Cucsa.218500 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.218500
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPhloem filament protein
Locationscaffold01658 : 591699 .. 592311 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCACCACAAAATTTTCATTACTATCAAATATCAACTAAAGATCACAAAAAAATGGCAGGTATTCTTGCTGGTCTTGATGGAGGACTTGGTTTTGGTTTTAGTCCTTTCAGTTTAAAGATCGGCGGAGGTATCGATCTCGGGAGTAAAAGGCCGGGGGGgTGCAAGAGTCATGATCCATCAAAAAAATGGGTTATATGTCCCAATGATCAAGTTGTAGAAGCTGCTAAGTTTGCAGTGGCTGAGTTCAACAAAAAaTATGGAAATAATCTTGTGTTTCAAGTAGTTTTGGAAGCTTGGGTTTTTACTAATCCTTGTGGGAAGAAAGAGTATAGTATTGAATTAGTAGTAATAGACGGCTGCTTGAATCGTGTTCTCAAGTTTCATGCAGTCGTGACTGAAACACCCTGTGCTGCTCGCAAGAGGACTCTGGTGTCTTTCGACCAAATCGTCGACTAAAAGAGAAGTTATATGTGCAATCAAAGTTTATACTGTGTGAGAAGTACACAATAATAAATCTTGTAGGATATTGTACTGCTCTACTTTCTTTCACTATCTGTTCTAAAATAATAATAATGGAGGCCAAACTACGTTTTTAGTCCCGAAACCCTATAA

mRNA sequence

CCCACCACAAAATTTTCATTACTATCAAATATCAACTAAAGATCACAAAAAAATGGCAGGTATTCTTGCTGGTCTTGATGGAGGACTTGGTTTTGGTTTTAGTCCTTTCAGTTTAAAGATCGGCGGAGGTATCGATCTCGGGAGTAAAAGGCCGGGGGGGTGCAAGAGTCATGATCCATCAAAAAAATGGGTTATATGTCCCAATGATCAAGTTGTAGAAGCTGCTAAGTTTGCAGTGGCTGAGTTCAACAAAAAATATGGAAATAATCTTGTGTTTCAAGTAGTTTTGGAAGCTTGGGTTTTTACTAATCCTTGTGGGAAGAAAGAGTATAGTATTGAATTAGTAGTAATAGACGGCTGCTTGAATCGTGTTCTCAAGTTTCATGCAGTCGTGACTGAAACACCCTGTGCTGCTCGCAAGAGGACTCTGGTGTCTTTCGACCAAATCGTCGACTAAAAGAGAAGTTATATGTGCAATCAAAGTTTATACTGTGTGAGAAGTACACAATAATAAATCTTGTAGGATATTGTACTGCTCTACTTTCTTTCACTATCTGTTCTAAAATAATAATAATGGAGGCCAAACTACGTTTTTAGTCCCGAAACCCTATAA

Coding sequence (CDS)

ATGGCAGGTATTCTTGCTGGTCTTGATGGAGGACTTGGTTTTGGTTTTAGTCCTTTCAGTTTAAAGATCGGCGGAGGTATCGATCTCGGGAGTAAAAGGCCGGGGGGgTGCAAGAGTCATGATCCATCAAAAAAATGGGTTATATGTCCCAATGATCAAGTTGTAGAAGCTGCTAAGTTTGCAGTGGCTGAGTTCAACAAAAAaTATGGAAATAATCTTGTGTTTCAAGTAGTTTTGGAAGCTTGGGTTTTTACTAATCCTTGTGGGAAGAAAGAGTATAGTATTGAATTAGTAGTAATAGACGGCTGCTTGAATCGTGTTCTCAAGTTTCATGCAGTCGTGACTGAAACACCCTGTGCTGCTCGCAAGAGGACTCTGGTGTCTTTCGACCAAATCGTCGACTAA

Protein sequence

MAGILAGLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKFAVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRTLVSFDQIVD*
Homology
[Close]
BLAST of Cucsa.218500 vs. TrEMBL
Match: A0A0A0K660_CUCSA (Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.4e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MAGILAGLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKF 60
           MAGILAGLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKF
Sbjct: 1   MAGILAGLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKF 60

Query: 61  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 120
           AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA
Sbjct: 61  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 120

Query: 121 ARKRTLVSFDQIVD 135
           ARKRTLVSFDQIVD
Sbjct: 121 ARKRTLVSFDQIVD 134

[Close]
BLAST of Cucsa.218500 vs. TrEMBL
Match: A0A0A0K281_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.8e-48
Identity = 93/129 (72.09%), Postives = 109/129 (84.50%), Query Frame = 1 

Query: 7   GLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEA-AKFAVAEF 66
           G+ GG+G G    ++KIGGGI LG+KRPGGCKSHDPSKKW +CPND+VVE  A+FAV E+
Sbjct: 4   GIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAVDEY 63

Query: 67  NKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRT 126
           N+K+G NLVFQ VLEAWV+  PCGKKEYSIELVV +GC N VLK+HAVVTET CAAR++T
Sbjct: 64  NRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTETGCAARRKT 123

