Cucsa.232140 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.232140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Chloroplast thylakoid membrane
Location	scaffold01989 : 233052 .. 235027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATCATCGCCGTTCTCCACCATGACAACAATCGGATTCCGCCTTATCTCGGTTTCTGCCGCCGTTTCACCACCTTCTCAAAGTCCGAACAATGATCAATTTCAAGAATGCCAACCGCTGCGCCATCAACTTCCGATTACTACATCTCGTAGAGGCCTCACCATGCTCTCATTTATCTCTGCGGTGCCGTCTCTCTTTCTTCCCGCTCCCGCCAGTGCTTTCGATATCGGCATTTGTAAGCACTAATCAACCGCAATCTTGATTCGTTAATTGCTTCGTTTTCTGTTCTTTATTTTGTTGTTGGAACCCTAGTTTATCGGTTTGTTTGCAGCAGGACCAAAGGATTGGTTGAAGGAGCAGAAGAAGAAGGCCTCCAAATTCCTCTTGGCACCAATTGAGGCCTCCAGAGACAGCCTTCAAGCAGTTTACCTTTTGCTTTGTAAGTCTTTCGCCGTCTCTTGTTTCTCCTTTATCTCATCTTTCGGTATTTTCTTACATTGCATCCGGTTGCAGCCAACGATTCCGATTACTCAAGTAAGGATATGGAGGATGTTCAAAGACTGCTCAAGTCGGCTGCAAGGGATTGCGTTTTGAAGGACAGGAATTCGTTTGTTCAATTCCAAGCGAGCACTGGAGTCGAGGTTCAATCTCACAGTGTTGCTTGTGTTTCTCTTTGTATTCGTTCTAAATTCCTTTTGTTTGTAAACCAGGAATTATCCAAATATAATGTGAAATTCAAACTATTATTTTAGCATCCCATGCTGCCATTCGTAGAATCTTTTGAACTTAATCAACATTGAACAAGGTTAGATTAGATATGTTGAAACGTTTTTCCAATATCCTAGCTTGAATGTTCTTTGGTTTCAACTTTTGAATTCCGCAGGTCTGTACATTCCAATTGATTGTGAAAAATGCAGCCTCCTTGCTTGGAAACAGAGATCCTATAAAACTAGAAGCTGAAAGTCTATTAAAAGATCTTGTAAGGTAACCTTCCTATCATTTCTTGATGCCTATTATATCATTTCTTCAATTGGATGGTGCTTTGATTTTGATAAGTAATAGTTACCTGTTTGATCGTCTAGTTTAGAAGGTAAGCTGCTTATCGTTCATTTGTTCAGTGGACGGTAAGAATAAGGGTCACCCTTTCTAAGGGTTATTGGATAAAAAAGTTCCAACAAAATTGAAGAGCTTTGTTATATCCTCTTTTCCAATAATCGAACAGTCATTACTTCAGTTTTTTTATTGCCATTGTAATATTTTCTCGCTTTATGATGCAGCTCTTTCACATCTCTGAACAGTCTTACATATGAAACTGATATTCAAGTCAATTCCAATAGGTATGTAAATCCTCATTTGAAGGCCTAAATACAGTTTGTCTTGAACAGCTGTCACATCTCAAATCAATATATCTTGATGGACAAATACTATTACTTAGTAATTAGATTATCCAAAATGTTTTCTTCCACATGACAAGGCTGCTGGATGGTGATCCATTTTTCCAATTTAGGCGGCCAAGTTTAGGTGGTCCATTTTCTTTGATTACATGACTTACATAAATTTCAAGACTAATGTGAAATGGTAGAGAAATGAAACTAGAAATGGATTCTACGGGAAATTGTACTTTGGCTGTGCATAATTGAAACATGCAATATCTTCCTAGAGGGTAGCAATGCTGTAATATTGAAGAAGCCATGGAAGTGATGGAATTGTAGTTTTGTTTGAAGACCATTACATCCATGCAACTCAGATACAATACTCTGCTTACTTACTTTAACGGAAGCCCTTTCATTTTGCTTTATATATTTGATATTGTAGGGAACTGTTCTTCCGAATTTACTATTTAGGTACAAAAAATTGTTTACTTATATATTTATTATTGTTTTGTTGCAGACAAAAAGTACTGGATGCACTGAATGATACCATGACTTCCCTCGACAAATTTGAGAAGGGTATTAAGGATTGTCTTGAAATTTAA

