Cucsa.220330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.220330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	scaffold01658 : 1799834 .. 1800669 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTATTTGCCAAACAGCTAAAGGTAATTCTCAAAATACAGGTTTGTGCACTCCTTTACCTATTCCTTCTACTATTTGGGAGGACTTAGCTATGGATTTTGTTTTAGGCTTACCTAGAGCTCAAAGGGGTCATGATTCTGTCTTTGTAGTAGTAGATCGCTTAAGTAAAATGGTCCATTTCGTCCCTTGTAAAAAAACTTTTAATGCTTTGAATATATAGCTAACGTTTTTTCGAGAAATTGTTAGATTACATGGAATCCCTAAAACTATAATGTCAAATCGAGATGTAAAGTTCTTGAGTCATTTTTGGAGATCCCTATGGAAGAAATTCAACACCGACCTTCTCTTTAGTACCGCCAGCACTCACAAACTGACGGCCAAACAGAGGTGACCAACTGAACTCTTGGCAACCTCATCCGGTGTCTTAGTGGGATAAGCCTAATCAGTGGGACTTAGCTTTACCTCAAGCAGAATTCGCCTTCAACCACATGGCAAATCGCTCAACAGGGAAGTCCCCAGTTGAGGTTGTATATACTAGTCTCCCTCGGTTCACTTTTGATTTAGCTAATCTACCTTCTATTATTGATGTCAGTATGGAGGCTGAACGTATTTCCAAGCTACACCAAGAAGTCAAGAGTCATCTAGAGCTTGCTAATGACTCCTACAAAACAGCCGCCAACTCTCACAAACGCTTTAAGGAATATCAAGTAGGTGACCTAGTTATGGTTTACCTTCGAAAGTCAAGACTACCTGCTGGTCATCATTCCAAAATGACCAACAAGCGCATGGGTCCATTTCAAATATTGGAAAGACTCAGCCCCAATGCCGAGTAG

mRNA sequence

atgctctatttgccaaacagctaaaggtaattctcaaaatacaggtttgtgcactcctttacctattccttctactatttgggaggacttagctatggattttgttttaggcttacctagagctcaaaggggtcatgattctgtctttgtagtagtagatcgcttaagtaaaatgtgggataagcctaatcagtgggacttagctttacctcaagcagaattcgccttcaaccacatggcaaatcgctcaacagggaagtccccagttgaggttgtatatactagtctccctcggttcacttttgatttagctaatctaccttctattattgatgtcagtatggaggctgaacgtatttccaagctacaccaagaagtcaagagtcatctagagcttgctaatgactcctacaaaacagccgcCAACTCTCACAAACGCTTTAAGGAATATCAAGTAGGTGACCTAGTTATGGTTTACCTTCGAAAGTCAAGACTACCTGCTGGTCATCATTCCAAAATGACCAACAAGCGCATGGGTCCATTTCAAATATTGGAAAGACTCAGCCCCAATGCCGAGTAG

Coding sequence (CDS)

ATGCTCTATTTGCCAAACAGCTAAAGGTAATTCTCAAAATACAGGTTTGTGCACTCCTTTACCTATTCCTTCTACTATTTGGGAGGACTTAGCTATGGATTTTGTTTTAGGCTTACCTAGAGCTCAAAGGGGTCATGATTCTGTCTTTGTAGTAGTAGATCGCTTAAGTAAAATGTGGGATAAGCCTAATCAGTGGGACTTAGCTTTACCTCAAGCAGAATTCGCCTTCAACCACATGGCAAATCGCTCAACAGGGAAGTCCCCAGTTGAGGTTGTATATACTAGTCTCCCTCGGTTCACTTTTGATTTAGCTAATCTACCTTCTATTATTGATGTCAGTATGGAGGCTGAACGTATTTCCAAGCTACACCAAGAAGTCAAGAGTCATCTAGAGCTTGCTAATGACTCCTACAAAACAGCCGCCAACTCTCACAAACGCTTTAAGGAATATCAAGTAGGTGACCTAGTTATGGTTTACCTTCGAAAGTCAAGACTACCTGCTGGTCATCATTCCAAAATGACCAACAAGCGCATGGGTCCATTTCAAATATTGGAAAGACTCAGCCCCAATGCCGAGTAG

Protein sequence

CSICQTAKGNSQNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDRLSKMWDKPNQWDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFDLANLPSIIDVSMEAERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGHHSKMTNKRMGPFQILERLSPNAE*