Query: 127 LVSFDQIVD 135
           LVSFDQI D
Sbjct: 124 LVSFDQIDD 132

[Close]
BLAST of Cucsa.218500 vs. TrEMBL
Match: A0A0A0K477_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 76/134 (56.72%), Postives = 86/134 (64.18%), Query Frame = 1 

Query: 7   GLDGGLGFGFSPFSLK--IGGGIDLGSKRPGGCKSHDPSKKWVICPNDQ----VVEAAKF 66
           G+ GG+G G     +K  IGGGI +GS++ GGCKSHDPSKKW   PN Q    ++  A F
Sbjct: 27  GIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAQADQVIINVANF 86

Query: 67  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 126
           AVA FN+KYGN LVF  VLEAWV   P GKKEYSIELV  D CLNR L FHA+V E    
Sbjct: 87  AVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEIVGV 146

Query: 127 ARKRTLVSFDQIVD 135
                L SF QI D
Sbjct: 147 PPGWNLFSFTQISD 158

[Close]
BLAST of Cucsa.218500 vs. TrEMBL
Match: E5GCR5_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-26
Identity = 72/133 (54.14%), Postives = 90/133 (67.67%), Query Frame = 1 

Query: 7   GLDGGL--GFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKW--VICPNDQ-VVEAAKFA 66
           G+ GG+  G G    ++ IGGGI +  ++ GGCKSHDPSKKW  +   ND  ++E AKFA
Sbjct: 4   GIGGGISIGLGIPGINISIGGGIGIRGRK-GGCKSHDPSKKWTEIKSVNDPAIIEIAKFA 63

Query: 67  VAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAA 126
           V  FN+K+GNNL FQ VLEAWV  +  GKKEYSIELV  D CL+R L++HAVV E     
Sbjct: 64  VKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEICGTP 123

Query: 127 RKRTLVSFDQIVD 135
               LVSF+QIV+
Sbjct: 124 PGWNLVSFNQIVE 134

[Close]
BLAST of Cucsa.218500 vs. TrEMBL
Match: E5GCR6_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-25
Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 1 

Query: 11  GLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPN---DQVVEAAKFAVAEFNK 70
           G+GFG   F++ IGGGI +G ++ GGCKSH+PSKKW+   N     V+EAAKFAV  FNK
Sbjct: 10  GIGFGLPGFNISIGGGIGIGGRK-GGCKSHNPSKKWIQLHNVKAPDVLEAAKFAVDAFNK 69

Query: 71  KYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARK-RTL 130
           KY NNL FQ V EAWV      +KEYSIELV  D C +R+L+FHAVV E     +K   L
Sbjct: 70  KYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKD-CFHRLLEFHAVVIEKTVDHKKIWIL 129

Query: 131 VSFDQIVD 135
           VSF++I D
Sbjct: 130 VSFERIFD 134

[Close]
BLAST of Cucsa.218500 vs. NCBI nr
Match: gi|778724613|ref|XP_011658839.1| (PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 6.3e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MAGILAGLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKF 60
           MAGILAGLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKF
Sbjct: 1   MAGILAGLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEAAKF 60

Query: 61  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 120
           AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA
Sbjct: 61  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 120

Query: 121 ARKRTLVSFDQIVD 135
           ARKRTLVSFDQIVD
Sbjct: 121 ARKRTLVSFDQIVD 134

[Close]
BLAST of Cucsa.218500 vs. NCBI nr
Match: gi|778724610|ref|XP_011658838.1| (PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 93/129 (72.09%), Postives = 109/129 (84.50%), Query Frame = 1 

Query: 7   GLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEA-AKFAVAEF 66
           G+ GG+G G    ++KIGGGI LG+KRPGGCKSHDPSKKW +CPND+VVE  A+FAV E+
Sbjct: 4   GIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAVDEY 63

Query: 67  NKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRT 126
           N+K+G NLVFQ VLEAWV+  PCGKKEYSIELVV +GC N VLK+HAVVTET CAAR++T
Sbjct: 64  NRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTETGCAARRKT 123

Query: 127 LVSFDQIVD 135
           LVSFDQI D
Sbjct: 124 LVSFDQIDD 132

[Close]
BLAST of Cucsa.218500 vs. NCBI nr
Match: gi|778724618|ref|XP_011658840.1| (PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-28
Identity = 76/134 (56.72%), Postives = 86/134 (64.18%), Query Frame = 1 

Query: 7   GLDGGLGFGFSPFSLK--IGGGIDLGSKRPGGCKSHDPSKKWVICPNDQ----VVEAAKF 66
           G+ GG+G G     +K  IGGGI +GS++ GGCKSHDPSKKW   PN Q    ++  A F
Sbjct: 27  GIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAQADQVIINVANF 86

Query: 67  AVAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCA 126
           AVA FN+KYGN LVF  VLEAWV   P GKKEYSIELV  D CLNR L FHA+V E    
Sbjct: 87  AVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEIVGV 146

Query: 127 ARKRTLVSFDQIVD 135
                L SF QI D
Sbjct: 147 PPGWNLFSFTQISD 158

[Close]
BLAST of Cucsa.218500 vs. NCBI nr
Match: gi|659110227|ref|XP_008455116.1| (PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-26
Identity = 72/133 (54.14%), Postives = 90/133 (67.67%), Query Frame = 1 

