Cucsa.198900 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.198900
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description40S ribosomal protein S28
Locationscaffold01357 : 1804080 .. 1805333 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCCCCCTTCCATTTGTGTTGCCGGCGGCGTGTCTTCAAATTCTACTGAGTTCTCTCCGCCCTCATTCTTTCTCCCTCGTTTAAGGTTCGTATCGACGTGCTTCTTCGATCCATGGATTTTTTGTGATTTTCTTTGTTTGTTCTGTTCCTTATCCATAGCATTGGCAGCACTTCATATTTGTATTCTCTGCGAGAAAGCTGACAAATGATTGCATTTATTCTTCAGTTTTGCTTTTGTTTGCCTTCGGTGATTAGTGTTATTGTCTTTTGGTTGTTGGTTATATGATCTTGTTTCATGATAGACAGATGATTATTGGGATTGAGATTCGAGATATTTTGATTTGCAGTTCTTCGTTTTGTTTATGAGTTGGAAACCTTGAAATGTTATGCAGACATTTTCGTTCTCCCTCCTTCTCTTGGTTCAAAATATAAGTAATTAGAATTGTAACTCGTATATGCTTTCTGAAAGTTGGTTTCTTTAACAAATCTCTAGTTTCATAGAATATTATGCACTGATATACGTAAGTTCTTTGTTTCCCACTAGTTGTTCCTTGAACTTATTATGTTGTTCAAATTTAGAAGTGGAGCTGTATAGTAAAGGAAAAGATTCTTGGATTGAATAAGATTTAAGTTATTGGTGGGTTCGTGCAGGAATGGAATCCCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACTCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAGATCAAACCCCCACTTCACCAATTTGCAGTTGCTGAATGTTATGTTTATCCCCTTTTTAGTTTTGTCTTCAAAATAGAATGGCTCGTATCATTTTCACCTCTTTTATGTGTGGCTTTAGTGATATTTTGGTTCTAAGCCAGAATACCTGAACTGAATGAGTACTTTAATTGAGTTTTGAAACCATCTATTTCAAAGTTTTGTGGCTGTTTGCCAACTGCTCAATATTTCTTTTGGAATTCTTAGCATTTAGTTGTATGCTTGCTTTCTTGTTTTGAATTGTTTGATGGTGTGATTTGAAGTGATTTTAAATAGGATTTATTTATTTGAGTATTTGTACTGTTGTGTGCTCTCCTAAGGTTGCATTTGCTTTTTTTATTTTTTATATTTATTTTGAGATGAAGA

mRNA sequence

CCCCCCCCTTCCATTTGTGTTGCCGGCGGCGTGTCTTCAAATTCTACTGAGTTCTCTCCGCCCTCATTCTTTCTCCCTCGTTTAAGGAATGGAATCCCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACTCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAGATCAAACCCCCACTTCACCAATTTGCAGTTGCTGAATGTTATGTTTATCCCCTTTTTAGTTTTGTCTTCAAAATAGAATGGCTCGTATCATTTTCACCTCTTTTATGTGTGGCTTTAGTGATATTTTGGTTCTAAGCCAGAATACCTGAACTGAATGAGTACTTTAATTGAGTTTTGAAACCATCTATTTCAAAGTTTTGTGGCTGTTTGCCAACTGCTCAATATTTCTTTTGGAATTCTTAGCATTTAGTTGTATGCTTGCTTTCTTGTTTTGAATTGTTTGATGGTGTGATTTGAAGTGATTTTAAATAGGATTTATTTATTTGAGTATTTGTACTGTTGTGTGCTCTCCTAAGGTTGCATTTGCtttttttattttttatatttattttGAGATGAAGA

Coding sequence (CDS)

ATGGAATCCCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACTCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAG

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR*
Homology
[Close]
BLAST of Cucsa.198900 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.8e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Cucsa.198900 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Cucsa.198900 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]
BLAST of Cucsa.198900 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]
BLAST of Cucsa.198900 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.9e-27
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 22 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 81

Query: 61 ARRLR 66
          ARRLR
Sbjct: 82 ARRLR 86

[Close]
BLAST of Cucsa.198900 vs. TrEMBL
Match: W9SDZ8_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. TrEMBL
Match: Q2HWC2_MEDTR (40S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Cucsa.198900 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Cucsa.198900 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Cucsa.198900 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 211 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 270

Query: 61  ARRLR 66
           ARRLR
Sbjct: 271 ARRLR 275

[Close]
BLAST of Cucsa.198900 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Cucsa.198900 vs. NCBI nr
Match: gi|703087605|ref|XP_010093316.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 22 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 81

