Cucsa.207340 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.207340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Translation elongation factor EF-1 alpha
Location	scaffold01443 : 183245 .. 185097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATCCCAGGCTGTGCAAAGTCTGCTCTTTGCAAAGAGATACTGAAAGCTCCAGGAGCACTTGGAGATGATCGGCCAGTCAATACTCTAATGGGTGATCTGATTAAAGGTATTACTGGAATTCCTTGACTCTTCACAGATTCTAAGCTAGCAATTTCCGATGTTCCCCCAACACACACACACACACACACACACGAACCAAAAAGAAAGAAGTGAAGGAAGGAAGAACAACTTTCACTAAGAGTAAGACCTAACTTTGACTATCAAATTTACTTTAATCCCATGGCAAATAGGTTACTTTTTTTGGCATTAATTGTCTTTACAGAGCCTTTCTTTCTATTTGAAAATGCTCTGCTTAATTGTATGTATAATTCTTTCTACTGGTTAACTACAGAAAGCATGCAGGCTTAATTAGTAAAAAGCATTGAAAAGCTAAATCAAGAGTTTGATAAATTTCTACAGTAGGGTTTGTATTTATCTTTCAGTTTGATAGATTTTTTTATTTCTTTGAATGAAATGATCCAATGAGATACAAAAGGAGGACTCAATTAAAGGGTGTACAAAAGTTTCTCAATTTGTTACAAGGGAAATTAAGTTGTTAAAAGGCTGTAAATGTTCGGTCTCAACCTAGTTGAGATGTTCGGGTGCGCCTCCTGATCCCTCTAAGACTCCCTTGATTTCCAATTTTATATAAATATCTTGTACTTTGTTCATATTAATAAAGAAGTTTTTGTCTCCATTTCAAAAAAAGTTGTTAAAAGGCTGTAAATGTTCGCACCAGTTCAAAGTTAAAATTTTATTTATTATTATTTTTTTATAAAGCTTCTTCGCCTTTAGAAGTTCAACTTTTTTAAAAAAAAATTGTCGAGAGAAAAATGTATAGCCTACAGGTTCCAGAATTGGGTTTTTGGGCCTTCTCAAGGTGTTTAATTTATATTTCATTCTAACTTCCTAATTGCTTTGGTCATTCTAAGCATGTTTTTCCTTCTTGTATTTCATTCTAACTTCCTAATTGCTTTGGTCTCTAAAAAAGTTTTTTTGAGGAGGAAATGAGTTTCAATATCATTAATGTTTAAAAATAGAGAGAATACGGATATGGATGTATTGCATTAACTTTCTTTTCTTTTTAAGAGAGTATTGATGTATTGCATTGAAAATACGGATATGTGCTTTTGGATTTGGAAGAATGTCATTTAGGACGGGATATGATGTTTGGCGCTAAGGGGGTATCAACCTAGTTGAGATGTCCGGGTGCACCTCCTGATCCCTCTAGGTCTCCTTTGATTACTACTTCTTTTTGGCTATCTTTGTATATCTCTCTTGTACTTTGAGTTCTTATTAATAAAGAAGTTCTTGTCTCCGTTTCAAAAAAAGAATGTCATTTAGGAGATTGCGTTTTTCTAATGCCCAAAATGCTTGATTAAGAGTGTTGGACATAATTTTGAACAATTGAACTTGTTTCTTATATATTTAATATGTACAGGAAGATATTGGCAGAAGGTTGCTGATGACCGTAGGAGAAAGCCATACTCTATAATGCTTGCAGACAAAAATGCACCAAATGAAGAAGTGTGGAGACAAGTAATGTTCCTGTTCCTTACTCTAAATAGTAAACATCGATTCAGCGAACAAAGCAGGAGAAATATAAAATGAAGTGTCTAATGTTAGGCTCTTAGCATTTTATCTCTATCTCCATTATCAACTTATTATTTGAAAATGAGACTTCAGATTATTAAAAAAGTATACCAGAAGAAAGTAGGACGAGTCCTTAGAATGATCTAGTTAGTTACTGCTTGTAATATTCAGGTTCCTTCTTTCTCTGTGGCCAACTGTACGAATTTTCCAGTCATGTAA

mRNA sequence

GAATCCCAGGCTGTGCAAAGTCTGCTCTTTGCAAAGAGATACTGAAAGCTCCAGGAGCACTTGGAGATGATCGGCCAGTCAATACTCTAATGGGTGATCTGATTAAAGGAAGATATTGGCAGAAGGTTGCTGATGACCGTAGGAGAAAGCCATACTCTATAATGCTTGCAGACAAAAATGCACCAAATGAAGAAGTGTGGAGACAAGTTCCTTCTTTCTCTGTGGCCAACTGTACGAATTTTCCAGTCATGTAA

