Cucsa.218510 (gene) Cucumber (Gy14) v1

NameCucsa.218510
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPhloem filament protein
Locationscaffold01658 : 596827 .. 597458 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGgTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAAATTAAAAGAAAAGTTATATGTATAATCGAAGTTCATACTTATGTGTGAGAAGTACACAATAATAAATCTTATATGATATTGTACTGCTCTACTTTCTTTAACTATCTGTTATAGAATAATAATGGAGGCCAAACGATGTTTTTAGTCCCAAACCC

mRNA sequence

ATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAAATTAAAAGAAAAGTTATATGTATAATCGAAGTTCATACTTATGTGTGAGAAGTACACAATAATAAATCTTATATGATATTGTACTGCTCTACTTTCTTTAACTATCTGTTATAGAATAATAATGGAGGCCAAACGATGTTTTTAGTCCCAAACCC

Coding sequence (CDS)

ATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGgTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAA

Protein sequence

MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD*
BLAST of Cucsa.218510 vs. TrEMBL
Match: A0A0A0K477_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 5.6e-87
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1

Query: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60
           MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS
Sbjct: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60

Query: 61  HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI 120
           HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI
Sbjct: 61  HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI 120

Query: 121 ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 159
           ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD
Sbjct: 121 ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 158

BLAST of Cucsa.218510 vs. TrEMBL
Match: E5GCR5_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.4e-50
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 1

Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 83
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 84  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 143
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 144 VPPGWNLFSFTQI 157
            PPGWNL SF QI
Sbjct: 121 TPPGWNLVSFNQI 132

BLAST of Cucsa.218510 vs. TrEMBL
Match: E5GCR6_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 1

Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 83
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N +A  V +  A
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDV-LEAA 60

Query: 84  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE-IV 143
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC +R L FHA+VIE  V
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120

Query: 144 GVPPGWNLFSFTQISD 159
                W L SF +I D
Sbjct: 121 DHKKIWILVSFERIFD 134

BLAST of Cucsa.218510 vs. TrEMBL
Match: A0A0A0K281_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.8e-32
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = 1

Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAQADQVIINV 83
           MTIGIGGGIG+G+  PG+ + IGGGIG+G+++ GGCKSHDPSKKWS  PN   D+V+   
Sbjct: 1   MTIGIGGGIGLGL--PGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPN---DRVVEIY 60

Query: 84  ANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEI 143
           A FAV  +N+K+G  LVF +VLEAWV V P GKKEYSIELV ++ C N  L +HA+V E 
Sbjct: 61  ARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTET 120

Query: 144 VGVPPGWNLFSFTQISD 159
                   L SF QI D
Sbjct: 121 GCAARRKTLVSFDQIDD 132

BLAST of Cucsa.218510 vs. TrEMBL
Match: A0A0A0K660_CUCSA (Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 76/134 (56.72%), Postives = 86/134 (64.18%), Query Frame = 1

Query: 27  GIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAQADQVIINVANF 86
           G+ GG+G G     +K  IGGGI +GS++ GGCKSHDPSKKW   PN Q    ++  A F
Sbjct: 7   GLDGGLGFGFSPFSLK--IGGGIDLGSKRPGGCKSHDPSKKWVICPNDQ----VVEAAKF 66

Query: 87  AVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEIVGV 146
           AVA FN+KYGN LVF  VLEAWV   P GKKEYSIELV  D CLNR L FHA+V E    
Sbjct: 67  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 126

Query: 147 PPGWNLFSFTQISD 159
                L SF QI D
Sbjct: 127 ARKRTLVSFDQIVD 134

BLAST of Cucsa.218510 vs. NCBI nr
Match: gi|778724618|ref|XP_011658840.1| (PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 8.1e-87
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1

Query: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60
           MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS
Sbjct: 1   MQWQPTKQNFQYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKS 60

Query: 61  HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI 120
           HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI
Sbjct: 61  HDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSI 120

Query: 121 ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 159
           ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD
Sbjct: 121 ELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD 158

BLAST of Cucsa.218510 vs. NCBI nr
Match: gi|659110227|ref|XP_008455116.1| (PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-55
Identity = 109/158 (68.99%), Postives = 123/158 (77.85%), Query Frame = 1

Query: 1   MQWQPTKQNF--QYYQISTKLAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGC 60
           MQWQPT        YQISTK  + KMT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGC
Sbjct: 1   MQWQPTHHKIFNTIYQISTKDQYKKMTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGC 60

Query: 61  KSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEY 120
           KSHDPSKKW+++ +   D  II +A FAV  FNQK+GN L F AVLEAWVVV  DGKKEY
Sbjct: 61  KSHDPSKKWTEIKSVN-DPAIIEIAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEY 120

Query: 121 SIELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQI 157
           SIELVAKDCL+RCL +HA+VIEI G PPGWNL SF QI
Sbjct: 121 SIELVAKDCLHRCLQYHAVVIEICGTPPGWNLVSFNQI 157

BLAST of Cucsa.218510 vs. NCBI nr
Match: gi|307136458|gb|ADN34263.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-49
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 1

Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 83
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 84  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 143
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 144 VPPGWNLFSFTQI 157
            PPGWNL SF QI
Sbjct: 121 TPPGWNLVSFNQI 132

BLAST of Cucsa.218510 vs. NCBI nr
Match: gi|307136459|gb|ADN34264.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-34
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 1

Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 83
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N +A  V +  A
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDV-LEAA 60

Query: 84  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE-IV 143
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC +R L FHA+VIE  V
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120

Query: 144 GVPPGWNLFSFTQISD 159
                W L SF +I D
Sbjct: 121 DHKKIWILVSFERIFD 134

BLAST of Cucsa.218510 vs. NCBI nr
Match: gi|778724610|ref|XP_011658838.1| (PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 9.7e-32
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = 1

Query: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAQADQVIINV 83
           MTIGIGGGIG+G+  PG+ + IGGGIG+G+++ GGCKSHDPSKKWS  PN   D+V+   
Sbjct: 1   MTIGIGGGIGLGL--PGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPN---DRVVEIY 60

Query: 84  ANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEI 143
           A FAV  +N+K+G  LVF +VLEAWV V P GKKEYSIELV ++ C N  L +HA+V E 
Sbjct: 61  ARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTET 120

Query: 144 VGVPPGWNLFSFTQISD 159
                   L SF QI D
Sbjct: 121 GCAARRKTLVSFDQIDD 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K477_CUCSA5.6e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1[more]
E5GCR5_CUCME9.4e-5072.18Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCR6_CUCME1.1e-3461.03Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K281_CUCSA6.8e-3256.93Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1[more]
A0A0A0K660_CUCSA1.6e-2856.72Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778724618|ref|XP_011658840.1|8.1e-87100.00PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus][more]
gi|659110227|ref|XP_008455116.1|1.6e-5568.99PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo][more]
gi|307136458|gb|ADN34263.1|1.4e-4972.18phloem filament protein [Cucumis melo subsp. melo][more]
gi|307136459|gb|ADN34264.1|1.6e-3461.03phloem filament protein [Cucumis melo subsp. melo][more]
gi|778724610|ref|XP_011658838.1|9.7e-3256.93PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009994PP1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.218510.1Cucsa.218510.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 79..140
score: 7.7
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 67..131
score: 2.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 66..143
score: 2.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None