Homology

[Close]

BLAST of Cucsa.220330 vs. TrEMBL
Match: M5XE48_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015308mg PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-49
Identity = 105/212 (49.53%), Postives = 133/212 (62.74%), Query Frame = 1


Query: 1    CSICQTAKGNSQNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDRLSKM-- 60
            C  CQT+KG  QNTGL  PLP+P+ IW+DLAMDFVLGLPR QRG DSVFVVVDR SKM  
Sbjct: 912  CYSCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGVDSVFVVVDRFSKMAT 971

Query: 61   ----W-----------DKPNQWDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFDL 120
                W           +KP QWD ALP  EFA+N   + +TGKSP  +VYT++P    DL
Sbjct: 972  EVTNWTLGNMVRSVCGEKPKQWDYALPHVEFAYNSAVHSATGKSPFSIVYTAIPNHIVDL 1031

Query: 121  ANLPSIIDVSME----AERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVY 180
               P     S+     AE +  +  EVK  LE  N  YK AA+ H+R K +Q GD VM++
Sbjct: 1032 VKFPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIF 1091

Query: 181  LRKSRLPAGHHSKMTNKRMGPFQILERLSPNA 192
            LRK R P G +SK+  K+ GP+++L+R++ NA
Sbjct: 1092 LRKERFPVGTYSKLKPKKYGPYKVLKRINDNA 1123

[Close]

BLAST of Cucsa.220330 vs. TrEMBL
Match: M5W3A4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021001mg PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.2e-32
Identity = 76/180 (42.22%), Postives = 109/180 (60.56%), Query Frame = 1


Query: 12  QNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDRLSKMWDKPNQWDLALPQ 71
           QNTG   PLP+P+ IW+DL MDFVLGLP  QRG +SVFVVVD+ SKM        +A  +
Sbjct: 342 QNTGFYMPLPMPNDIWQDLFMDFVLGLPSTQRGVNSVFVVVDKFSKM-----ACFIAARR 401

Query: 72  AEFAFNHMANRSTGKSPVEVVYTSLPRFTFDLANLPSIIDVSMEAERISKLHQEVKSHLE 131
            EFA+N+  + + GKSP  +VY+ +P    DL  LP         +    +  EVK  LE
Sbjct: 402 LEFAYNNAVHSAAGKSPFALVYSFVPNHVIDLVKLP---------KNHGAVKNEVKERLE 461

Query: 132 LANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGHHSKMTNKRMGPFQILERLSPNA 191
             N  +K AA+ H++ K +  G+ VMVY++K R   G H K+  ++ GP++IL++++ NA
Sbjct: 462 KTNAKHKAAADKHRQVKVFNEGNSVMVYMKKERFSMGAHRKLQPRKYGPYKILKKINDNA 507

[Close]

BLAST of Cucsa.220330 vs. TrEMBL
Match: A5C120_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032368 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 81/201 (40.30%), Postives = 111/201 (55.22%), Query Frame = 1


Query: 1   CSICQTAKGNSQNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDR-LSKMW 60
           C   + AK      GL TPLP+PS +W  ++MDFVLGLPR++ G DS+FVVVDR LS + 
Sbjct: 496 CITYRQAKSRVLPHGLYTPLPVPSALWVYISMDFVLGLPRSRNGRDSIFVVVDRTLSTLL 555

Query: 61  DKPNQ-----WDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFD----LANLPSII 120
               Q     W+  LP  EFA+N   + +T  SP E+VY   P    D    L N  + +
Sbjct: 556 XTIIQKNLKNWEDCLPFIEFAYNRSIHSTTNFSPFEIVYGFNPLTPLDLLPLLVNEMTSL 615

Query: 121 DVSMEAERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGHH 180
           D   +AE + KLH+ V+ H+E  N+ Y T AN  +R           V++RK R P    
Sbjct: 616 DGEKKAEMVKKLHESVRKHIEKKNEQYATKANKGRR----------QVHMRKERFPTRRR 675

Query: 181 SKMTNKRMGPFQILERLSPNA 192
           SK+  +  GPFQ+LER++ NA
Sbjct: 676 SKLHPRGDGPFQVLERINDNA 686

[Close]

BLAST of Cucsa.220330 vs. TrEMBL
Match: A5BWU8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010430 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-28
Identity = 69/141 (48.94%), Postives = 93/141 (65.96%), Query Frame = 1


