Cucsa.213690 (gene) Cucumber (Gy14) v1

NameCucsa.213690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Locationscaffold01543 : 1540292 .. 1540509 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAGTATTTATTTATAAACTCTCCCGGTGGATCGGTAATACCCGGAGTAGGTCTTTTTGATACTATGCAATTTGTGTCACCAGATGTCCATACAATATGTATTGGATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCTACATTTCTTTTATTTTATTTTGGTGAATTTATAA

mRNA sequence

ATCAGTATTTATTTATAAACTCTCCCGGTGGATCGGTAATACCCGGAGTAGGTCTTTTTGATACTATGCAATTTGTGTCACCAGATGTCCATACAATATGTATTGGATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCTACATTTCTTTTATTTTATTTTGGTGAATTTATAA

Coding sequence (CDS)

ATCAGTATTTATTTATAAACTCTCCCGGTGGATCGGTAATACCCGGAGTAGGTCTTTTTGATACTATGCAATTTGTGTCACCAGATGTCCATACAATATGTATTGGATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCTACATTTCTTTTATTTTATTTTGGTGAATTTATAA

Protein sequence

QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARLHFFYFILVNL*
BLAST of Cucsa.213690 vs. Swiss-Prot
Match: CLPP_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=clpP PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 60
           QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 63  QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 122

Query: 61  L 62
           +
Sbjct: 123 V 123

BLAST of Cucsa.213690 vs. Swiss-Prot
Match: CLPP_CALFG (ATP-dependent Clp protease proteolytic subunit OS=Calycanthus floridus var. glaucus GN=clpP PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-25
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           YLFINSPGG VIPG+ ++DTMQFVSPDVHTIC+GLAASMGSFILVGGEITKRLAFPHAR+
Sbjct: 64  YLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARV 123

BLAST of Cucsa.213690 vs. Swiss-Prot
Match: CLPP_ACOGR (ATP-dependent Clp protease proteolytic subunit OS=Acorus gramineus GN=clpP PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.8e-25
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           +LFINSPGG VIPG+GL+DTMQFV PDVHTIC+GLAASMGSFILVGGEITKRLAFPHAR+
Sbjct: 64  FLFINSPGGWVIPGIGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARV 123

BLAST of Cucsa.213690 vs. Swiss-Prot
Match: CLPP_ACOCL (ATP-dependent Clp protease proteolytic subunit OS=Acorus calamus GN=clpP PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.8e-25
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           +LFINSPGG VIPG+GL+DTMQFV PDVHTIC+GLAASMGSFILVGGEITKRLAFPHAR+
Sbjct: 64  FLFINSPGGWVIPGIGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARV 123

BLAST of Cucsa.213690 vs. Swiss-Prot
Match: CLPP_TOBAC (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-24
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           YLFINSPGG VIPGV ++DTMQFV PDVHTIC+GLAASMGSFILVGGEITKRLAFPHAR+
Sbjct: 64  YLFINSPGGWVIPGVAIYDTMQFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARV 123

BLAST of Cucsa.213690 vs. TrEMBL
Match: W8E152_9ROSI (ATP-dependent Clp protease proteolytic subunit OS=Cucumis hystrix GN=clpP PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.3e-26
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 60
           QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 62  QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 121

Query: 61  L 62
           +
Sbjct: 122 V 122

BLAST of Cucsa.213690 vs. TrEMBL
Match: H2FD39_9ASPA (ATP-dependent Clp protease proteolytic subunit OS=Beaucarnea hookeri GN=clpP PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-23
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           YLFINSPGG VIPG+ ++DTMQFVSPDVHTIC+GLAASMGSFILVGGEITKRLAFPHA L
Sbjct: 64  YLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAML 123