mRNA sequence

TTAATCATCGCCGTTCTCCACCATGACAACAATCGGATTCCGCCTTATCTCGGTTTCTGCCGCCGTTTCACCACCTTCTCAAAGTCCGAACAATGATCAATTTCAAGAATGCCAACCGCTGCGCCATCAACTTCCGATTACTACATCTCGTAGAGGCCTCACCATGCTCTCATTTATCTCTGCGGTGCCGTCTCTCTTTCTTCCCGCTCCCGCCAGTGCTTTCGATATCGGCATTTCAGGACCAAAGGATTGGTTGAAGGAGCAGAAGAAGAAGGCCTCCAAATTCCTCTTGGCACCAATTGAGGCCTCCAGAGACAGCCTTCAAGCAGTTTACCTTTTGCTTTCCAACGATTCCGATTACTCAAGTAAGGATATGGAGGATGTTCAAAGACTGCTCAAGTCGGCTGCAAGGGATTGCGTTTTGAAGGACAGGAATTCGTTTGTTCAATTCCAAGCGAGCACTGGAGTCGAGGTCTGTACATTCCAATTGATTGTGAAAAATGCAGCCTCCTTGCTTGGAAACAGAGATCCTATAAAACTAGAAGCTGAAAGTCTATTAAAAGATCTTCTCTTTCACATCTCTGAACAGTCTTACATATGAAACTGATATTCAAGTCAATTCCAATAGACAAAAAGTACTGGATGCACTGAATGATACCATGACTTCCCTCGACAAATTTGAGAAGGGTATTAAGGATTGTCTTGAAATTTAA

Coding sequence (CDS)

ATGACAACAATCGGATTCCGCCTTATCTCGGTTTCTGCCGCCGTTTCACCACCTTCTCAAAGTCCGAACAATGATCAATTTCAAGAATGCCAACCGCTGCGCCATCAACTTCCGATTACTACATCTCGTAGAGGCCTCACCATGCTCTCATTTATCTCTGCGGTGCCGTCTCTCTTTCTTCCCGCTCCCGCCAGTGCTTTCGATATCGGCATTTCAGGACCAAAGGATTGGTTGAAGGAGCAGAAGAAGAAGGCCTCCAAATTCCTCTTGGCACCAATTGAGGCCTCCAGAGACAGCCTTCAAGCAGTTTACCTTTTGCTTTCCAACGATTCCGATTACTCAAGTAAGGATATGGAGGATGTTCAAAGACTGCTCAAGTCGGCTGCAAGGGATTGCGTTTTGAAGGACAGGAATTCGTTTGTTCAATTCCAAGCGAGCACTGGAGTCGAGGTCTGTACATTCCAATTGATTGTGAAAAATGCAGCCTCCTTGCTTGGAAACAGAGATCCTATAAAACTAGAAGCTGAAAGTCTATTAAAAGATCTTCTCTTTCACATCTCTGAACAGTCTTACATATGA

Protein sequence

MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFLPAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMEDVQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLKDLLFHISEQSYI*

Homology

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BLAST of Cucsa.232140 vs. TrEMBL
Match: A0A0A0LPA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361670 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 5.5e-123
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1


Query: 1   MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFL 60
           MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFL
Sbjct: 1   MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFL 60

Query: 61  PAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMED 120
           PAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMED
Sbjct: 61  PAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMED 120

Query: 121 VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK 180
           VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK
Sbjct: 121 VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK 180

Query: 181 DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
           DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI
Sbjct: 181 DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 231

[Close]

BLAST of Cucsa.232140 vs. TrEMBL
Match: W9RSU4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001599 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.2e-70
Identity = 146/233 (62.66%), Postives = 177/233 (75.97%), Query Frame = 1


Query: 5   GFRLISVSAAVSPPSQS-PNNDQFQECQPLRH----QLPITTSRRGLTMLSFISAVPSLF 64
           G RLIS  A+  P   S P+N       P  H    Q PI  SRR L  LSF+S  PSLF
Sbjct: 204 GHRLISRPASPFPAFSSLPSNSNPPPLFPKEHHHRLQPPIAISRRDLASLSFLSLFPSLF 263