Coding sequence (CDS)

GAATCCCAGGCTGTGCAAAGTCTGCTCTTTGCAAAGAGATACTGAAAGCTCCAGGAGCACTTGGAGATGATCGGCCAGTCAATACTCTAATGGGTGATCTGATTAAAGGAAGATATTGGCAGAAGGTTGCTGATGACCGTAGGAGAAAGCCATACTCTATAATGCTTGCAGACAAAAATGCACCAAATGAAGAAGTGTGGAGACAAGTTCCTTCTTTCTCTGTGGCCAACTGTACGAATTTTCCAGTCATGTAA

Protein sequence

IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNAPNEEVWRQVPSFSVANCTNFPVM*

Homology

[Close]

BLAST of Cucsa.207340 vs. TrEMBL
Match: A0A0A0LXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G087430 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA
Sbjct: 571 IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 630

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 631 PNEEVWRQI 639

[Close]

BLAST of Cucsa.207340 vs. TrEMBL
Match: I3VB55_SOLME (tRNA ligase OS=Solanum melongena PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-30
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKEIL APG LGDDRPVN+LMGDLIKGRYWQKVAD+RRRKPYSIMLADKNA
Sbjct: 761 IPGCAKSALCKEILNAPGGLGDDRPVNSLMGDLIKGRYWQKVADERRRKPYSIMLADKNA 820

Query: 61  PNEEVWRQVPSFSVA 76
           PNEEVW+Q+ +  ++
Sbjct: 821 PNEEVWKQIENMCLS 835

[Close]

BLAST of Cucsa.207340 vs. TrEMBL
Match: W9SCB2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014416 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.8e-30
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKE+L APG LGDDRPV +LMGDLIKGRYWQKVAD+RRRKPYSIMLADKNA
Sbjct: 823 IPGCAKSALCKELLNAPGGLGDDRPVQSLMGDLIKGRYWQKVADERRRKPYSIMLADKNA 882

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 883 PNEEVWRQI 891

[Close]

BLAST of Cucsa.207340 vs. TrEMBL
Match: A0A0V0IZE4_SOLCH (Putative tRNA ligase-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.8e-30
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKEIL APG LGDDRP+++LMGDLIKGRYWQKVAD+RRRKPYSIMLADKNA
Sbjct: 612 IPGCAKSALCKEILNAPGGLGDDRPIHSLMGDLIKGRYWQKVADERRRKPYSIMLADKNA 671

Query: 61  PNEEVWRQVPSFSVA 76
           PNEEVW+Q+ +  ++
Sbjct: 672 PNEEVWKQIENMCLS 686

[Close]

BLAST of Cucsa.207340 vs. TrEMBL
Match: B9SK42_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1399970 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-29
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKE+L APG LGDDRP+++LMGDL+KGRYWQKVAD+RRRKPYSIMLADKNA
Sbjct: 639 IPGCAKSALCKELLNAPGGLGDDRPIHSLMGDLVKGRYWQKVADERRRKPYSIMLADKNA 698

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 699 PNEEVWRQI 707

[Close]

BLAST of Cucsa.207340 vs. TAIR10
Match: AT1G07910.1 (AT1G07910.1 RNAligase)

HSP 1 Score: 124.4 bits (311), Expect = 3.3e-29
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPG AKSALCKE+L APG  GDDRPV+TLMGDL+KG+YW KVAD+RR+KP SIMLADKNA
Sbjct: 695 IPGSAKSALCKELLNAPGGFGDDRPVHTLMGDLVKGKYWPKVADERRKKPQSIMLADKNA 754

Query: 61  PNEEVWRQV 70
           PNE+VWRQ+
Sbjct: 755 PNEDVWRQI 763

[Close]

BLAST of Cucsa.207340 vs. NCBI nr
Match: gi|778658961|ref|XP_004147268.2| (PREDICTED: uncharacterized protein LOC101214899 isoform X1 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA
Sbjct: 788 IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 847

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 848 PNEEVWRQI 856

[Close]

BLAST of Cucsa.207340 vs. NCBI nr
Match: gi|700209655|gb|KGN64751.1| (hypothetical protein Csa_1G087430 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA
Sbjct: 571 IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 630

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 631 PNEEVWRQI 639

[Close]

BLAST of Cucsa.207340 vs. NCBI nr
Match: gi|778658964|ref|XP_011653586.1| (PREDICTED: uncharacterized protein LOC101214899 isoform X2 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA
Sbjct: 739 IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 798

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 799 PNEEVWRQI 807

[Close]