Query: 62  HFFYFILVN 71
           + +  ++++
Sbjct: 124 YQYIRVMIH 132

BLAST of Cucsa.213690 vs. TrEMBL
Match: A0A0D3LZ42_9ASPA (ATP-dependent Clp protease proteolytic subunit OS=Cypripedium formosanum GN=clpP PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-23
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           YLFINSPGG VIPG+ ++DTMQFVSPDVHTIC+GLAASMGSFILVGGEITKRLAFPHA +
Sbjct: 63  YLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAMI 122

Query: 62  H 63
           H
Sbjct: 123 H 123

BLAST of Cucsa.213690 vs. TrEMBL
Match: A0A161GBB7_9LILI (Clp protease proteolytic subunit (Fragment) OS=Campynema lineare GN=clpP PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.4e-23
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 2  YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
          YLFINSPGG VIPG+GL+DTMQFV PDVHTIC+GLAASMGSFILVGGEITKRLAFPHAR+
Sbjct: 40 YLFINSPGGWVIPGMGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARV 99

BLAST of Cucsa.213690 vs. TrEMBL
Match: U5LTP3_9LILI (ATP-dependent Clp protease proteolytic subunit OS=Veratrum patulum GN=clpP PE=3 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 4.4e-23
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           YLFINSPGG VIPG+G++DTMQFV PDVHTIC+GLAASMGSFILVGGEITKRLAFPHAR+
Sbjct: 63  YLFINSPGGWVIPGIGIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARV 122

BLAST of Cucsa.213690 vs. TAIR10
Match: ATCG00670.1 (ATCG00670.1 plastid-encoded CLP P)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-21
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           YLFINSPGG VI G+ ++DTMQFV PDV TIC+GLAAS+ SFILVGG ITKR+AFPHAR+
Sbjct: 64  YLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARV 123

BLAST of Cucsa.213690 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 74.7 bits (182), Expect = 2.6e-14
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1

Query: 3   LFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 62
           +++NSPGGSV  G+ +FDTM+ + PDV T+C+GLAASMG+F+L  G   KR + P++R+
Sbjct: 157 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRI 215

BLAST of Cucsa.213690 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 69.7 bits (169), Expect = 8.3e-13
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1

Query: 3   LFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 62
           LFINSPGGS+  G+G++D M+    DV T+C+GLAASMG+F+L  G   KR   P++++
Sbjct: 128 LFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKV 186

BLAST of Cucsa.213690 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-10
Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHA 60
           ++++NSPGG V  G+ ++DTMQ++   + TIC+G AASM S +L  G   +R + P+A
Sbjct: 90  HMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNA 147

BLAST of Cucsa.213690 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-09
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1

Query: 3   LFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 62
           LFINSPGGS+   + ++D +Q V  DV TI +G+AAS  S IL  G   KR A P+ R+
Sbjct: 122 LFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRI 180

BLAST of Cucsa.213690 vs. NCBI nr
Match: gi|122202884|sp|Q2QD64.1|CLPP_CUCSA (RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp)

HSP 1 Score: 124.8 bits (312), Expect = 6.2e-26
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 60
           QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 63  QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 122

Query: 61  L 62
           +
Sbjct: 123 V 123

BLAST of Cucsa.213690 vs. NCBI nr
Match: gi|590000439|ref|YP_009004068.1| (clp protease proteolytic subunit [Cucumis hystrix])

HSP 1 Score: 124.8 bits (312), Expect = 6.2e-26
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 60
           QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 62  QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 121

Query: 61  L 62
           +
Sbjct: 122 V 122

BLAST of Cucsa.213690 vs. NCBI nr
Match: gi|334903533|gb|AEH25783.1| (clpp protease [synthetic construct])

HSP 1 Score: 124.8 bits (312), Expect = 6.2e-26
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1  QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 60
          QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 30 QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 89

Query: 61 L 62
          +
Sbjct: 90 V 90

BLAST of Cucsa.213690 vs. NCBI nr
Match: gi|68164829|ref|YP_247625.1| (ATP-dependent Clp protease proteolytic subunit [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHAR 60
           QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTIC+GLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 63  QYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAR 122

