Cucsa.227000 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.227000
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDNA-directed RNA polymerase subunit
Locationscaffold01910 : 112025 .. 113003 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATATGTGTTATATCTTTTCTCAGAACGGGACTTCAAGCTGTTATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGGAAATGTATTATTGAAGAGATAAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGTAAGTACGTTGTGTTGGGTTACAAAAAATTACATGTTGTGTATAGGTTGAGGCAATTAAATATTTTTGCTGTGTGACAGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGATCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGATAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGGTATATCTTCTCCTACTGGAACAGAACTCAGTTCATTATTATTATTATTGAGCATTGATTTCATGGGCAGCATCTGAACGCTTTTCTTAATGCCTGGAGTGTGATTTAACATAGTTTATGAGCAATTAGCTGAGAGAATTCTGTGTTCAAATTCCTACAATGTTATTTACTCCCCACTAATATTGATTTATACTTGTTGAACCTTCTAAATATTTCAAGCCTACAAGTGAGGACAGTGTTAGATGATATAATATTAGATTTACATTCATCCCTCAGTTTAAGTTTTTtAGTCAATTCATGATTCAGGTTCCAACATTATGGTTGAGTATTAACATCAGTTTAAATAATTTTGCATTTTACAAACTTTTAGTTTACATATTTTGAAGCTAATTGAGCTTTGTTTTTAACAGAGTTTCTGTGCCGCAACAATTACCTTATGGACCACCTGCAATTCTATCTTGA

mRNA sequence

ATGTATATATGTGTTATATCTTTTCTCAGAACGGGACTTCAAGCTGTTATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGGAAATGTATTATTGAAGAGATAAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGATCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGATAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGAGTTTCTGTGCCGCAACAATTACCTTATGGACCACCTGCAATTCTATCTTGA

Coding sequence (CDS)

ATGTATATATGTGTTATATCTTTTCTCAGAACGGGACTTCAAGCTGTTATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGGAAATGTATTATTGAAGAGATAAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGATCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGATAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGAGTTTCTGTGCCGCAACAATTACCTTATGGACCACCTGCAATTCTATCTTGA

Protein sequence

MYICVISFLRTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS*
Homology
[Close]
BLAST of Cucsa.227000 vs. Swiss-Prot
Match: NRPC1_ARATH (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.1e-50
Identity = 101/152 (66.45%), Postives = 120/152 (78.95%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            T L AVMGT G++G  T SN+++EV + LGIEAAR  II+EI   M +HGMSIDIRHMML
Sbjct: 1225 TNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMML 1284

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            L D+MT+RGEVLGI R GIQKMDKSVLM ASFE+T DHLF+A+ +G+ D IEGV+ECVIM
Sbjct: 1285 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIM 1344

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
            GIPM LGTG+LKV QR     +L YGP  I+S
Sbjct: 1345 GIPMKLGTGILKVLQRTDDLPKLKYGPDPIIS 1376

[Close]
BLAST of Cucsa.227000 vs. Swiss-Prot
Match: RPC1_CHICK (DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.1e-44
Identity = 90/145 (62.07%), Postives = 110/145 (75.86%), Query Frame = 1 

Query: 13   LQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLG 72
            L+AVM T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGMSID RH+MLL 
Sbjct: 1232 LRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLS 1291

Query: 73   DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGI 132
            DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSEC+IMGI
Sbjct: 1292 DLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGI 1351

Query: 133  PMPLGTGMLKVRQRVSVPQQLPYGP 158
            PM +GTG+ K+  +       P  P
Sbjct: 1352 PMNIGTGLFKLLHKADKESTPPRRP 1376

[Close]
BLAST of Cucsa.227000 vs. Swiss-Prot
Match: RPC1_BOVIN (DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.7e-44
Identity = 90/145 (62.07%), Postives = 111/145 (76.55%), Query Frame = 1 

Query: 13   LQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLG 72
            L+AVM T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGMSID RH+MLL 
Sbjct: 1232 LRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLS 1291

Query: 73   DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGI 132
            DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSEC+IMGI
Sbjct: 1292 DLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGI 1351

