Cucsa.198930 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.198930
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ATP-dependent helicase/nuclease subunit A isoform 2
Location	scaffold01357 : 1815205 .. 1815940 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCTCTGAATTTGGGAAGATGGTCGGCAGTTCTCGTAAATGGGCTTATATTCGGATCATCACCGGCACCGTTGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGGTAACCCCACTTCTCTTCAATTTCAGATTTCTAATCAACTTGTAGGTTATGTATGGTATGATTGTGGGTTTCTTTTCTTTTCTTTTTTCGTTTTGATTTGCTTTTTGGGGCTGATGCAGGAGAAGATGAAAGAGAGGTTAAAACAATATGAGAACGAACTCAAAAAGAAAGAGCAAATGAAAGAACTTGAAGACTCGCTATAGTGTGAGTGGATCGTACACTTTTCCTATTTGGGTGTTCTGATTATACAGAGCCAAAGTTGAAGTTCGAGGGTTTTCTGCATTGGCTTTAGAAATTGACCTCATAAGAACACTCCAATCATTCCATATCAATTAGGGCACTGGAGTACAGAACTGGATTTGGGAATAAATTAGTGTAGGCTGAAAAGAAAAGAATTGGGTTGCAATTTTGTTTCTCTTTTCTACAATTTATCACTGATTAACAGCATGTGTGTTTTGTTATGTGATTAGTTTATGATTTATTCCTTTGGTTAATGGAAAGCCCTTTAAGTTAACTGTCTTTGTGCTTATGTGATTTTTTATTTTGTATATAGATGTGAACTCCAATTCTTGTATGAGAGCACTATGATTAGGATAATTTATTCGGTG

mRNA sequence

AGAGCTCTGAATTTGGGAAGATGGTCGGCAGTTCTCGTAAATGGGCTTATATTCGGATCATCACCGGCACCGTTGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGGAGAAGATGAAAGAGAGGTTAAAACAATATGAGAACGAACTCAAAAAGAAAGAGCAAATGAAAGAACTTGAAGACTCGCTATAGTGTGAGTGGATCGTACACTTTTCCTATTTGGGTGTTCTGATTATACAGAGCCAAAGTTGAAGTTCGAGGGTTTTCTGCATTGGCTTTAGAAATTGACCTCATAAGAACACTCCAATCATTCCATATCAATTAGGGCACTGGAGTACAGAACTGGATTTGGGAATAAATTAGTGTAGGCTGAAAAGAAAAGAATTGGGTTGCAATTTTGTTTCTCTTTTCTACAATTTATCACTGATTAACAGCATGTGTGTTTTGTTATGTGATTAGTTTATGATTTATTCCTTTGGTTAATGGAAAGCCCTTTAAGTTAACTGTCTTTGTGCTTATGTGATTTTTTATTTTGTATATAGATGTGAACTCCAATTCTTGTATGAGAGCACTATGATTAGGATAATTTATTCGGTG

Coding sequence (CDS)

ATGGTCGGCAGTTCTCGTAAATGGGCTTATATTCGGATCATCACCGGCACCGTTGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGGAGAAGATGAAAGAGAGGTTAAAACAATATGAGAACGAACTCAAAAAGAAAGAGCAAATGAAAGAACTTGAAGACTCGCTATAG

Protein sequence

MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELEDSL*

Homology

[Close]

BLAST of Cucsa.198930 vs. TrEMBL
Match: A0A061G1N6_THECC (ATP-dependent helicase/nuclease subunit A isoform 1 OS=Theobroma cacao GN=TCM_012272 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.1e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1   MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
           M  +S KW Y+RIITGT++GGVLGFYVMHRVEV YKEKMKERL+QYE ELKKKE++ ELE
Sbjct: 56  MAMNSVKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLRQYETELKKKEKLNELE 115

Query: 61  DSL 64
           DS+
Sbjct: 116 DSI 118

[Close]

BLAST of Cucsa.198930 vs. TrEMBL
Match: A0A061FTZ5_THECC (ATP-dependent helicase/nuclease subunit A isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_012272 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.1e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1   MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
           M  +S KW Y+RIITGT++GGVLGFYVMHRVEV YKEKMKERL+QYE ELKKKE++ ELE
Sbjct: 43  MAMNSVKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLRQYETELKKKEKLNELE 102

Query: 61  DSL 64
           DS+
Sbjct: 103 DSI 105

[Close]

BLAST of Cucsa.198930 vs. TrEMBL
Match: B9RE32_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1617490 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-19
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1


