Cucsa.218670 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.218670
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionE3 ubiquitin-protein ligase RING1
Locationscaffold01658 : 683417 .. 684207 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCATATTCATCTCAACCTCAATGGCCGAACAAAACTTTGATGATTGTACGTCTGGTTACTACATGGGTATGTCACTAAGAATTACCGATCCCATTCAAACTCGATCAAACTCGCCAACATCTGTCAAACAAATCGACCTGAATTTCAAAGTTGAAGTCAAATGCCAACACTTTCAAGCAGGTGAAGAAGACACCACATTTGCAACAACTTTTCTTAGTGAACACATAATTGCACACCAGCCCTTTCCAGCTTTGCAACTTCCTGTCTCCATCTTCAAACATGGTGACAAAACTTTGAAGCGATTACTTTTTCAGAAGTTTCAGATGTTTAGAGCCATCATCAACATTGAACTTGTGACTGACCAAATAATAAAACATTGGGTTAAAAAAGTAGAAGATGATAAAGAGAATAATTCTGGGGTGTTTGAAGAGATTTATCCTCTTGAAATTACGATAGAGGTGTTGGTTCTTCAAATGATTGATGCAGTAGACCAACCACAAGAAACGATAGATCAACCACAAGTAAGGATGGTTCCAACAAGCGACAGTGCTATGAAGAGTATGCTGAAGAGAGTGGAAAACGAAGAAATAATGAAAGTAGGTGACTACAAAAGCATTAGTTGTGTTATTTGCTTGGAGAAAATTAGTAAAGAGGAGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGTTTGCATATGTTTCATGAAGAATGTATAAGGAAGTGGTTGAAGACAAGTCATTACTGTCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA

mRNA sequence

TCTTCATATTCATCTCAACCTCAATGGCCGAACAAAACTTTGATGATTGTACGTCTGGTTACTACATGGTAGACCAACCACAAGAAACGATAGATCAACCACAAGTAAGGATGGTTCCAACAAGCGACAGTGCTATGAAGAGTATGCTGAAGAGAGTGGAAAACGAAGAAATAATGAAAGTAGGTGACTACAAAAGCATTAGTTGTGTTATTTGCTTGGAGAAAATTAGTAAAGAGGAGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGTTTGCATATGTTTCATGAAGAATGTATAAGGAAGTGGTTGAAGACAAGTCATTACTGTCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA

Coding sequence (CDS)

TCTTCATATTCATCTCAACCTCAATGGCCGAACAAAACTTTGATGATTGTACGTCTGGTTACTACATGGTAGACCAACCACAAGAAACGATAGATCAACCACAAGTAAGGATGGTTCCAACAAGCGACAGTGCTATGAAGAGTATGCTGAAGAGAGTGGAAAACGAAGAAATAATGAAAGTAGGTGACTACAAAAGCATTAGTTGTGTTATTTGCTTGGAGAAAATTAGTAAAGAGGAGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGTTTGCATATGTTTCATGAAGAATGTATAAGGAAGTGGTTGAAGACAAGTCATTACTGTCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA

Protein sequence

FIFISTSMAEQNFDDCTSGYYMVDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINNN*
Homology
[Close]
BLAST of Cucsa.218670 vs. Swiss-Prot
Match: SDIR1_ARATH (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 35/111 (31.53%), Postives = 53/111 (47.75%), Query Frame = 1 

Query: 5   STSMAEQNFDDCTSGYYMVDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYK 64
           +TSM+E+  +      Y V  P+        +   TS SA K +    E+    K G   
Sbjct: 154 TTSMSEEEINALPVHKYKVLDPENGCSL--AKQASTSSSAEKMLDSANES----KKGTED 213

Query: 65  SISCVICLEKISKEEKGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRF 116
            ++C +CLE+++  E     +V  +PCLH FH  CI  WL+    CP C+F
Sbjct: 214 ELTCSVCLEQVTVGE-----IVRTLPCLHQFHAGCIDPWLRQQGTCPVCKF 253

[Close]
BLAST of Cucsa.218670 vs. Swiss-Prot
Match: HRD1_CAEBR (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 24/72 (33.33%), Postives = 38/72 (52.78%), Query Frame = 1 