Query: 133  PMPLGTGMLKVRQRVSVPQQLPYGP 158
            PM +GTG+ K+  + +     P  P
Sbjct: 1352 PMNIGTGLFKLLHKANRDPSPPRRP 1376

[Close]
BLAST of Cucsa.227000 vs. Swiss-Prot
Match: RPC1_HUMAN (DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 8.7e-44
Identity = 90/145 (62.07%), Postives = 110/145 (75.86%), Query Frame = 1 

Query: 13   LQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLG 72
            L+AVM T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGMSID RH+MLL 
Sbjct: 1232 LRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLS 1291

Query: 73   DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGI 132
            DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSEC+IMGI
Sbjct: 1292 DLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGI 1351

Query: 133  PMPLGTGMLKVRQRVSVPQQLPYGP 158
            PM +GTG+ K+  +       P  P
Sbjct: 1352 PMNIGTGLFKLLHKADRDPNPPKRP 1376

[Close]
BLAST of Cucsa.227000 vs. Swiss-Prot
Match: RPC1_DICDI (DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr3a PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-43
Identity = 86/134 (64.18%), Postives = 107/134 (79.85%), Query Frame = 1 

Query: 13   LQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLG 72
            L+AVM T G+ G +T SNHI+E +  LGIE AR  I+ EI   M SHGMSIDIRH+MLL 
Sbjct: 1302 LRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLA 1361

Query: 73   DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGI 132
            DLM+F+GE+LGITRFGI KM +SVLMLASFEKT DHLF+A+V+ R D I GVSEC+IMG+
Sbjct: 1362 DLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGV 1421

Query: 133  PMPLGTGMLKVRQR 147
             +PLGTG+ K+ ++
Sbjct: 1422 VIPLGTGLFKLLRK 1435

[Close]
BLAST of Cucsa.227000 vs. TrEMBL
Match: A0A0A0LXJ4_CUCSA (DNA-directed RNA polymerase OS=Cucumis sativus GN=Csa_1G083760 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.0e-80
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 10  RTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMM 69
           RTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMM
Sbjct: 35  RTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMM 94

Query: 70  LLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVI 129
           LLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVI
Sbjct: 95  LLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVI 154

Query: 130 MGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
           MGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS
Sbjct: 155 MGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 187

[Close]
BLAST of Cucsa.227000 vs. TrEMBL
Match: W9QSP3_9ROSA (DNA-directed RNA polymerase subunit OS=Morus notabilis GN=L484_007172 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-65
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            TGL  VMGTEGVDG NTK+NHIIEVQQ LGIEAAR CII+EI+YTM+SHGMSID RHMML
Sbjct: 1027 TGLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMML 1086

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            L D+MT RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR+DKIEGVSEC+IM
Sbjct: 1087 LADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIM 1146

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
            GIPM +GTGM+KVRQRV VP  L YGP  ILS
Sbjct: 1147 GIPMQIGTGMIKVRQRVDVPPMLSYGPKPILS 1178

[Close]
BLAST of Cucsa.227000 vs. TrEMBL
Match: V4SLI9_9ROSI (DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 8.1e-65
Identity = 125/148 (84.46%), Postives = 134/148 (90.54%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            TGLQAVMG EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMML
Sbjct: 1245 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1304

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            L DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IM
Sbjct: 1305 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1364

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPP 159
            GIPMPLGTG+LK+RQR +VP  L YG P
Sbjct: 1365 GIPMPLGTGILKIRQRDAVPPMLKYGAP 1392

[Close]
BLAST of Cucsa.227000 vs. TrEMBL
Match: A0A067GCD6_CITSI (DNA-directed RNA polymerase subunit OS=Citrus sinensis GN=CISIN_1g000828mg PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 8.1e-65
Identity = 125/148 (84.46%), Postives = 134/148 (90.54%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            TGLQAVMG EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMML
Sbjct: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            L DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IM
Sbjct: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPP 159
            GIPMPLGTG+LK+RQR +VP  L YG P
Sbjct: 1233 GIPMPLGTGILKIRQRDAVPPMLKYGAP 1260