Query: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
          M   S KW YIRII+GT++GG+LGFYVMHR EV YKEKMKERLKQYENELKKKE++ +LE
Sbjct: 1  MALDSLKWGYIRIISGTILGGILGFYVMHRAEVSYKEKMKERLKQYENELKKKEKLNQLE 60

Query: 61 DS 63
          DS
Sbjct: 61 DS 62

[Close]

BLAST of Cucsa.198930 vs. TrEMBL
Match: B9I0G1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14370g PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-19
Identity = 45/63 (71.43%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
          M  +S+KW Y+RIITGT++GGVLGFYVMHRVEV YKEKMKERL++YE EL+KKE++K+LE
Sbjct: 1  MALNSQKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLREYEKELQKKEELKQLE 60

Query: 61 DSL 64
          +S+
Sbjct: 61 ESM 63

[Close]

BLAST of Cucsa.198930 vs. TrEMBL
Match: A0A067JBI8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05862 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-19
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
          MV  + KW YIRIITGT++GG+LGFYVMHR EVGYKEKM ERLK+YE+ELKKKE++ +LE
Sbjct: 1  MVLDAVKWGYIRIITGTILGGILGFYVMHRTEVGYKEKMNERLKKYESELKKKEKLDQLE 60

Query: 61 DSL 64
          DS+
Sbjct: 61 DSI 63

[Close]

BLAST of Cucsa.198930 vs. TAIR10
Match: AT3G18510.1 (AT3G18510.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-14
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKEL 60
          M  SS  W Y RII GT++GG LGFYVMHR+EV YK +M+E L QYE +++K+++ + L
Sbjct: 1  MALSSMTWGYARIIAGTLLGGALGFYVMHRIEVSYKMRMEEALNQYEKDMQKRQEEENL 59

[Close]

BLAST of Cucsa.198930 vs. NCBI nr
Match: gi|449440925|ref|XP_004138234.1| (PREDICTED: uncharacterized protein LOC101217575 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
          MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of Cucsa.198930 vs. NCBI nr
Match: gi|659106543|ref|XP_008453375.1| (PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-25
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
          MVGSSRKWAY RII GT+VGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKE+MKELE
Sbjct: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90

Query: 61 DSL 64
          DSL
Sbjct: 91 DSL 93

[Close]

BLAST of Cucsa.198930 vs. NCBI nr
Match: gi|590664273|ref|XP_007036454.1| (ATP-dependent helicase/nuclease subunit A isoform 2, partial [Theobroma cacao])

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1   MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
           M  +S KW Y+RIITGT++GGVLGFYVMHRVEV YKEKMKERL+QYE ELKKKE++ ELE
Sbjct: 43  MAMNSVKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLRQYETELKKKEKLNELE 102

Query: 61  DSL 64
           DS+
Sbjct: 103 DSI 105

[Close]

BLAST of Cucsa.198930 vs. NCBI nr
Match: gi|590664270|ref|XP_007036453.1| (ATP-dependent helicase/nuclease subunit A isoform 1 [Theobroma cacao])

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1   MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
           M  +S KW Y+RIITGT++GGVLGFYVMHRVEV YKEKMKERL+QYE ELKKKE++ ELE
Sbjct: 56  MAMNSVKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLRQYETELKKKEKLNELE 115

Query: 61  DSL 64
           DS+
Sbjct: 116 DSI 118

[Close]

BLAST of Cucsa.198930 vs. NCBI nr
Match: gi|224115330|ref|XP_002317005.1| (hypothetical protein POPTR_0011s14370g [Populus trichocarpa])

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-19
Identity = 45/63 (71.43%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60
          M  +S+KW Y+RIITGT++GGVLGFYVMHRVEV YKEKMKERL++YE EL+KKE++K+LE
Sbjct: 1  MALNSQKWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLREYEKELQKKEELKQLE 60

Query: 61 DSL 64
          +S+
Sbjct: 61 ESM 63

The following BLAST results are available for this feature:

BLAST of Cucsa.198930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061G1N6_THECC	4.1e-20	76.19	ATP-dependent helicase/nuclease subunit A isoform 1 OS=Theobroma cacao GN=TCM_01...	[more]
A0A061FTZ5_THECC	4.1e-20	76.19	ATP-dependent helicase/nuclease subunit A isoform 2 (Fragment) OS=Theobroma caca...	[more]
B9RE32_RICCO	1.6e-19	75.81	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1617490 PE=4 SV=1	[more]
B9I0G1_POPTR	1.6e-19	71.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14370g PE=4 SV=1	[more]
A0A067JBI8_JATCU	3.5e-19	73.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05862 PE=4 SV=1	[more]

