Cucsa.231970 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.231970
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01989 : 129676 .. 130288 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCTCTACAAATCTTCATCAACAACTTCTTCATCTCGAAAACCAATTGCTTGTTGGCTCCGGCAGCGGCCATGCTTGGACTCCCGACCTCTCTTTGTAAGTACTCGACATACGTATCATCATACTTTTTTTtATCAAGTAACTCACCAGCAAGAGGGATGAGGGATGGAGATCATAATTGTTAACTAGTTGAGCTATGTTCAAGTTTACATCAACATATAAAAGATAATCTTTGTTTGTAGGTCACCAAATTGTGAGATTGAACCAATTTTtCATTTCCAAGATTTGAATCCAGCCATTGATATTGCACAAAGCTTTACAAGTTTGCAGCATTATAATTCCCATGGAATTAGCAAAGAGAGAAGATATGAAGATCAAGAAGGGAAAAGGGAGGAGAAAAAGGACTCAAGTTCTAGTAATTCTCTAAAAAAAATCAATGATAATGAAAGTTTGAAAAGTCATGATTATTATTATTATTATCATTCTTCAAATTTTGAAGAAGAAGATGATCAAATGAAGAAGATTGGACAAAGCTGTTGTTGCAGCAAAATTCATCCAACTGTTAATGTTTCATCAAGAAATAGTTATAAGCCATTGATGACGACAGA

mRNA sequence

ATGGATTTCTCTACAAATCTTCATCAACAACTTCTTCATCTCGAAAACCAATTGCTTGTTGGCTCCGGCAGCGGCCATGCTTGGACTCCCGACCTCTCTTTGTCACCAAATTGTGAGATTGAACCAATTTTTCATTTCCAAGATTTGAATCCAGCCATTGATATTGCACAAAGCTTTACAAGTTTGCAGCATTATAATTCCCATGGAATTAGCAAAGAGAGAAGATATGAAGATCAAGAAGGGAAAAGGGAGGAGAAAAAGGACTCAAGTTCTAGTAATTCTCTAAAAAAAATCAATGATAATGAAAGTTTGAAAAGTCATGATTATTATTATTATTATCATTCTTCAAATTTTGAAGAAGAAGATGATCAAATGAAGAAGATTGGACAAAGCTGTTGTTGCAGCAAAATTCATCCAACTGTTAATGTTTCATCAAGAAATAGTTATAAGCCATTGATGACGACAGA

Coding sequence (CDS)

ATGGATTTCTCTACAAATCTTCATCAACAACTTCTTCATCTCGAAAACCAATTGCTTGTTGGCTCCGGCAGCGGCCATGCTTGGACTCCCGACCTCTCTTTGTCACCAAATTGTGAGATTGAACCAATTTTtCATTTCCAAGATTTGAATCCAGCCATTGATATTGCACAAAGCTTTACAAGTTTGCAGCATTATAATTCCCATGGAATTAGCAAAGAGAGAAGATATGAAGATCAAGAAGGGAAAAGGGAGGAGAAAAAGGACTCAAGTTCTAGTAATTCTCTAAAAAAAATCAATGATAATGAAAGTTTGAAAAGTCATGATTATTATTATTATTATCATTCTTCAAATTTTGAAGAAGAAGATGATCAAATGAAGAAGATTGGACAAAGCTGTTGTTGCAGCAAAATTCATCCAACTGTTAATGTTTCATCAAGAAATAGTTATAAGCCATTGATGACGACAGA

Protein sequence

MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFTSLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEEEDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTTX
Homology
[Close]
BLAST of Cucsa.231970 vs. TrEMBL
Match: A0A0A0LPC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361860 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 2.8e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60
           MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT
Sbjct: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60

Query: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120
           SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE
Sbjct: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120

Query: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 156
           EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT
Sbjct: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 155

[Close]
BLAST of Cucsa.231970 vs. NCBI nr
Match: gi|778671425|ref|XP_011649635.1| (PREDICTED: transcription factor bHLH110-like isoform X2 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 3.9e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60
           MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT
Sbjct: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60

Query: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120
           SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE
Sbjct: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120

Query: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 156
           EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT
Sbjct: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 155

[Close]
BLAST of Cucsa.231970 vs. NCBI nr
Match: gi|778671422|ref|XP_011649634.1| (PREDICTED: transcription factor bHLH110-like isoform X1 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 3.9e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60
           MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT
Sbjct: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60

Query: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120
           SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE
Sbjct: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120

Query: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 156
           EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT
Sbjct: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 155

[Close]
BLAST of Cucsa.231970 vs. NCBI nr
Match: gi|659087990|ref|XP_008444743.1| (PREDICTED: transcription factor bHLH110 isoform X2 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-70
Identity = 136/155 (87.74%), Postives = 142/155 (91.61%), Query Frame = 1 

Query: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60
           MDFSTNLHQQLL LENQLLVGSGSGHAWTPDLSLSPNCE EPIFHFQDLNPAID AQSFT
Sbjct: 1   MDFSTNLHQQLLQLENQLLVGSGSGHAWTPDLSLSPNCEFEPIFHFQDLNPAID-AQSFT 60

Query: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120
           SLQHYNSHGISKE+RYED+EG    KKDSSS+NS KK N++ESLKSHDYYYYYHSS F E
Sbjct: 61  SLQHYNSHGISKEKRYEDKEG----KKDSSSNNSPKKTNNDESLKSHDYYYYYHSSKF-E 120

Query: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 156
           EDDQMKKIGQSCCCSKIHPTVNVSSRN+YKPL  T
Sbjct: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNNYKPLTMT 149