Query: 55  LSKMWDKPNQWDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFDLANLPSIIDVSM 114
           LS   DK  QWD ALPQ EFAFN M N ST K+P EVVYTS+PR T DL  LP   DV+ 
Sbjct: 193 LSXSGDKLKQWDAALPQIEFAFNSMPNHSTKKTPFEVVYTSVPRHTMDLIRLPLSHDVNP 252

Query: 115 E----AERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGHH 174
                AE I +++QEVK +LE  N  YKTA++ H+  K +  GDLVMV+  K+  P G +
Sbjct: 253 NTEEFAEPIQQIYQEVKKNLEKVNLCYKTASDRHRCLKLFNEGDLVMVHFCKNCFPIGTY 312

Query: 175 SKMTNKRMGPFQILERLSPNA 192
           +K+ +K++GPF++L+++   A
Sbjct: 313 NKLKDKKIGPFRVLKKIGDKA 333

[Close]

BLAST of Cucsa.220330 vs. TrEMBL
Match: M5XJ91_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 63/136 (46.32%), Postives = 89/136 (65.44%), Query Frame = 1


Query: 60   DKPNQWDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFDLANLPSIIDVSMEAERI 119
            +KP QWD ALPQAEFA+N   + +TGKSP  +VYT+ P    DL  LP     S+ A+ +
Sbjct: 1189 EKPKQWDYALPQAEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNL 1248

Query: 120  SK----LHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGHHSKMTN 179
            ++    +  EVK  LE  N  YK AA+ H+R K +Q GD VM++LRK R PAG +SK+  
Sbjct: 1249 AEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKERFPAGTYSKLKP 1308

Query: 180  KRMGPFQILERLSPNA 192
            K+ GP+++L+R++ NA
Sbjct: 1309 KKYGPYKVLKRINDNA 1324

[Close]

BLAST of Cucsa.220330 vs. NCBI nr
Match: gi|595946584|ref|XP_007216161.1| (hypothetical protein PRUPE_ppa015308mg, partial [Prunus persica])

HSP 1 Score: 204.1 bits (518), Expect = 2.1e-49
Identity = 105/212 (49.53%), Postives = 133/212 (62.74%), Query Frame = 1


Query: 1    CSICQTAKGNSQNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDRLSKM-- 60
            C  CQT+KG  QNTGL  PLP+P+ IW+DLAMDFVLGLPR QRG DSVFVVVDR SKM  
Sbjct: 912  CYSCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGVDSVFVVVDRFSKMAT 971

Query: 61   ----W-----------DKPNQWDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFDL 120
                W           +KP QWD ALP  EFA+N   + +TGKSP  +VYT++P    DL
Sbjct: 972  EVTNWTLGNMVRSVCGEKPKQWDYALPHVEFAYNSAVHSATGKSPFSIVYTAIPNHIVDL 1031

Query: 121  ANLPSIIDVSME----AERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVY 180
               P     S+     AE +  +  EVK  LE  N  YK AA+ H+R K +Q GD VM++
Sbjct: 1032 VKFPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIF 1091

Query: 181  LRKSRLPAGHHSKMTNKRMGPFQILERLSPNA 192
            LRK R P G +SK+  K+ GP+++L+R++ NA
Sbjct: 1092 LRKERFPVGTYSKLKPKKYGPYKVLKRINDNA 1123

[Close]

BLAST of Cucsa.220330 vs. NCBI nr
Match: gi|923822887|ref|XP_013694892.1| (PREDICTED: uncharacterized protein LOC106398939 [Brassica napus])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-38
Identity = 92/202 (45.54%), Postives = 122/202 (60.40%), Query Frame = 1


Query: 1    CSICQTAKGNSQNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDRLSKM-- 60
            C ICQ +KG++ N GL  PLPIPS  W D++MDFVLGLPR QRG DS+FVVVDR SKM  
Sbjct: 1108 CGICQASKGHASNAGLYLPLPIPSQPWTDISMDFVLGLPRTQRGFDSIFVVVDRFSKMVH 1167

Query: 61   -----WDKPNQWDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFDLANLPSIIDVS 120
                        D  L QAEFA NH  NRST  SP  V+Y  +PR   DL   P      
Sbjct: 1168 FVPCKKTTDAVQDSVLCQAEFAHNHAVNRSTRFSPFYVIYGVVPRSPIDLNIAPDRTRSH 1227