Query: 61  L 62
           +
Sbjct: 123 V 123

BLAST of Cucsa.213690 vs. NCBI nr
Match: gi|372485872|gb|AEX96572.1| (clp protease proteolytic subunit (chloroplast) [Beaucarnea hookeri])

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1

Query: 2   YLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARL 61
           YLFINSPGG VIPG+ ++DTMQFVSPDVHTIC+GLAASMGSFILVGGEITKRLAFPHA L
Sbjct: 64  YLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAML 123

Query: 62  HFFYFILVN 71
           + +  ++++
Sbjct: 124 YQYIRVMIH 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CLPP_CUCSA3.9e-2898.36ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=clpP PE=3 S... [more]
CLPP_CALFG5.2e-2588.33ATP-dependent Clp protease proteolytic subunit OS=Calycanthus floridus var. glau... [more]
CLPP_ACOGR6.8e-2588.33ATP-dependent Clp protease proteolytic subunit OS=Acorus gramineus GN=clpP PE=3 ... [more]
CLPP_ACOCL6.8e-2588.33ATP-dependent Clp protease proteolytic subunit OS=Acorus calamus GN=clpP PE=3 SV... [more]
CLPP_TOBAC1.5e-2488.33ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2... [more]
Match NameE-valueIdentityDescription
W8E152_9ROSI4.3e-2698.36ATP-dependent Clp protease proteolytic subunit OS=Cucumis hystrix GN=clpP PE=3 S... [more]
H2FD39_9ASPA2.0e-2376.81ATP-dependent Clp protease proteolytic subunit OS=Beaucarnea hookeri GN=clpP PE=... [more]
A0A0D3LZ42_9ASPA2.6e-2386.89ATP-dependent Clp protease proteolytic subunit OS=Cypripedium formosanum GN=clpP... [more]
A0A161GBB7_9LILI4.4e-2390.00Clp protease proteolytic subunit (Fragment) OS=Campynema lineare GN=clpP PE=4 SV... [more]
U5LTP3_9LILI4.4e-2388.33ATP-dependent Clp protease proteolytic subunit OS=Veratrum patulum GN=clpP PE=3 ... [more]
Match NameE-valueIdentityDescription
ATCG00670.11.7e-2176.67ATCG00670.1 plastid-encoded CLP P[more]
AT1G02560.12.6e-1452.54 nuclear encoded CLP protease 5[more]
AT1G66670.18.3e-1350.85 CLP protease proteolytic subunit 3[more]
AT5G23140.15.0e-1043.10 nuclear-encoded CLP protease P7[more]
AT5G45390.11.9e-0949.15 CLP protease P4[more]
Match NameE-valueIdentityDescription
gi|122202884|sp|Q2QD64.1|CLPP_CUCSA6.2e-2698.36RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endo... [more]
gi|590000439|ref|YP_009004068.1|6.2e-2698.36clp protease proteolytic subunit [Cucumis hystrix][more]
gi|334903533|gb|AEH25783.1|6.2e-2698.36clpp protease [synthetic construct][more]
gi|68164829|ref|YP_247625.1|1.4e-2596.72ATP-dependent Clp protease proteolytic subunit [Cucumis sativus][more]
gi|372485872|gb|AEX96572.1|2.9e-2376.81clp protease proteolytic subunit (chloroplast) [Beaucarnea hookeri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001907ClpP
IPR018215ClpP_Ser_AS
IPR023562ClpP/TepA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0004252 serine-type endopeptidase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.213690.1Cucsa.213690.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001907ATP-dependent Clp protease proteolytic subunitPRINTSPR00127CLPPROTEASEPcoord: 52..71
score: 3.3E-8coord: 31..48
score: 3.
IPR018215ClpP, Ser active sitePROSITEPS00381CLP_PROTEASE_SERcoord: 31..42
scor
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPANTHERPTHR10381ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNITcoord: 2..60
score: 7.4
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPFAMPF00574CLP_proteasecoord: 2..61
score: 1.2
NoneNo IPR availablePANTHERPTHR10381:SF19ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1coord: 2..60
score: 7.4