BLAST of Cucsa.198930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18510.1	3.0e-14	54.24	unknown protein	[more]

BLAST of Cucsa.198930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440925\|ref\|XP_004138234.1\|	3.8e-27	100.00	PREDICTED: uncharacterized protein LOC101217575 [Cucumis sativus]	[more]
gi\|659106543\|ref\|XP_008453375.1\|	2.1e-25	93.65	PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo]	[more]
gi\|590664273\|ref\|XP_007036454.1\|	5.9e-20	76.19	ATP-dependent helicase/nuclease subunit A isoform 2, partial [Theobroma cacao]	[more]
gi\|590664270\|ref\|XP_007036453.1\|	5.9e-20	76.19	ATP-dependent helicase/nuclease subunit A isoform 1 [Theobroma cacao]	[more]
gi\|224115330\|ref\|XP_002317005.1\|	2.2e-19	71.43	hypothetical protein POPTR_0011s14370g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.198930.1	Cucsa.198930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 36..63 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.198930	Cla018987	Watermelon (97103) v1	cgywmB390
Cucsa.198930	Csa1G021950	Cucumber (Chinese Long) v2	cgycuB299
Cucsa.198930	MELO3C017293	Melon (DHL92) v3.5.1	cgymeB364
Cucsa.198930	ClCG06G014960	Watermelon (Charleston Gray)	cgywcgB368
Cucsa.198930	CSPI01G03650	Wild cucumber (PI 183967)	cgycpiB310
Cucsa.198930	CmaCh10G002440	Cucurbita maxima (Rimu)	cgycmaB0575
Cucsa.198930	CmoCh11G002700	Cucurbita moschata (Rifu)	cgycmoB0578
Cucsa.198930	CmoCh10G002630	Cucurbita moschata (Rifu)	cgycmoB0577
Cucsa.198930	Cp4.1LG18g07570	Cucurbita pepo (Zucchini)	cgycpeB0555
Cucsa.198930	MELO3C017293.2	Melon (DHL92) v3.6.1	cgymedB359
Cucsa.198930	CsaV3_1G003680	Cucumber (Chinese Long) v3	cgycucB314
Cucsa.198930	Carg17912	Silver-seed gourd	carcgyB0532
Cucsa.198930	Carg09149	Silver-seed gourd	carcgyB0673

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.198930	Cucumber (Gy14) v1	cgycgyB114
Cucsa.198930	Cucurbita maxima (Rimu)	cgycmaB0577
Cucsa.198930	Cucurbita maxima (Rimu)	cgycmaB0587
Cucsa.198930	Cucurbita maxima (Rimu)	cgycmaB0590
Cucsa.198930	Cucurbita moschata (Rifu)	cgycmoB0589
Cucsa.198930	Wild cucumber (PI 183967)	cgycpiB316
Cucsa.198930	Cucumber (Chinese Long) v2	cgycuB304
Cucsa.198930	Melon (DHL92) v3.5.1	cgymeB358
Cucsa.198930	Watermelon (Charleston Gray)	cgywcgB365
Cucsa.198930	Watermelon (97103) v1	cgywmB383
Cucsa.198930	Watermelon (97103) v1	cgywmB388
Cucsa.198930	Cucurbita pepo (Zucchini)	cgycpeB0564
Cucsa.198930	Cucurbita pepo (Zucchini)	cgycpeB0558
Cucsa.198930	Bottle gourd (USVL1VR-Ls)	cgylsiB334
Cucsa.198930	Bottle gourd (USVL1VR-Ls)	cgylsiB340
Cucsa.198930	Bottle gourd (USVL1VR-Ls)	cgylsiB342
Cucsa.198930	Melon (DHL92) v3.6.1	cgymedB353
Cucsa.198930	Silver-seed gourd	carcgyB0455
Cucsa.198930	Silver-seed gourd	carcgyB0590
Cucsa.198930	Silver-seed gourd	carcgyB1158
Cucsa.198930	Cucumber (Chinese Long) v3	cgycucB315
Cucsa.198930	Cucumber (Chinese Long) v3	cgycucB320
Cucsa.198930	Watermelon (97103) v2	cgywmbB365
Cucsa.198930	Watermelon (97103) v2	cgywmbB367
Cucsa.198930	Watermelon (97103) v2	cgywmbB370
Cucsa.198930	Wax gourd	cgywgoB407
Cucsa.198930	Wax gourd	cgywgoB413