Query: 121  MEA----ERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGH 180
              A    E  + +HQ+VK++LE A   YKT+ +S +R  ++QVGD V   L K R P   
Sbjct: 1228 GRACDMIEDFTSIHQQVKANLEAATLKYKTSVDSRRRDLQFQVGDKVWAVLTKERFPPNS 1287

Query: 181  HSKMTNKRMGPFQILERLSPNA 192
            ++K+ ++++GP ++LE+++ NA
Sbjct: 1288 YNKLKSRKVGPLEVLEKINNNA 1309

[Close]

BLAST of Cucsa.220330 vs. NCBI nr
Match: gi|595833257|ref|XP_007206637.1| (hypothetical protein PRUPE_ppa021001mg [Prunus persica])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 76/180 (42.22%), Postives = 109/180 (60.56%), Query Frame = 1


Query: 12  QNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDRLSKMWDKPNQWDLALPQ 71
           QNTG   PLP+P+ IW+DL MDFVLGLP  QRG +SVFVVVD+ SKM        +A  +
Sbjct: 342 QNTGFYMPLPMPNDIWQDLFMDFVLGLPSTQRGVNSVFVVVDKFSKM-----ACFIAARR 401

Query: 72  AEFAFNHMANRSTGKSPVEVVYTSLPRFTFDLANLPSIIDVSMEAERISKLHQEVKSHLE 131
            EFA+N+  + + GKSP  +VY+ +P    DL  LP         +    +  EVK  LE
Sbjct: 402 LEFAYNNAVHSAAGKSPFALVYSFVPNHVIDLVKLP---------KNHGAVKNEVKERLE 461

Query: 132 LANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGHHSKMTNKRMGPFQILERLSPNA 191
             N  +K AA+ H++ K +  G+ VMVY++K R   G H K+  ++ GP++IL++++ NA
Sbjct: 462 KTNAKHKAAADKHRQVKVFNEGNSVMVYMKKERFSMGAHRKLQPRKYGPYKILKKINDNA 507

[Close]

BLAST of Cucsa.220330 vs. NCBI nr
Match: gi|923519544|ref|XP_013662803.1| (PREDICTED: uncharacterized protein LOC106367560 [Brassica napus])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 81/207 (39.13%), Postives = 117/207 (56.52%), Query Frame = 1


Query: 1    CSICQTAKGNSQNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFV--VVDR---- 60
            C+ C+ AK   Q  GL TPLPIP+  W D+++DFV+GLPR + G DS+FV  VV+R    
Sbjct: 1167 CTTCKLAKSKVQPHGLYTPLPIPTHPWNDISLDFVMGLPRTRTGKDSIFVTEVVNRTLGT 1226

Query: 61   LSKMWDKPN--QWDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFDLANLPSIIDV 120
            L + + K N   W+  LP  EFA+NH  + ++  SP E+VY   P    DL  LP    V
Sbjct: 1227 LLRAFIKKNLKSWEDYLPHCEFAYNHAMHSASKFSPFEIVYGFNPISPLDLIPLPECERV 1286

Query: 121  SME--------AERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVYLRKSR 180
            S++        AE + ++H++ K +LE     Y   AN  +R    +VGD V V+LRK R
Sbjct: 1287 SLDGKKKAEKKAEIVQQIHEQAKRNLEEKTKQYAKQANKGRREMILEVGDQVCVHLRKER 1346

Query: 181  LPAGHHSKMTNKRMGPFQILERLSPNA 192
             P    SK+  +  GPF++ +R++ NA
Sbjct: 1347 FPKERKSKLMPRIDGPFEVTKRINDNA 1373

[Close]

BLAST of Cucsa.220330 vs. NCBI nr
Match: gi|147833257|emb|CAN75188.1| (hypothetical protein VITISV_032368 [Vitis vinifera])

HSP 1 Score: 137.1 bits (344), Expect = 3.2e-29
Identity = 81/201 (40.30%), Postives = 111/201 (55.22%), Query Frame = 1


Query: 1   CSICQTAKGNSQNTGLCTPLPIPSTIWEDLAMDFVLGLPRAQRGHDSVFVVVDR-LSKMW 60
           C   + AK      GL TPLP+PS +W  ++MDFVLGLPR++ G DS+FVVVDR LS + 
Sbjct: 496 CITYRQAKSRVLPHGLYTPLPVPSALWVYISMDFVLGLPRSRNGRDSIFVVVDRTLSTLL 555