Query: 65  LPAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSN-DSDYSSKDM 124
            PAPA+AF IGISGPKDWLKEQKKKASKFLLAPI+ASR SL   YLLL+  DSDYS+KDM
Sbjct: 264 RPAPATAFSIGISGPKDWLKEQKKKASKFLLAPIDASRQSLHTAYLLLTTKDSDYSNKDM 323

Query: 125 EDVQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESL 184
           E++Q LL+SAARDCV  +RNSFV FQA+TGVEVCTF+LIVKNA+SLL N+DP+KL+AE++
Sbjct: 324 EEIQNLLRSAARDCVPGERNSFVAFQANTGVEVCTFRLIVKNASSLLQNKDPVKLQAEAI 383

Query: 185 LKDLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
           L  L+ SFTSL  +  + DI++ S RQ++ D+L  T++SLDKFE+GIKDCLE+
Sbjct: 384 LNYLIRSFTSLQDVANQADIKLPSERQRIADSLMATISSLDKFEQGIKDCLEV 436

[Close]

BLAST of Cucsa.232140 vs. TrEMBL
Match: A0A0D2NMF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G127900 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 9.5e-67
Identity = 143/231 (61.90%), Postives = 175/231 (75.76%), Query Frame = 1


Query: 2   TTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFLP 61
           T  G   I     +S  S S N  +    + LR       SRR    LS IS  PSL   
Sbjct: 39  TVAGLPPILTKPPISNQSLSINPSEENRQKVLR-----LISRRDAAFLSLISLFPSLLHT 98

Query: 62  APASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSN-DSDYSSKDMED 121
             ASAF IGISGPKDWLKEQK+K+SKFLLAPI+ASR SL +VYLLL + +S  S+ D+E+
Sbjct: 99  PHASAFSIGISGPKDWLKEQKRKSSKFLLAPIDASRQSLHSVYLLLMDKESTISNNDLEE 158

Query: 122 VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK 181
           VQ+LLKSAARDCV+++RNSFV FQA+TGVEVCTF+LIVKNA+SLL N++P+KLEAE++L 
Sbjct: 159 VQKLLKSAARDCVVQERNSFVAFQANTGVEVCTFRLIVKNASSLLENKNPVKLEAEAMLD 218

Query: 182 DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
           DL+SSFTSLN+L  E+DIQV S+RQ+V DAL DT+TSLDKFE+GIKDCLE+
Sbjct: 219 DLISSFTSLNTLANESDIQVASSRQRVADALKDTITSLDKFEQGIKDCLEV 264

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BLAST of Cucsa.232140 vs. TrEMBL
Match: A0A061FDJ4_THECC (Chloroplast thylakoid membrane OS=Theobroma cacao GN=TCM_034041 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 137/218 (62.84%), Postives = 175/218 (80.28%), Query Frame = 1


Query: 15  VSPPSQSPNNDQFQECQPLRHQL-PITTSRRGLTMLSFISAVPSLFLPAPASAFDIGISG 74
           +S  + S   +Q    +  RH +  +  SRR    L  IS  PSL  P+ ASAF IGISG
Sbjct: 29  ISNQNLSVRGNQENRREDQRHLVNQLQISRRDAAFLFLISLFPSLCQPSHASAFSIGISG 88

Query: 75  PKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMEDVQRLLKSAARDCV 134
           PK+WLKEQK+K+SKFL+API+ASR SL++ YLLL +    S+KD+E+VQ+LLKSAARDCV
Sbjct: 89  PKEWLKEQKRKSSKFLVAPIDASRQSLRSAYLLLMDKE--STKDLEEVQKLLKSAARDCV 148

Query: 135 LKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLKDLVSSFTSLNSLT 194
           +++RNSFV FQASTGVEVCTF+LIVKNA+SLL +++P+KLEAE++L DL+SSFTSLNSL 
Sbjct: 149 VQERNSFVAFQASTGVEVCTFRLIVKNASSLLEDKNPVKLEAEAMLDDLISSFTSLNSLA 208