[Close]
BLAST of Cucsa.227000 vs. TrEMBL
Match: F6GTW0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03730 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.6e-63
Identity = 127/152 (83.55%), Postives = 134/152 (88.16%), Query Frame = 1 

Query: 11  TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
           TGLQ VMGTEGV G  T SNHIIEVQQ LGIEAARKCII EI+YTM SHGMSIDIRHMML
Sbjct: 180 TGLQTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMML 239

Query: 71  LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
           L DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV+GRDDKIEGVSEC+IM
Sbjct: 240 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIM 299

Query: 131 GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
           GIPM LGTG+LKVRQR+    +L YG   I+S
Sbjct: 300 GIPMQLGTGILKVRQRLQQVPELSYGLDPIIS 331

[Close]
BLAST of Cucsa.227000 vs. TAIR10
Match: AT5G60040.2 (AT5G60040.2 nuclear RNA polymerase C1)

HSP 1 Score: 198.0 bits (502), Expect = 4.6e-51
Identity = 101/152 (66.45%), Postives = 120/152 (78.95%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            T L AVMGT G++G  T SN+++EV + LGIEAAR  II+EI   M +HGMSIDIRHMML
Sbjct: 1240 TNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMML 1299

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            L D+MT+RGEVLGI R GIQKMDKSVLM ASFE+T DHLF+A+ +G+ D IEGV+ECVIM
Sbjct: 1300 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIM 1359

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
            GIPM LGTG+LKV QR     +L YGP  I+S
Sbjct: 1360 GIPMKLGTGILKVLQRTDDLPKLKYGPDPIIS 1391

[Close]
BLAST of Cucsa.227000 vs. TAIR10
Match: AT4G35800.1 (AT4G35800.1 RNA polymerase II large subunit)

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-24
Identity = 54/127 (42.52%), Postives = 81/127 (63.78%), Query Frame = 1 

Query: 13   LQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLG 72
            L AVM  E VD   T SNH+IE+ +VLGIEA R+ +++E++  +   G  ++ RH+ +L 
Sbjct: 1334 LLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILC 1393

Query: 73   DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGI 132
            D MT+RG ++ ITR GI + D   LM  SFE+T D L +A+     D + GV+E +++G 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 133  PMPLGTG 140
              P+GTG
Sbjct: 1454 LAPIGTG 1460

[Close]
BLAST of Cucsa.227000 vs. TAIR10
Match: AT3G57660.1 (AT3G57660.1 nuclear RNA polymerase A1)

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-15
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 1 

Query: 29   SNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFG 88
            SN I ++  + G+EAAR+ II EI +  +S+G+S+ IRH+ L+ D MTF G    ++R G
Sbjct: 1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMG 1609

Query: 89   IQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVS 148
                  S     +FE     +  A+  G  D +E  S  + +G+P   GTG   + QRV 
Sbjct: 1610 GIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1669

Query: 149  V 150
            +
Sbjct: 1670 L 1670

[Close]
BLAST of Cucsa.227000 vs. NCBI nr
Match: gi|700209630|gb|KGN64726.1| (DNA-directed RNA polymerase [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 5.8e-80
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 10  RTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMM 69
           RTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMM
Sbjct: 35  RTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMM 94

Query: 70  LLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVI 129
           LLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVI
Sbjct: 95  LLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVI 154

Query: 130 MGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
           MGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS
Sbjct: 155 MGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 187

[Close]
BLAST of Cucsa.227000 vs. NCBI nr
Match: gi|449462093|ref|XP_004148776.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.2e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML
Sbjct: 1249 TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 1308

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM
Sbjct: 1309 LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 1368

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
            GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS
Sbjct: 1369 GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 1400

[Close]
BLAST of Cucsa.227000 vs. NCBI nr
Match: gi|659130677|ref|XP_008465290.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 6.4e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML
Sbjct: 1249 TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 1308

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM
Sbjct: 1309 LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 1368