Query: 61  DKPNQ-----WDLALPQAEFAFNHMANRSTGKSPVEVVYTSLPRFTFD----LANLPSII 120
               Q     W+  LP  EFA+N   + +T  SP E+VY   P    D    L N  + +
Sbjct: 556 XTIIQKNLKNWEDCLPFIEFAYNRSIHSTTNFSPFEIVYGFNPLTPLDLLPLLVNEMTSL 615

Query: 121 DVSMEAERISKLHQEVKSHLELANDSYKTAANSHKRFKEYQVGDLVMVYLRKSRLPAGHH 180
           D   +AE + KLH+ V+ H+E  N+ Y T AN  +R           V++RK R P    
Sbjct: 616 DGEKKAEMVKKLHESVRKHIEKKNEQYATKANKGRR----------QVHMRKERFPTRRR 675

Query: 181 SKMTNKRMGPFQILERLSPNA 192
           SK+  +  GPFQ+LER++ NA
Sbjct: 676 SKLHPRGDGPFQVLERINDNA 686

The following BLAST results are available for this feature:

BLAST of Cucsa.220330 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XE48_PRUPE	1.5e-49	49.53	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015308mg PE=4 S...	[more]
M5W3A4_PRUPE	8.2e-32	42.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021001mg PE=4 SV=1	[more]
A5C120_VITVI	2.2e-29	40.30	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032368 PE=4 SV=1	[more]
A5BWU8_VITVI	9.4e-28	48.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010430 PE=4 SV=1	[more]
M5XJ91_PRUPE	1.6e-27	46.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1	[more]

BLAST of Cucsa.220330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595946584\|ref\|XP_007216161.1\|	2.1e-49	49.53	hypothetical protein PRUPE_ppa015308mg, partial [Prunus persica]	[more]
gi\|923822887\|ref\|XP_013694892.1\|	1.0e-38	45.54	PREDICTED: uncharacterized protein LOC106398939 [Brassica napus]	[more]
gi\|595833257\|ref\|XP_007206637.1\|	1.2e-31	42.22	hypothetical protein PRUPE_ppa021001mg [Prunus persica]	[more]
gi\|923519544\|ref\|XP_013662803.1\|	1.4e-29	39.13	PREDICTED: uncharacterized protein LOC106367560 [Brassica napus]	[more]
gi\|147833257\|emb\|CAN75188.1\|	3.2e-29	40.30	hypothetical protein VITISV_032368 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.220330.1	Cucsa.220330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 19..94 score: 1.0
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..188 score: 5.2
None	No IPR available	PANTHER	PTHR24559:SF174	SUBFAMILY NOT NAMED	coord: 1..188 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.220330	Cucurbita maxima (Rimu)	cgycmaB0624
Cucsa.220330	Cucurbita moschata (Rifu)	cgycmoB0624
Cucsa.220330	Cucurbita moschata (Rifu)	cgycmoB0627
Cucsa.220330	Wild cucumber (PI 183967)	cgycpiB336
Cucsa.220330	Cucumber (Chinese Long) v2	cgycuB319
Cucsa.220330	Cucumber (Chinese Long) v2	cgycuB322
Cucsa.220330	Melon (DHL92) v3.5.1	cgymeB379
Cucsa.220330	Watermelon (Charleston Gray)	cgywcgB396
Cucsa.220330	Watermelon (97103) v1	cgywmB418
Cucsa.220330	Watermelon (97103) v1	cgywmB427
Cucsa.220330	Cucurbita pepo (Zucchini)	cgycpeB0594
Cucsa.220330	Bottle gourd (USVL1VR-Ls)	cgylsiB360
Cucsa.220330	Bottle gourd (USVL1VR-Ls)	cgylsiB361
Cucsa.220330	Melon (DHL92) v3.6.1	cgymedB377
Cucsa.220330	Silver-seed gourd	carcgyB0251
Cucsa.220330	Cucumber (Chinese Long) v3	cgycucB337
Cucsa.220330	Cucumber (Chinese Long) v3	cgycucB342
Cucsa.220330	Watermelon (97103) v2	cgywmbB395
Cucsa.220330	Watermelon (97103) v2	cgywmbB400
Cucsa.220330	Wax gourd	cgywgoB446