Cucsa.207470 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.207470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mitochondrial import inner membrane translocase subunit Tim10
Location	scaffold01443 : 304775 .. 305058 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTAACGCAATCATGTTTTGATAACTGTGTTGACAAGAGGTTGGACAGTTGTCTAATCTTGAATATTGCATGCTTTCTAACCATAGAATTCAATTTCTCATGGCTATTGTTTTTAGCATTATAAGATTGATTCTATCTTATTATTCATTTTGAGATTTATGCATGGTCTTTTGTCATTCAACAACTACCATCTATTTTATTTTAGGTACAAGGAATCTGAGCTGAATATGTGTAAAAATAGTTGTATTGACCACTGTGTTTCCAAGTATTGGCATGTAAGCTGA

mRNA sequence

GCTAACGCAATCATGTTTTGATAACTGTGTTGACAAGAGGTACAAGGAATCTGAGCTGAATATGTGTAAAAATAGTTGTATTGACCACTGTGTTTCCAAGTATTGGCATGTAAGCTGA

Coding sequence (CDS)

GCTAACGCAATCATGTTTTGATAACTGTGTTGACAAGAGGTACAAGGAATCTGAGCTGAATATGTGTAAAAATAGTTGTATTGACCACTGTGTTTCCAAGTATTGGCATGTAAGCTGA

Protein sequence

LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS*

Homology

[Close]

BLAST of Cucsa.207470 vs. Swiss-Prot
Match: TIM10_ARATH (Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana GN=TIM10 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-11
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          L Q+CF+ CVDKRYKE+ELNM +NSCID CVSKYW V+
Sbjct: 32 LAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVN 69

[Close]

BLAST of Cucsa.207470 vs. TrEMBL
Match: A0A0A0LVG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527890 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          LTQSCF+ CVDKRYKESELNM +NSCID CVSKYWHV+
Sbjct: 34 LTQSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVT 71

[Close]

BLAST of Cucsa.207470 vs. TrEMBL
Match: A0A0R0GDI8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G229800 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.0e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          +TQ+CF+ CVD RYKESELNM +NSCIDHC SKYWHV+
Sbjct: 16 MTQTCFNKCVDNRYKESELNMGENSCIDHCASKYWHVT 53

[Close]

BLAST of Cucsa.207470 vs. TrEMBL
Match: A0A0B2RLH8_GLYSO (Mitochondrial import inner membrane translocase subunit Tim10 (Fragment) OS=Glycine soja GN=glysoja_038777 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-10
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHV 38
          +TQ+CF+ CVD RYKESELNM +NSCIDHC SKYWHV
Sbjct: 20 MTQTCFNKCVDNRYKESELNMGENSCIDHCASKYWHV 56

[Close]

BLAST of Cucsa.207470 vs. TrEMBL
Match: K7MDA8_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-10
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHV 38
          +TQ+CF+ CVD RYKESELNM +NSCIDHC SKYWHV
Sbjct: 16 MTQTCFNKCVDNRYKESELNMGENSCIDHCASKYWHV 52

[Close]

BLAST of Cucsa.207470 vs. TrEMBL
Match: C6T199_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          +TQ+CF+ CVD RYKESELNM +NSCID CVSKYWHV+
Sbjct: 33 MTQTCFNKCVDNRYKESELNMGENSCIDRCVSKYWHVT 70

[Close]

BLAST of Cucsa.207470 vs. TAIR10
Match: AT2G29530.3 (AT2G29530.3 Tim10/DDP family zinc finger protein)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-12
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          L Q+CF+ CVDKRYKE+ELNM +NSCID CVSKYW V+
Sbjct: 56 LAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVN 93

[Close]

BLAST of Cucsa.207470 vs. NCBI nr
Match: gi|449455056|ref|XP_004145269.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          LTQSCF+ CVDKRYKESELNM +NSCID CVSKYWHV+
Sbjct: 34 LTQSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVT 71

[Close]

BLAST of Cucsa.207470 vs. NCBI nr
Match: gi|571520947|ref|XP_006598086.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM10-like [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          +TQ+CF+ CVD RYKESELNM +NSCIDHC SKYWHV+
Sbjct: 16 MTQTCFNKCVDNRYKESELNMGENSCIDHCASKYWHVT 53

[Close]

BLAST of Cucsa.207470 vs. NCBI nr
Match: gi|734404112|gb|KHN32848.1| (Mitochondrial import inner membrane translocase subunit Tim10, partial [Glycine soja])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-10
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHV 38
          +TQ+CF+ CVD RYKESELNM +NSCIDHC SKYWHV
Sbjct: 20 MTQTCFNKCVDNRYKESELNMGENSCIDHCASKYWHV 56

[Close]