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
            GIPMPLGTGMLKVRQRVSVP+QLPYGPPAILS
Sbjct: 1369 GIPMPLGTGMLKVRQRVSVPRQLPYGPPAILS 1400

[Close]
BLAST of Cucsa.227000 vs. NCBI nr
Match: gi|703086391|ref|XP_010092991.1| (DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis])

HSP 1 Score: 256.5 bits (654), Expect = 3.1e-65
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            TGL  VMGTEGVDG NTK+NHIIEVQQ LGIEAAR CII+EI+YTM+SHGMSID RHMML
Sbjct: 1027 TGLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMML 1086

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            L D+MT RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR+DKIEGVSEC+IM
Sbjct: 1087 LADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIM 1146

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS 163
            GIPM +GTGM+KVRQRV VP  L YGP  ILS
Sbjct: 1147 GIPMQIGTGMIKVRQRVDVPPMLSYGPKPILS 1178

[Close]
BLAST of Cucsa.227000 vs. NCBI nr
Match: gi|641854232|gb|KDO73040.1| (hypothetical protein CISIN_1g000828mg [Citrus sinensis])

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-64
Identity = 125/148 (84.46%), Postives = 134/148 (90.54%), Query Frame = 1 

Query: 11   TGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMML 70
            TGLQAVMG EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMML
Sbjct: 1113 TGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMML 1172

Query: 71   LGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIM 130
            L DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IM
Sbjct: 1173 LADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIM 1232

Query: 131  GIPMPLGTGMLKVRQRVSVPQQLPYGPP 159
            GIPMPLGTG+LK+RQR +VP  L YG P
Sbjct: 1233 GIPMPLGTGILKIRQRDAVPPMLKYGAP 1260

The following BLAST results are available for this feature:
BLAST of Cucsa.227000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NRPC1_ARATH8.1e-5066.45DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 ... [more]
RPC1_CHICK5.1e-4462.07DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=... [more]
RPC1_BOVIN6.7e-4462.07DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A PE=2 SV=1[more]
RPC1_HUMAN8.7e-4462.07DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2[more]
RPC1_DICDI2.5e-4364.18DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr... [more]
BLAST of Cucsa.227000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXJ4_CUCSA4.0e-80100.00DNA-directed RNA polymerase OS=Cucumis sativus GN=Csa_1G083760 PE=4 SV=1[more]
W9QSP3_9ROSA2.1e-6584.21DNA-directed RNA polymerase subunit OS=Morus notabilis GN=L484_007172 PE=3 SV=1[more]
V4SLI9_9ROSI8.1e-6584.46DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE... [more]
A0A067GCD6_CITSI8.1e-6584.46DNA-directed RNA polymerase subunit OS=Citrus sinensis GN=CISIN_1g000828mg PE=3 ... [more]
F6GTW0_VITVI7.6e-6383.55Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03730 PE=4 SV=... [more]
BLAST of Cucsa.227000 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60040.24.6e-5166.45 nuclear RNA polymerase C1[more]
AT4G35800.16.2e-2442.52 RNA polymerase II large subunit[more]
AT3G57660.14.0e-1534.71 nuclear RNA polymerase A1[more]
BLAST of Cucsa.227000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209630|gb|KGN64726.1|5.8e-80100.00DNA-directed RNA polymerase [Cucumis sativus][more]
gi|449462093|ref|XP_004148776.1|2.2e-79100.00PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus][more]
gi|659130677|ref|XP_008465290.1|6.4e-7999.34PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cu... [more]
gi|703086391|ref|XP_010092991.1|3.1e-6584.21DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis][more]
gi|641854232|gb|KDO73040.1|1.2e-6484.46hypothetical protein CISIN_1g000828mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.227000.1Cucsa.227000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 11..96
score: 2.9
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 11..157
score: 9.3
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 11..157
score: 9.3
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 10..146
score: 5.19

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.227000Csa1G083760Cucumber (Chinese Long) v2cgycuB323
Cucsa.227000MELO3C026853Melon (DHL92) v3.5.1cgymeB385
Cucsa.227000CSPI01G12600Wild cucumber (PI 183967)cgycpiB337
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None