Query: 43  SAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFHEECIRK 102
           +AM S    V N+E+  +      +C+IC E+++ E         ++PC H+FH  C+R 
Sbjct: 271 NAMNSQFPVVSNDELSAM----DATCIICREEMTVESSPK-----RLPCSHVFHAHCLRS 330

Query: 103 WLKTSHYCPTCR 115
           W +    CPTCR
Sbjct: 331 WFQRQQTCPTCR 333

[Close]
BLAST of Cucsa.218670 vs. Swiss-Prot
Match: SIS3_ARATH (E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 5.4e-06
Identity = 28/87 (32.18%), Postives = 46/87 (52.87%), Query Frame = 1 

Query: 33  PQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEK--ISKEEKGSEGVVLQMP 92
           P + + P    A++++++ +    +  V D     C+ICLE+  I  E +G       +P
Sbjct: 201 PGLYLTPAQTEAVEALIQELPKFRLKAVPDDCG-ECLICLEEFHIGHEVRG-------LP 260

Query: 93  CLHMFHEECIRKWLKTSHYCPTCRFSM 118
           C H FH ECI +WL+ +  CP CR S+
Sbjct: 261 CAHNFHVECIDQWLRLNVKCPRCRCSV 279

[Close]
BLAST of Cucsa.218670 vs. TrEMBL
Match: A0A0A0K2A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067550 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.9e-51
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 23  VDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGS 82
           VDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGS
Sbjct: 156 VDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGS 215

Query: 83  EGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINNN 123
           EGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSM INNN
Sbjct: 216 EGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMTINNN 255

[Close]
BLAST of Cucsa.218670 vs. TrEMBL
Match: A0A0A0K2A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067550 PE=4 SV=1)

HSP 1 Score: 37.7 bits (86), Expect = 1.2e+01
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 1 

Query: 8  MAEQNFDDCTSGYYM 23
          MAEQNFDDCTSGYYM
Sbjct: 1  MAEQNFDDCTSGYYM 15


HSP 2 Score: 184.9 bits (468), Expect = 6.0e-44
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 1 

Query: 21  YMVDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEK 80
           + +DQP+ETIDQPQV MVP S+SAM+SMLKRVE EEI+KVG+ KSI+CVICLE+ISK+ K
Sbjct: 164 HAIDQPEETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMK 223

Query: 81  GSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINNN 123
           GSEGVVLQMPCLHMFHEECIR WLKTSHYCPTCRFSMPINNN
Sbjct: 224 GSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMPINNN 265

[Close]
BLAST of Cucsa.218670 vs. TrEMBL
Match: A0A0A0K7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067560 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.7e-41
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 1 

Query: 21  YMVDQPQETI-DQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEE 80
           + +DQP E + DQPQV MVPTS+SAM+SMLK+VENEEI+K GD KSI+CVICLE+ISKE+
Sbjct: 166 HAIDQPHEIMMDQPQVMMVPTSESAMESMLKKVENEEIVKFGDNKSINCVICLEEISKEK 225

Query: 81  KGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINN 122
           KGSE VVLQMPCLHMFHEECIRKWLK SHYCPTCRFSMP NN
Sbjct: 226 KGSEAVVLQMPCLHMFHEECIRKWLKRSHYCPTCRFSMPTNN 267

[Close]
BLAST of Cucsa.218670 vs. TrEMBL
Match: E5GCQ3_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 1 

Query: 30  IDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQM 89
           IDQP   MVPTSDSA++SMLKRVENEEIMK GD +SI+CV+CLE+ISKEEKGSE  VLQM
Sbjct: 176 IDQPL--MVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQM 235

Query: 90  PCLHMFHEECIRKWLKTSHYCPTCRFSMPINN 122
           PCLHMFHEECIRKWLKTSHYCPTCRFSMPI+N
Sbjct: 236 PCLHMFHEECIRKWLKTSHYCPTCRFSMPIDN 265

[Close]
BLAST of Cucsa.218670 vs. TrEMBL
Match: A0A0A0K2A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068580 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 1 

Query: 32  QPQV-RMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMP 91
           QPQV  MVPTSDSAM+SMLKRVENEEIMK+GD   I CVICLE+I KEEKGSEGVVLQMP
Sbjct: 174 QPQVLMMVPTSDSAMESMLKRVENEEIMKLGDDDCIHCVICLEEIGKEEKGSEGVVLQMP 233