Query: 195 YETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
            ETDIQV+S+RQKV DAL DT++SLDKFE+G+KDCLE+
Sbjct: 209 NETDIQVSSSRQKVADALMDTISSLDKFEQGVKDCLEV 244

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BLAST of Cucsa.232140 vs. TrEMBL
Match: E0CQC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12500 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.8e-65
Identity = 138/241 (57.26%), Postives = 184/241 (76.35%), Query Frame = 1


Query: 1   MTTIGFRLISVSAAVSP--PSQSP------NNDQFQECQPLRHQL-PITTSRRGLTMLSF 60
           M   GF L++ S++ +   P QSP      ++ Q QE + L+  L    T RR   +LSF
Sbjct: 1   MAVTGFHLVAFSSSPNALFPPQSPISSKDDHHQQKQEQKQLQSSLFGFKTYRRDAALLSF 60

Query: 61  ISAVPSLFLPAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLS-ND 120
           ++ +P L   +PA+A   GISGPKDWLK QK+KASKFLLAP++ASR+SL+  YLL + + 
Sbjct: 61  LALIPGLHRSSPATALTFGISGPKDWLKGQKRKASKFLLAPVDASRESLRTAYLLFTASG 120

Query: 121 SDYSSKDMEDVQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDP 180
           S+  +KD+E+VQRLLKSAARDCV ++RNSFV FQA+TGVEVCTF+LI+KNAASLL ++DP
Sbjct: 121 SNDPNKDLEEVQRLLKSAARDCVPQERNSFVAFQATTGVEVCTFRLILKNAASLLDDKDP 180

Query: 181 IKLEAESLLKDLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLE 232
           +KLEAE++L DL+SSFTSL+ +T ETD++  S RQKV DAL DT++SL+KFE+GIKDCLE
Sbjct: 181 VKLEAEAMLNDLISSFTSLDDVTNETDMEFASKRQKVADALMDTISSLNKFEQGIKDCLE 240

[Close]

BLAST of Cucsa.232140 vs. TAIR10
Match: AT5G42765.1 (AT5G42765.1 INVOLVED IN: biological_process unknown)

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-59
Identity = 121/229 (52.84%), Postives = 164/229 (71.62%), Query Frame = 1


Query: 7   RLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFLPA---- 66
           RLI +S      +  P          +   LP   SRR  T+L  +S+  SL L      
Sbjct: 3   RLIPISQPFFSSNTKPPPPPPIAAAQISDHLPQIISRRDATVL--LSSATSLLLTLSPTN 62

Query: 67  PASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMEDVQ 126
           PA AF +GISGPK+WLK+QKKK+S+FLLAPI+A+R +LQ+ YL L+++SDY+ KD+E++Q
Sbjct: 63  PAFAFSLGISGPKEWLKDQKKKSSRFLLAPIDATRQALQSAYLSLTSESDYTEKDLENLQ 122

Query: 127 RLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLKDL 186
            L KS+ARDCV K+R+S V FQ+ +GVEVCTF+L+VKNAASLL ++DP+KLEAE++L DL
Sbjct: 123 NLFKSSARDCVPKERSSLVDFQSKSGVEVCTFKLVVKNAASLLDDKDPVKLEAENILDDL 182

Query: 187 VSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
           V SF SL  LT   D+ + S+R+KV D + +T++ LDKFEKG+KDCLEI
Sbjct: 183 VRSFGSLIVLTNGVDMNLPSDRKKVADGVTETISYLDKFEKGVKDCLEI 229

[Close]

BLAST of Cucsa.232140 vs. NCBI nr
Match: gi|449469979|ref|XP_004152696.1| (PREDICTED: uncharacterized protein LOC101216764 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 7.8e-123
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1


Query: 1   MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFL 60
           MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFL
Sbjct: 1   MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFL 60

Query: 61  PAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMED 120
           PAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMED
Sbjct: 61  PAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMED 120

Query: 121 VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK 180
           VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK
Sbjct: 121 VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK 180

Query: 181 DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
           DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI
Sbjct: 181 DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 231

[Close]

BLAST of Cucsa.232140 vs. NCBI nr
Match: gi|659087941|ref|XP_008444717.1| (PREDICTED: uncharacterized protein LOC103487971 [Cucumis melo])

