST of Cucsa.234870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E7L6_THECC	5.0e-42	74.77	DEAD/DEAH box RNA helicase family protein isoform 2 (Fragment) OS=Theobroma caca...	[more]
A0A061E7H0_THECC	5.0e-42	74.77	DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_01...	[more]
A0A0D2SI40_GOSRA	1.5e-41	73.87	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161600 PE=4 SV=1	[more]
W9RGH9_9ROSA	5.6e-41	75.00	Uncharacterized protein OS=Morus notabilis GN=L484_017352 PE=4 SV=1	[more]
A0A067KPA2_JATCU	6.2e-40	72.07	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04694 PE=4 SV=1	[more]

BLAST of Cucsa.234870 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01440.1	3.5e-42	69.37	DEAD/DEAH box RNA helicase family protein	[more]

BLAST of Cucsa.234870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730665\|ref\|XP_011659838.1\|	2.0e-55	97.30	PREDICTED: uncharacterized protein LOC101221994 [Cucumis sativus]	[more]
gi\|659109546\|ref\|XP_008454766.1\|	2.7e-52	93.69	PREDICTED: uncharacterized protein LOC103495086 [Cucumis melo]	[more]
gi\|590696326\|ref\|XP_007045134.1\|	7.2e-42	74.77	DEAD/DEAH box RNA helicase family protein isoform 2, partial [Theobroma cacao]	[more]
gi\|590696322\|ref\|XP_007045133.1\|	7.2e-42	74.77	DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]	[more]
gi\|823158386\|ref\|XP_012479050.1\|	2.1e-41	73.87	PREDICTED: uncharacterized protein LOC105794429 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.234870.1	Cucsa.234870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..111 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.234870	ClCG07G006520	Watermelon (Charleston Gray)	cgywcgB410
Cucsa.234870	CSPI04G27720	Wild cucumber (PI 183967)	cgycpiB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.234870	Cucumber (Chinese Long) v2	cgycuB332
Cucsa.234870	Melon (DHL92) v3.5.1	cgymeB395