BLAST of Cucsa.207470 vs. NCBI nr
Match: gi|356501739|ref|XP_003519681.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Glycine max])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          +TQ+CF+ CVD RYKESELNM +NSCID CVSKYWHV+
Sbjct: 33 MTQTCFNKCVDNRYKESELNMGENSCIDRCVSKYWHVT 70

[Close]

BLAST of Cucsa.207470 vs. NCBI nr
Match: gi|356557736|ref|XP_003547167.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM10-like [Glycine max])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 1  LTQSCFDNCVDKRYKESELNMCKNSCIDHCVSKYWHVS 39
          +TQ+CF+ CVD RYKESELNM +NSCID CVSKYWHV+
Sbjct: 33 MTQTCFNKCVDNRYKESELNMGENSCIDRCVSKYWHVT 70

The following BLAST results are available for this feature:

BLAST of Cucsa.207470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM10_ARATH	2.3e-11	73.68	Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis tha...	[more]

BLAST of Cucsa.207470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVG1_CUCSA	1.6e-11	84.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527890 PE=3 SV=1	[more]
A0A0R0GDI8_SOYBN	8.0e-11	76.32	Uncharacterized protein OS=Glycine max GN=GLYMA_15G229800 PE=3 SV=1	[more]
A0A0B2RLH8_GLYSO	1.0e-10	78.38	Mitochondrial import inner membrane translocase subunit Tim10 (Fragment) OS=Glyc...	[more]
K7MDA8_SOYBN	1.0e-10	78.38	Uncharacterized protein OS=Glycine max PE=3 SV=1	[more]
C6T199_SOYBN	2.3e-10	76.32	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of Cucsa.207470 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29530.3	1.3e-12	73.68	Tim10/DDP family zinc finger protein	[more]

BLAST of Cucsa.207470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455056\|ref\|XP_004145269.1\|	2.3e-11	84.21	PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Cucumi...	[more]
gi\|571520947\|ref\|XP_006598086.1\|	1.2e-10	76.32	PREDICTED: mitochondrial import inner membrane translocase subunit TIM10-like [G...	[more]
gi\|734404112\|gb\|KHN32848.1\|	1.5e-10	78.38	Mitochondrial import inner membrane translocase subunit Tim10, partial [Glycine ...	[more]
gi\|356501739\|ref\|XP_003519681.1\|	3.4e-10	76.32	PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Glycin...	[more]
gi\|356557736\|ref\|XP_003547167.1\|	3.4e-10	76.32	PREDICTED: mitochondrial import inner membrane translocase subunit TIM10-like [G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004217	Tim10-like
IPR027247	Mitochondrial import inner membrane translocase subunit Tim10/Tim12

Vocabulary: **Biological Process**
Term	Definition
GO:0045039	protein import into mitochondrial inner membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein import into mitochondrial inner membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.207470.1	Cucsa.207470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10/DDP family zinc finger	GENE3D	G3DSA:1.10.287.810		coord: 1..38 score: 1.6
IPR004217	Tim10/DDP family zinc finger	PFAM	PF02953	zf-Tim10_DDP	coord: 1..38 score: 5.
IPR004217	Tim10/DDP family zinc finger	unknown	SSF144122	Tim10-like	coord: 1..37 score: 8.76
IPR027247	Mitochondrial import inner membrane translocase subunit Tim10/Tim12	PANTHER	PTHR11038	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10	coord: 1..35 score: 6.4
None	No IPR available	PANTHER	PTHR11038:SF17	SUBFAMILY NOT NAMED	coord: 1..35 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.207470	Silver-seed gourd	carcgyB0511
Cucsa.207470	Cucumber (Chinese Long) v3	cgycucB332
Cucsa.207470	Watermelon (97103) v2	cgywmbB386
Cucsa.207470	Wax gourd	cgywgoB435
Cucsa.207470	Cucurbita maxima (Rimu)	cgycmaB0610
Cucsa.207470	Cucurbita maxima (Rimu)	cgycmaB0611
Cucsa.207470	Cucurbita moschata (Rifu)	cgycmoB0611
Cucsa.207470	Cucurbita moschata (Rifu)	cgycmoB0612
Cucsa.207470	Wild cucumber (PI 183967)	cgycpiB327
Cucsa.207470	Cucumber (Chinese Long) v2	cgycuB314
Cucsa.207470	Melon (DHL92) v3.5.1	cgymeB374
Cucsa.207470	Watermelon (Charleston Gray)	cgywcgB383
Cucsa.207470	Watermelon (97103) v1	cgywmB407
Cucsa.207470	Cucurbita pepo (Zucchini)	cgycpeB0582
Cucsa.207470	Cucurbita pepo (Zucchini)	cgycpeB0583
Cucsa.207470	Bottle gourd (USVL1VR-Ls)	cgylsiB354
Cucsa.207470	Melon (DHL92) v3.6.1	cgymedB371