HSP 1 Score: 424.9 bits (1091), Expect = 9.3e-116
Identity = 218/231 (94.37%), Postives = 225/231 (97.40%), Query Frame = 1


Query: 1   MTTIGFRLISVSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFL 60
           MTTIGFRL SV AAVSPPSQSPN+DQFQE Q LRHQLPITTSRRGLTMLSFISA+PSLFL
Sbjct: 1   MTTIGFRLFSVPAAVSPPSQSPNSDQFQESQTLRHQLPITTSRRGLTMLSFISAMPSLFL 60

Query: 61  PAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSNDSDYSSKDMED 120
           PAPASAFDIGISGPKDWLKEQKKK+SKFLLAPIEASRDSLQ VYLLLSNDSDYS+KDMED
Sbjct: 61  PAPASAFDIGISGPKDWLKEQKKKSSKFLLAPIEASRDSLQTVYLLLSNDSDYSNKDMED 120

Query: 121 VQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLK 180
           VQRLLKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNAASLLGN+DPIKLEAE+LLK
Sbjct: 121 VQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNAASLLGNKDPIKLEAENLLK 180

Query: 181 DLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
           DLVSSFTSLNSL YETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI
Sbjct: 181 DLVSSFTSLNSLAYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 231

[Close]

BLAST of Cucsa.232140 vs. NCBI nr
Match: gi|703102090|ref|XP_010097367.1| (hypothetical protein L484_001599 [Morus notabilis])

HSP 1 Score: 271.6 bits (693), Expect = 1.3e-69
Identity = 146/233 (62.66%), Postives = 177/233 (75.97%), Query Frame = 1


Query: 5   GFRLISVSAAVSPPSQS-PNNDQFQECQPLRH----QLPITTSRRGLTMLSFISAVPSLF 64
           G RLIS  A+  P   S P+N       P  H    Q PI  SRR L  LSF+S  PSLF
Sbjct: 204 GHRLISRPASPFPAFSSLPSNSNPPPLFPKEHHHRLQPPIAISRRDLASLSFLSLFPSLF 263

Query: 65  LPAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVYLLLSN-DSDYSSKDM 124
            PAPA+AF IGISGPKDWLKEQKKKASKFLLAPI+ASR SL   YLLL+  DSDYS+KDM
Sbjct: 264 RPAPATAFSIGISGPKDWLKEQKKKASKFLLAPIDASRQSLHTAYLLLTTKDSDYSNKDM 323

Query: 125 EDVQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESL 184
           E++Q LL+SAARDCV  +RNSFV FQA+TGVEVCTF+LIVKNA+SLL N+DP+KL+AE++
Sbjct: 324 EEIQNLLRSAARDCVPGERNSFVAFQANTGVEVCTFRLIVKNASSLLQNKDPVKLQAEAI 383

Query: 185 LKDLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLEI 232
           L  L+ SFTSL  +  + DI++ S RQ++ D+L  T++SLDKFE+GIKDCLE+
Sbjct: 384 LNYLIRSFTSLQDVANQADIKLPSERQRIADSLMATISSLDKFEQGIKDCLEV 436

[Close]

BLAST of Cucsa.232140 vs. NCBI nr
Match: gi|694316994|ref|XP_009336256.1| (PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 262.7 bits (670), Expect = 6.1e-67
Identity = 142/237 (59.92%), Postives = 179/237 (75.53%), Query Frame = 1


Query: 1   MTTIGFRLIS------VSAAVSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISA 60
           M     RLIS      V+A  S P +S          P+  QLP   SRR + +LS ++ 
Sbjct: 37  MAIASHRLISSSYSPTVTAISSFPPKSKTLISNPNASPIL-QLP-KRSRRDVALLSLVAL 96

Query: 61  VPSLFLPAPASAFDIGISGPKDWLKEQKKKASKFLLAPIEASRDSLQAVY-LLLSNDSDY 120
           +PSLF P  AS F  GISGPKDWL+EQKKKAS+FLLAPI+ASR+SL A + LL + DSDY
Sbjct: 97  IPSLFRPDAASGFSFGISGPKDWLREQKKKASRFLLAPIDASRESLVAAHRLLTATDSDY 156