Query: 92  CLHMFHEECIRKWLKTSHYCPTCRFSMPIN 121
           CLH+FH ECI KWL TSHYCPTCRF MPIN
Sbjct: 234 CLHVFHGECINKWLNTSHYCPTCRFPMPIN 263

[Close]
BLAST of Cucsa.218670 vs. TAIR10
Match: AT1G18770.1 (AT1G18770.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 1 

Query: 39  PTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFHEE 98
           P S   +KS+ +++        G+     C+ICLE+ S+  +     V+ +PC H F +E
Sbjct: 34  PASKLVVKSLARKIYKMTTSSTGEM----CIICLEEFSEGRR-----VVTLPCGHDFDDE 93

Query: 99  CIRKWLKTSHYCPTCRFSMP 119
           C+ KW +T+H CP CRF +P
Sbjct: 94  CVLKWFETNHSCPLCRFKLP 104

[Close]
BLAST of Cucsa.218670 vs. TAIR10
Match: AT1G14200.1 (AT1G14200.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1 

Query: 39  PTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFHEE 98
           P   S +++M + V  E+  K G     SC ICL++ SK +     V  +MPC H FH +
Sbjct: 84  PALKSEVENMPRVVIGEDKEKYGG----SCAICLDEWSKGD-----VAAEMPCKHKFHSK 143

Query: 99  CIRKWLKTSHYCPTCRFSMPI 120
           C+ +WL     CP CR+ MP+
Sbjct: 144 CVEEWLGRHATCPMCRYEMPV 155

[Close]
BLAST of Cucsa.218670 vs. TAIR10
Match: AT3G55530.1 (AT3G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 35/111 (31.53%), Postives = 53/111 (47.75%), Query Frame = 1 

Query: 5   STSMAEQNFDDCTSGYYMVDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYK 64
           +TSM+E+  +      Y V  P+        +   TS SA K +    E+    K G   
Sbjct: 154 TTSMSEEEINALPVHKYKVLDPENGCSL--AKQASTSSSAEKMLDSANES----KKGTED 213

Query: 65  SISCVICLEKISKEEKGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRF 116
            ++C +CLE+++  E     +V  +PCLH FH  CI  WL+    CP C+F
Sbjct: 214 ELTCSVCLEQVTVGE-----IVRTLPCLHQFHAGCIDPWLRQQGTCPVCKF 253

[Close]
BLAST of Cucsa.218670 vs. TAIR10
Match: AT1G26800.1 (AT1G26800.1 RING/U-box superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 1 

Query: 68  CVICLEKISKEEKGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINNN 123
           CVICLE+   EE      V +MPC H FH  CI KWL     CP CR+ MP++ +
Sbjct: 113 CVICLEEWKSEE-----TVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPVDGD 162

[Close]
BLAST of Cucsa.218670 vs. TAIR10
Match: AT1G74620.1 (AT1G74620.1 RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 1 

Query: 58  MKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSM 117
           + V   +   C IC+E   +       +V ++PC H FH +CI KWL+ +H CP CR S+
Sbjct: 173 LNVATTEENGCAICMEDYIE----GSSIVAKLPCDHEFHGDCINKWLQLNHMCPLCRSSI 229

Query: 118 P 119
           P
Sbjct: 233 P 229

[Close]
BLAST of Cucsa.218670 vs. NCBI nr
Match: gi|700188567|gb|KGN43800.1| (hypothetical protein Csa_7G067550 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 5.5e-51
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 23  VDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGS 82
           VDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGS
Sbjct: 156 VDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGS 215

Query: 83  EGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINNN 123
           EGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSM INNN
Sbjct: 216 EGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMTINNN 255

[Close]
BLAST of Cucsa.218670 vs. NCBI nr
Match: gi|700188567|gb|KGN43800.1| (hypothetical protein Csa_7G067550 [Cucumis sativus])

HSP 1 Score: 37.7 bits (86), Expect = 1.7e+01
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 1 

Query: 8  MAEQNFDDCTSGYYM 23
          MAEQNFDDCTSGYYM
Sbjct: 1  MAEQNFDDCTSGYYM 15


HSP 2 Score: 184.9 bits (468), Expect = 8.6e-44
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 1 