BLAST of Cucsa.207340 vs. NCBI nr
Match: gi|778658967|ref|XP_011653589.1| (PREDICTED: uncharacterized protein LOC101214899 isoform X3 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA
Sbjct: 562 IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 621

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 622 PNEEVWRQI 630

[Close]

BLAST of Cucsa.207340 vs. NCBI nr
Match: gi|659072145|ref|XP_008463612.1| (PREDICTED: uncharacterized protein LOC103501711 isoform X2 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 9.7e-31
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   IPGCAKSALCKEILKAPGALGDDRPVNTLMGDLIKGRYWQKVADDRRRKPYSIMLADKNA 60
           IPGCAKSALC+EIL APGALGDDRPVNTLMGDLIKGRYWQKVAD+RR+KPYSIMLADKNA
Sbjct: 733 IPGCAKSALCREILNAPGALGDDRPVNTLMGDLIKGRYWQKVADERRKKPYSIMLADKNA 792

Query: 61  PNEEVWRQV 70
           PNEEVWRQ+
Sbjct: 793 PNEEVWRQI 801

The following BLAST results are available for this feature:

BLAST of Cucsa.207340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXM1_CUCSA	1.2e-32	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G087430 PE=4 SV=1	[more]
I3VB55_SOLME	2.0e-30	84.00	tRNA ligase OS=Solanum melongena PE=2 SV=1	[more]
W9SCB2_9ROSA	9.8e-30	89.86	Uncharacterized protein OS=Morus notabilis GN=L484_014416 PE=4 SV=1	[more]
A0A0V0IZE4_SOLCH	9.8e-30	81.33	Putative tRNA ligase-like OS=Solanum chacoense PE=4 SV=1	[more]
B9SK42_RICCO	1.3e-29	86.96	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1399970 PE=4 SV=1	[more]

BLAST of Cucsa.207340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07910.1	3.3e-29	79.71	RNAligase	[more]

BLAST of Cucsa.207340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658961\|ref\|XP_004147268.2\|	1.8e-32	98.55	PREDICTED: uncharacterized protein LOC101214899 isoform X1 [Cucumis sativus]	[more]
gi\|700209655\|gb\|KGN64751.1\|	1.8e-32	98.55	hypothetical protein Csa_1G087430 [Cucumis sativus]	[more]
gi\|778658964\|ref\|XP_011653586.1\|	1.8e-32	98.55	PREDICTED: uncharacterized protein LOC101214899 isoform X2 [Cucumis sativus]	[more]
gi\|778658967\|ref\|XP_011653589.1\|	1.8e-32	98.55	PREDICTED: uncharacterized protein LOC101214899 isoform X3 [Cucumis sativus]	[more]
gi\|659072145\|ref\|XP_008463612.1\|	9.7e-31	92.75	PREDICTED: uncharacterized protein LOC103501711 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003972	RNA ligase (ATP) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.207340.1	Cucsa.207340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35460	FAMILY NOT NAMED	coord: 1..69 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.207340	Cla005050	Watermelon (97103) v1	cgywmB407
Cucsa.207340	Csa1G087430	Cucumber (Chinese Long) v2	cgycuB314
Cucsa.207340	MELO3C005030	Melon (DHL92) v3.5.1	cgymeB374
Cucsa.207340	ClCG03G002340	Watermelon (Charleston Gray)	cgywcgB383
Cucsa.207340	CSPI01G12830	Wild cucumber (PI 183967)	cgycpiB327
Cucsa.207340	CmaCh13G001930	Cucurbita maxima (Rimu)	cgycmaB0610
Cucsa.207340	CmoCh13G001940	Cucurbita moschata (Rifu)	cgycmoB0611
Cucsa.207340	Lsi02G014390	Bottle gourd (USVL1VR-Ls)	cgylsiB354
Cucsa.207340	Cp4.1LG20g09130	Cucurbita pepo (Zucchini)	cgycpeB0582
Cucsa.207340	MELO3C005030.2	Melon (DHL92) v3.6.1	cgymedB371
Cucsa.207340	CsaV3_1G013020	Cucumber (Chinese Long) v3	cgycucB332
Cucsa.207340	Cla97C03G053370	Watermelon (97103) v2	cgywmbB386
Cucsa.207340	Bhi08G000289	Wax gourd	cgywgoB434
Cucsa.207340	Carg21069	Silver-seed gourd	carcgyB0818

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.207340	Wax gourd	cgywgoB435
Cucsa.207340	Cucurbita maxima (Rimu)	cgycmaB0611
Cucsa.207340	Cucurbita moschata (Rifu)	cgycmoB0612
Cucsa.207340	Cucurbita pepo (Zucchini)	cgycpeB0583
Cucsa.207340	Silver-seed gourd	carcgyB0511