Query: 121 SSKDMEDVQRLLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKL 180
           ++K+ME+V+RL +SAARDCV++DRNSFV FQA+TGVEVCTF+L+VKNA+SLLG++DP+KL
Sbjct: 157 TNKEMEEVRRLFRSAARDCVIEDRNSFVAFQANTGVEVCTFRLVVKNASSLLGDKDPVKL 216

Query: 181 EAESLLKDLVSSFTSLNSLTYETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLE 231
           EAES+L DLV SFTSLN L  ETD Q  + R+KV D+L DT++SLDKFE+GIKDCL+
Sbjct: 217 EAESILNDLVRSFTSLNGLVNETDFQFATERKKVADSLMDTLSSLDKFEQGIKDCLD 271

[Close]

BLAST of Cucsa.232140 vs. NCBI nr
Match: gi|694378681|ref|XP_009365567.1| (PREDICTED: uncharacterized protein LOC103955406 [Pyrus x bretschneideri])

HSP 1 Score: 262.3 bits (669), Expect = 8.0e-67
Identity = 137/217 (63.13%), Postives = 171/217 (78.80%), Query Frame = 1


Query: 15  VSPPSQSPNNDQFQECQPLRHQLPITTSRRGLTMLSFISAVPSLFLPAPASAFDIGISGP 74
           +S P  SPN            QLP   SRR + +LS I+ +PSL  P PAS    GISGP
Sbjct: 31  ISNPHASPNL-----------QLP-KRSRRDVALLSLIALIPSLVRPDPASGLSFGISGP 90

Query: 75  KDWLKEQKKKASKFLLAPIEASRDSLQAVY-LLLSNDSDYSSKDMEDVQRLLKSAARDCV 134
           KDWL+EQKKKAS+FLLAPI+ASR+SL A + LL + +SDY++K+ME+VQRL +SAARDCV
Sbjct: 91  KDWLREQKKKASRFLLAPIDASRESLVAAHQLLTATNSDYTNKEMEEVQRLFRSAARDCV 150

Query: 135 LKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNRDPIKLEAESLLKDLVSSFTSLNSLT 194
           ++DRNSFV FQA+TGVEVCTF L+VKNA+SLLG++DP+KLEAESLL DL+ SFTSLN L 
Sbjct: 151 VEDRNSFVAFQANTGVEVCTFLLVVKNASSLLGDKDPVKLEAESLLNDLIRSFTSLNGLV 210

Query: 195 YETDIQVNSNRQKVLDALNDTMTSLDKFEKGIKDCLE 231
            ETD+Q ++ R+KV D+L DT++SLDKFE+GIKDCLE
Sbjct: 211 NETDVQFSAERKKVADSLMDTISSLDKFEQGIKDCLE 235

The following BLAST results are available for this feature:

BLAST of Cucsa.232140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPA8_CUCSA	5.5e-123	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361670 PE=4 SV=1	[more]
W9RSU4_9ROSA	9.2e-70	62.66	Uncharacterized protein OS=Morus notabilis GN=L484_001599 PE=4 SV=1	[more]
A0A0D2NMF0_GOSRA	9.5e-67	61.90	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G127900 PE=4 SV=1	[more]
A0A061FDJ4_THECC	2.1e-66	62.84	Chloroplast thylakoid membrane OS=Theobroma cacao GN=TCM_034041 PE=4 SV=1	[more]
E0CQC9_VITVI	1.8e-65	57.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12500 PE=4 SV=...	[more]

BLAST of Cucsa.232140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42765.1	1.0e-59	52.84	INVOLVED IN: biological_process unknown	[more]