Query: 21  YMVDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEK 80
           + +DQP+ETIDQPQV MVP S+SAM+SMLKRVE EEI+KVG+ KSI+CVICLE+ISK+ K
Sbjct: 164 HAIDQPEETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMK 223

Query: 81  GSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINNN 123
           GSEGVVLQMPCLHMFHEECIR WLKTSHYCPTCRFSMPINNN
Sbjct: 224 GSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMPINNN 265

[Close]
BLAST of Cucsa.218670 vs. NCBI nr
Match: gi|700188568|gb|KGN43801.1| (hypothetical protein Csa_7G067560 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 6.8e-41
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 1 

Query: 21  YMVDQPQETI-DQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEE 80
           + +DQP E + DQPQV MVPTS+SAM+SMLK+VENEEI+K GD KSI+CVICLE+ISKE+
Sbjct: 166 HAIDQPHEIMMDQPQVMMVPTSESAMESMLKKVENEEIVKFGDNKSINCVICLEEISKEK 225

Query: 81  KGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPINN 122
           KGSE VVLQMPCLHMFHEECIRKWLK SHYCPTCRFSMP NN
Sbjct: 226 KGSEAVVLQMPCLHMFHEECIRKWLKRSHYCPTCRFSMPTNN 267

[Close]
BLAST of Cucsa.218670 vs. NCBI nr
Match: gi|659111003|ref|XP_008455525.1| (PREDICTED: uncharacterized protein LOC103495676 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-37
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 1 

Query: 30  IDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQM 89
           IDQP   MVPTSDSA++SMLKRVENEEIMK GD +SI+CV+CLE+ISKEEKGSE  VLQM
Sbjct: 176 IDQPL--MVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQM 235

Query: 90  PCLHMFHEECIRKWLKTSHYCPTCRFSMPINN 122
           PCLHMFHEECIRKWLKTSHYCPTCRFSMPI+N
Sbjct: 236 PCLHMFHEECIRKWLKTSHYCPTCRFSMPIDN 265

[Close]
BLAST of Cucsa.218670 vs. NCBI nr
Match: gi|700188572|gb|KGN43805.1| (hypothetical protein Csa_7G068580 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 1 

Query: 32  QPQV-RMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMP 91
           QPQV  MVPTSDSAM+SMLKRVENEEIMK+GD   I CVICLE+I KEEKGSEGVVLQMP
Sbjct: 174 QPQVLMMVPTSDSAMESMLKRVENEEIMKLGDDDCIHCVICLEEIGKEEKGSEGVVLQMP 233

Query: 92  CLHMFHEECIRKWLKTSHYCPTCRFSMPIN 121
           CLH+FH ECI KWL TSHYCPTCRF MPIN
Sbjct: 234 CLHVFHGECINKWLNTSHYCPTCRFPMPIN 263

The following BLAST results are available for this feature:
BLAST of Cucsa.218670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDIR1_ARATH3.4e-0831.53E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1[more]
HRD1_CAEBR1.4e-0633.33E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2[more]
SIS3_ARATH5.4e-0632.18E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2[more]
BLAST of Cucsa.218670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2A1_CUCSA3.9e-5199.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067550 PE=4 SV=1[more]
A0A0A0K2A1_CUCSA1.2e+01100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067550 PE=4 SV=1[more]
A0A0A0K7L0_CUCSA4.7e-4180.39Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067560 PE=4 SV=1[more]
E5GCQ3_CUCME1.4e-3784.78Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K2A5_CUCSA2.3e-3583.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068580 PE=4 SV=1[more]
BLAST of Cucsa.218670 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G18770.11.0e-1035.00 RING/U-box superfamily protein[more]
AT1G14200.11.1e-0937.04 RING/U-box superfamily protein[more]
AT3G55530.11.9e-0931.53 RING/U-box superfamily protein[more]
AT1G26800.12.5e-0947.27 RING/U-box superfamily protein[more]
AT1G74620.12.1e-0837.70 RING/U-box superfamily protein[more]
BLAST of Cucsa.218670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188567|gb|KGN43800.1|5.5e-5199.00hypothetical protein Csa_7G067550 [Cucumis sativus][more]
gi|700188567|gb|KGN43800.1|1.7e+01100.00hypothetical protein Csa_7G067550 [Cucumis sativus][more]
gi|700188568|gb|KGN43801.1|6.8e-4180.39hypothetical protein Csa_7G067560 [Cucumis sativus][more]
gi|659111003|ref|XP_008455525.1|2.0e-3784.78PREDICTED: uncharacterized protein LOC103495676 [Cucumis melo][more]
gi|700188572|gb|KGN43805.1|3.3e-3583.33hypothetical protein Csa_7G068580 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.218670.1Cucsa.218670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 67..114
score: 1.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 68..113
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 68..114
score: 1
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 67..114
score: 6.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 56..118
score: 6.6
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 36..122
score: 6.1
NoneNo IPR availablePANTHERPTHR22763:SF78E3 UBIQUITIN-PROTEIN LIGASE RHA2Acoord: 36..122
score: 6.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 53..119
score: 8.48