Query: 7   GLDGGL--GFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKW--VICPNDQ-VVEAAKFA 66
           G+ GG+  G G    ++ IGGGI +  ++ GGCKSHDPSKKW  +   ND  ++E AKFA
Sbjct: 29  GIGGGISIGLGIPGINISIGGGIGIRGRK-GGCKSHDPSKKWTEIKSVNDPAIIEIAKFA 88

Query: 67  VAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAA 126
           V  FN+K+GNNL FQ VLEAWV  +  GKKEYSIELV  D CL+R L++HAVV E     
Sbjct: 89  VKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEICGTP 148

Query: 127 RKRTLVSFDQIVD 135
               LVSF+QIV+
Sbjct: 149 PGWNLVSFNQIVE 159

[Close]
BLAST of Cucsa.218500 vs. NCBI nr
Match: gi|307136458|gb|ADN34263.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-26
Identity = 72/133 (54.14%), Postives = 90/133 (67.67%), Query Frame = 1 

Query: 7   GLDGGL--GFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKW--VICPNDQ-VVEAAKFA 66
           G+ GG+  G G    ++ IGGGI +  ++ GGCKSHDPSKKW  +   ND  ++E AKFA
Sbjct: 4   GIGGGISIGLGIPGINISIGGGIGIRGRK-GGCKSHDPSKKWTEIKSVNDPAIIEIAKFA 63

Query: 67  VAEFNKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAA 126
           V  FN+K+GNNL FQ VLEAWV  +  GKKEYSIELV  D CL+R L++HAVV E     
Sbjct: 64  VKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEICGTP 123

Query: 127 RKRTLVSFDQIVD 135
               LVSF+QIV+
Sbjct: 124 PGWNLVSFNQIVE 134

The following BLAST results are available for this feature:
BLAST of Cucsa.218500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K660_CUCSA4.4e-72100.00Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1[more]
A0A0A0K281_CUCSA9.8e-4872.09Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1[more]
A0A0A0K477_CUCSA1.3e-2856.72Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1[more]
E5GCR5_CUCME6.2e-2654.14Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCR6_CUCME5.2e-2555.47Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cucsa.218500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778724613|ref|XP_011658839.1|6.3e-72100.00PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus][more]
gi|778724610|ref|XP_011658838.1|1.4e-4772.09PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus][more]
gi|778724618|ref|XP_011658840.1|1.9e-2856.72PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus][more]
gi|659110227|ref|XP_008455116.1|8.8e-2654.14PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo][more]
gi|307136458|gb|ADN34263.1|8.8e-2654.14phloem filament protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020381Proteinase inhibitor I25, cystatin, conserved region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.218500.1Cucsa.218500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPFAMPF16845SQAPIcoord: 51..131
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 51..128
score: 2.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 51..132
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.218500Cucumber (Chinese Long) v3cgycucB342
Cucsa.218500Watermelon (97103) v2cgywmbB393
Cucsa.218500Watermelon (97103) v2cgywmbB399
Cucsa.218500Wax gourdcgywgoB443
Cucsa.218500Wax gourdcgywgoB445
Cucsa.218500Cucurbita maxima (Rimu)cgycmaB0620
Cucsa.218500Cucurbita maxima (Rimu)cgycmaB0624
Cucsa.218500Cucurbita maxima (Rimu)cgycmaB0629
Cucsa.218500Cucurbita moschata (Rifu)cgycmoB0624
Cucsa.218500Cucurbita moschata (Rifu)cgycmoB0627
Cucsa.218500Cucurbita moschata (Rifu)cgycmoB0632
Cucsa.218500Wild cucumber (PI 183967)cgycpiB335
Cucsa.218500Wild cucumber (PI 183967)cgycpiB336
Cucsa.218500Cucumber (Chinese Long) v2cgycuB322
Cucsa.218500Melon (DHL92) v3.5.1cgymeB379
Cucsa.218500Melon (DHL92) v3.5.1cgymeB383
Cucsa.218500Watermelon (Charleston Gray)cgywcgB391
Cucsa.218500Watermelon (Charleston Gray)cgywcgB393
Cucsa.218500Watermelon (97103) v1cgywmB415
Cucsa.218500Watermelon (97103) v1cgywmB421
Cucsa.218500Cucurbita pepo (Zucchini)cgycpeB0594
Cucsa.218500Cucurbita pepo (Zucchini)cgycpeB0599
Cucsa.218500Cucurbita pepo (Zucchini)cgycpeB0602
Cucsa.218500Bottle gourd (USVL1VR-Ls)cgylsiB366
Cucsa.218500Bottle gourd (USVL1VR-Ls)cgylsiB367
Cucsa.218500Melon (DHL92) v3.6.1cgymedB377
Cucsa.218500Melon (DHL92) v3.6.1cgymedB381
Cucsa.218500Silver-seed gourdcarcgyB0339
Cucsa.218500Silver-seed gourdcarcgyB0435
Cucsa.218500Silver-seed gourdcarcgyB0825