BLAST of Cucsa.232140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469979\|ref\|XP_004152696.1\|	7.8e-123	100.00	PREDICTED: uncharacterized protein LOC101216764 [Cucumis sativus]	[more]
gi\|659087941\|ref\|XP_008444717.1\|	9.3e-116	94.37	PREDICTED: uncharacterized protein LOC103487971 [Cucumis melo]	[more]
gi\|703102090\|ref\|XP_010097367.1\|	1.3e-69	62.66	hypothetical protein L484_001599 [Morus notabilis]	[more]
gi\|694316994\|ref\|XP_009336256.1\|	6.1e-67	59.92	PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneide...	[more]
gi\|694378681\|ref\|XP_009365567.1\|	8.0e-67	63.13	PREDICTED: uncharacterized protein LOC103955406 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.232140.2	Cucsa.232140.2	mRNA
Cucsa.232140.1	Cucsa.232140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36398	FAMILY NOT NAMED	coord: 1..183 score: 1.1
None	No IPR available	PANTHER	PTHR36398:SF1	SUBFAMILY NOT NAMED	coord: 1..183 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.232140	Cla022492	Watermelon (97103) v1	cgywmB433
Cucsa.232140	Csa2G361670	Cucumber (Chinese Long) v2	cgycuB326
Cucsa.232140	MELO3C010945	Melon (DHL92) v3.5.1	cgymeB389
Cucsa.232140	ClCG08G015050	Watermelon (Charleston Gray)	cgywcgB407
Cucsa.232140	CSPI02G20060	Wild cucumber (PI 183967)	cgycpiB341
Cucsa.232140	CmaCh05G002420	Cucurbita maxima (Rimu)	cgycmaB0642
Cucsa.232140	CmoCh05G002500	Cucurbita moschata (Rifu)	cgycmoB0643
Cucsa.232140	Lsi08G013930	Bottle gourd (USVL1VR-Ls)	cgylsiB379
Cucsa.232140	Cp4.1LG07g04230	Cucurbita pepo (Zucchini)	cgycpeB0614
Cucsa.232140	Cp4.1LG11g02020	Cucurbita pepo (Zucchini)	cgycpeB0611
Cucsa.232140	MELO3C010945.2	Melon (DHL92) v3.6.1	cgymedB387
Cucsa.232140	CsaV3_2G028730	Cucumber (Chinese Long) v3	cgycucB347
Cucsa.232140	Cla97C08G158630	Watermelon (97103) v2	cgywmbB409
Cucsa.232140	Bhi04G000147	Wax gourd	cgywgoB459
Cucsa.232140	Carg11799	Silver-seed gourd	carcgyB0222
Cucsa.232140	Carg04053	Silver-seed gourd	carcgyB1094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.232140	Silver-seed gourd	carcgyB0124
Cucsa.232140	Silver-seed gourd	carcgyB1065
Cucsa.232140	Cucumber (Chinese Long) v3	cgycucB348
Cucsa.232140	Watermelon (97103) v2	cgywmbB407
Cucsa.232140	Watermelon (97103) v2	cgywmbB408
Cucsa.232140	Cucumber (Gy14) v1	cgycgyB120
Cucsa.232140	Cucurbita maxima (Rimu)	cgycmaB0637
Cucsa.232140	Cucurbita maxima (Rimu)	cgycmaB0638
Cucsa.232140	Cucurbita maxima (Rimu)	cgycmaB0639
Cucsa.232140	Cucurbita maxima (Rimu)	cgycmaB0640
Cucsa.232140	Cucurbita moschata (Rifu)	cgycmoB0640
Cucsa.232140	Cucurbita moschata (Rifu)	cgycmoB0641
Cucsa.232140	Cucurbita moschata (Rifu)	cgycmoB0642
Cucsa.232140	Wild cucumber (PI 183967)	cgycpiB342
Cucsa.232140	Cucumber (Chinese Long) v2	cgycuB327
Cucsa.232140	Melon (DHL92) v3.5.1	cgymeB390
Cucsa.232140	Watermelon (Charleston Gray)	cgywcgB406
Cucsa.232140	Watermelon (97103) v1	cgywmB434
Cucsa.232140	Cucurbita pepo (Zucchini)	cgycpeB0610
Cucsa.232140	Cucurbita pepo (Zucchini)	cgycpeB0612
Cucsa.232140	Cucurbita pepo (Zucchini)	cgycpeB0613
Cucsa.232140	Bottle gourd (USVL1VR-Ls)	cgylsiB375
Cucsa.232140	Bottle gourd (USVL1VR-Ls)	cgylsiB377
Cucsa.232140	Melon (DHL92) v3.6.1	cgymedB388
Cucsa.232140	Melon (DHL92) v3.6.1	cgymedB391