[Close]
BLAST of Cucsa.231970 vs. NCBI nr
Match: gi|659087988|ref|XP_008444742.1| (PREDICTED: transcription factor bHLH110 isoform X1 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-70
Identity = 136/155 (87.74%), Postives = 142/155 (91.61%), Query Frame = 1 

Query: 1   MDFSTNLHQQLLHLENQLLVGSGSGHAWTPDLSLSPNCEIEPIFHFQDLNPAIDIAQSFT 60
           MDFSTNLHQQLL LENQLLVGSGSGHAWTPDLSLSPNCE EPIFHFQDLNPAID AQSFT
Sbjct: 1   MDFSTNLHQQLLQLENQLLVGSGSGHAWTPDLSLSPNCEFEPIFHFQDLNPAID-AQSFT 60

Query: 61  SLQHYNSHGISKERRYEDQEGKREEKKDSSSSNSLKKINDNESLKSHDYYYYYHSSNFEE 120
           SLQHYNSHGISKE+RYED+EG    KKDSSS+NS KK N++ESLKSHDYYYYYHSS F E
Sbjct: 61  SLQHYNSHGISKEKRYEDKEG----KKDSSSNNSPKKTNNDESLKSHDYYYYYHSSKF-E 120

Query: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNSYKPLMTT 156
           EDDQMKKIGQSCCCSKIHPTVNVSSRN+YKPL  T
Sbjct: 121 EDDQMKKIGQSCCCSKIHPTVNVSSRNNYKPLTMT 149

The following BLAST results are available for this feature:
BLAST of Cucsa.231970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPC1_CUCSA2.8e-86100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361860 PE=4 SV=1[more]
BLAST of Cucsa.231970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778671425|ref|XP_011649635.1|3.9e-86100.00PREDICTED: transcription factor bHLH110-like isoform X2 [Cucumis sativus][more]
gi|778671422|ref|XP_011649634.1|3.9e-86100.00PREDICTED: transcription factor bHLH110-like isoform X1 [Cucumis sativus][more]
gi|659087990|ref|XP_008444743.1|1.0e-7087.74PREDICTED: transcription factor bHLH110 isoform X2 [Cucumis melo][more]
gi|659087988|ref|XP_008444742.1|1.0e-7087.74PREDICTED: transcription factor bHLH110 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.231970.1Cucsa.231970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.231970Csa2G361860Cucumber (Chinese Long) v2cgycuB326
Cucsa.231970MELO3C010963Melon (DHL92) v3.5.1cgymeB389
Cucsa.231970ClCG08G014800Watermelon (Charleston Gray)cgywcgB407
Cucsa.231970CSPI02G20290Wild cucumber (PI 183967)cgycpiB341
Cucsa.231970CmaCh12G004480Cucurbita maxima (Rimu)cgycmaB0638
Cucsa.231970CmoCh12G003980Cucurbita moschata (Rifu)cgycmoB0641
Cucsa.231970Lsi08G013750Bottle gourd (USVL1VR-Ls)cgylsiB379
Cucsa.231970Cp4.1LG07g03970Cucurbita pepo (Zucchini)cgycpeB0614
Cucsa.231970MELO3C010963.2Melon (DHL92) v3.6.1cgymedB387
Cucsa.231970CsaV3_2G028950Cucumber (Chinese Long) v3cgycucB347
Cucsa.231970Cla97C08G158390Watermelon (97103) v2cgywmbB409
Cucsa.231970Carg04031Silver-seed gourdcarcgyB1094
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.231970Watermelon (97103) v2cgywmbB407
Cucsa.231970Watermelon (97103) v2cgywmbB408
Cucsa.231970Wax gourdcgywgoB459
Cucsa.231970Cucumber (Gy14) v1cgycgyB120
Cucsa.231970Cucurbita maxima (Rimu)cgycmaB0637
Cucsa.231970Cucurbita maxima (Rimu)cgycmaB0639
Cucsa.231970Cucurbita maxima (Rimu)cgycmaB0640
Cucsa.231970Cucurbita maxima (Rimu)cgycmaB0642
Cucsa.231970Cucurbita moschata (Rifu)cgycmoB0640
Cucsa.231970Cucurbita moschata (Rifu)cgycmoB0642
Cucsa.231970Cucurbita moschata (Rifu)cgycmoB0643
Cucsa.231970Wild cucumber (PI 183967)cgycpiB342
Cucsa.231970Cucumber (Chinese Long) v2cgycuB327
Cucsa.231970Melon (DHL92) v3.5.1cgymeB390
Cucsa.231970Watermelon (Charleston Gray)cgywcgB406
Cucsa.231970Watermelon (97103) v1cgywmB433
Cucsa.231970Watermelon (97103) v1cgywmB434
Cucsa.231970Cucurbita pepo (Zucchini)cgycpeB0610
Cucsa.231970Cucurbita pepo (Zucchini)cgycpeB0611
Cucsa.231970Cucurbita pepo (Zucchini)cgycpeB0612
Cucsa.231970Cucurbita pepo (Zucchini)cgycpeB0613
Cucsa.231970Bottle gourd (USVL1VR-Ls)cgylsiB375
Cucsa.231970Bottle gourd (USVL1VR-Ls)cgylsiB377
Cucsa.231970Melon (DHL92) v3.6.1cgymedB388
Cucsa.231970Melon (DHL92) v3.6.1cgymedB391
Cucsa.231970Silver-seed gourdcarcgyB0124
Cucsa.231970Silver-seed gourdcarcgyB0222
Cucsa.231970Silver-seed gourdcarcgyB1065
Cucsa.231970Cucumber (Chinese Long) v3cgycucB348