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.218670Melon (DHL92) v3.6.1cgymedB377
Cucsa.218670Melon (DHL92) v3.6.1cgymedB381
Cucsa.218670Silver-seed gourdcarcgyB0221
Cucsa.218670Silver-seed gourdcarcgyB0338
Cucsa.218670Silver-seed gourdcarcgyB0435
Cucsa.218670Silver-seed gourdcarcgyB0524
Cucsa.218670Silver-seed gourdcarcgyB0824
Cucsa.218670Silver-seed gourdcarcgyB0825
Cucsa.218670Cucumber (Chinese Long) v3cgycucB342
Cucsa.218670Watermelon (97103) v2cgywmbB393
Cucsa.218670Watermelon (97103) v2cgywmbB395
Cucsa.218670Watermelon (97103) v2cgywmbB399
Cucsa.218670Wax gourdcgywgoB443
Cucsa.218670Wax gourdcgywgoB445
Cucsa.218670Wax gourdcgywgoB450
Cucsa.218670Cucumber (Gy14) v1cgycgyB119
Cucsa.218670Cucurbita maxima (Rimu)cgycmaB0620
Cucsa.218670Cucurbita maxima (Rimu)cgycmaB0622
Cucsa.218670Cucurbita maxima (Rimu)cgycmaB0624
Cucsa.218670Cucurbita maxima (Rimu)cgycmaB0627
Cucsa.218670Cucurbita maxima (Rimu)cgycmaB0629
Cucsa.218670Cucurbita moschata (Rifu)cgycmoB0623
Cucsa.218670Cucurbita moschata (Rifu)cgycmoB0624
Cucsa.218670Cucurbita moschata (Rifu)cgycmoB0627
Cucsa.218670Cucurbita moschata (Rifu)cgycmoB0629
Cucsa.218670Cucurbita moschata (Rifu)cgycmoB0632
Cucsa.218670Wild cucumber (PI 183967)cgycpiB335
Cucsa.218670Wild cucumber (PI 183967)cgycpiB336
Cucsa.218670Cucumber (Chinese Long) v2cgycuB322
Cucsa.218670Melon (DHL92) v3.5.1cgymeB379
Cucsa.218670Melon (DHL92) v3.5.1cgymeB380
Cucsa.218670Melon (DHL92) v3.5.1cgymeB383
Cucsa.218670Watermelon (Charleston Gray)cgywcgB391
Cucsa.218670Watermelon (Charleston Gray)cgywcgB393
Cucsa.218670Watermelon (Charleston Gray)cgywcgB396
Cucsa.218670Watermelon (Charleston Gray)cgywcgB399
Cucsa.218670Watermelon (97103) v1cgywmB415
Cucsa.218670Watermelon (97103) v1cgywmB421
Cucsa.218670Watermelon (97103) v1cgywmB422
Cucsa.218670Cucurbita pepo (Zucchini)cgycpeB0594
Cucsa.218670Cucurbita pepo (Zucchini)cgycpeB0596
Cucsa.218670Cucurbita pepo (Zucchini)cgycpeB0599
Cucsa.218670Cucurbita pepo (Zucchini)cgycpeB0601
Cucsa.218670Cucurbita pepo (Zucchini)cgycpeB0602
Cucsa.218670Bottle gourd (USVL1VR-Ls)cgylsiB364
Cucsa.218670Bottle gourd (USVL1VR-Ls)cgylsiB366
Cucsa.218670Bottle gourd (USVL1VR-Ls)cgylsiB367