Query: 61 ARRLR 66
          ARRLR
Sbjct: 82 ARRLR 86

The following BLAST results are available for this feature:
BLAST of Cucsa.198900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS28_MAIZE2.8e-2590.7740S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1[more]
RS281_ARATH4.8e-2592.3140S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1[more]
RS282_ARATH1.8e-2489.2340S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1[more]
RS28_ICTPU3.5e-2080.3340S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1[more]
RS28_DANRE3.5e-2080.3340S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1[more]
BLAST of Cucsa.198900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPR2_CUCSA3.6e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1[more]
A0A061EXX4_THECC7.9e-2798.46Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3... [more]
W9R147_9ROSA1.4e-2696.9240S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1[more]
W9SDZ8_9ROSA1.4e-2696.9240S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1[more]
Q2HWC2_MEDTR1.4e-2698.4640S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2[more]
BLAST of Cucsa.198900 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10090.12.7e-2692.31 Nucleic acid-binding, OB-fold-like protein[more]
AT5G03850.12.7e-2692.31 Nucleic acid-binding, OB-fold-like protein[more]
AT5G64140.11.0e-2589.23 ribosomal protein S28[more]
BLAST of Cucsa.198900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440915|ref|XP_004138229.1|5.1e-27100.00PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus][more]
gi|590637502|ref|XP_007029134.1|1.1e-2698.46Nucleic acid-binding, OB-fold-like protein [Theobroma cacao][more]
gi|703110452|ref|XP_010099593.1|1.9e-2696.92Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis][more]
gi|502091073|ref|XP_004489433.1|1.9e-2698.46PREDICTED: 40S ribosomal protein S28 [Cicer arietinum][more]
gi|703087605|ref|XP_010093316.1|1.9e-2696.9240S ribosomal protein S28 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000289Ribosomal_S28e
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.198900.1Cucsa.198900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 1..46
score: 7.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 1..65
score: 21
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 1..65
score: 1.9
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 4..64
score: 3.7
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 1..65
score: 2.7
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..65
score: 9.42

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.198900Cla018989Watermelon (97103) v1cgywmB390
Cucsa.198900Csa1G021920Cucumber (Chinese Long) v2cgycuB299
Cucsa.198900MELO3C017291Melon (DHL92) v3.5.1cgymeB364
Cucsa.198900ClCG06G014990Watermelon (Charleston Gray)cgywcgB368
Cucsa.198900CSPI01G03620Wild cucumber (PI 183967)cgycpiB310
Cucsa.198900CmaCh10G002460Cucurbita maxima (Rimu)cgycmaB0575
Cucsa.198900CmaCh11G002600Cucurbita maxima (Rimu)cgycmaB0577
Cucsa.198900CmoCh11G002660Cucurbita moschata (Rifu)cgycmoB0578
Cucsa.198900CmoCh10G002660Cucurbita moschata (Rifu)cgycmoB0577
Cucsa.198900Lsi06G013460Bottle gourd (USVL1VR-Ls)cgylsiB342
Cucsa.198900Cp4.1LG18g07540Cucurbita pepo (Zucchini)cgycpeB0555
Cucsa.198900Cp4.1LG04g14200Cucurbita pepo (Zucchini)cgycpeB0564
Cucsa.198900MELO3C017291.2Melon (DHL92) v3.6.1cgymedB359
Cucsa.198900CsaV3_1G003660Cucumber (Chinese Long) v3cgycucB314
Cucsa.198900Cla97C06G124460Watermelon (97103) v2cgywmbB370
Cucsa.198900Bhi01G002720Wax gourdcgywgoB407
Cucsa.198900Carg17910Silver-seed gourdcarcgyB0532
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.198900Wax gourdcgywgoB413
Cucsa.198900Cucumber (Gy14) v1cgycgyB114
Cucsa.198900Cucurbita maxima (Rimu)cgycmaB0587
Cucsa.198900Cucurbita maxima (Rimu)cgycmaB0590
Cucsa.198900Cucurbita moschata (Rifu)cgycmoB0589
Cucsa.198900Wild cucumber (PI 183967)cgycpiB316
Cucsa.198900Cucumber (Chinese Long) v2cgycuB304
Cucsa.198900Melon (DHL92) v3.5.1cgymeB358
Cucsa.198900Watermelon (Charleston Gray)cgywcgB365
Cucsa.198900Watermelon (97103) v1cgywmB383
Cucsa.198900Watermelon (97103) v1cgywmB388
Cucsa.198900Cucurbita pepo (Zucchini)cgycpeB0558
Cucsa.198900Bottle gourd (USVL1VR-Ls)cgylsiB334
Cucsa.198900Bottle gourd (USVL1VR-Ls)cgylsiB340
Cucsa.198900Melon (DHL92) v3.6.1cgymedB353
Cucsa.198900Silver-seed gourdcarcgyB0455
Cucsa.198900Silver-seed gourdcarcgyB0590
Cucsa.198900Silver-seed gourdcarcgyB0673
Cucsa.198900Silver-seed gourdcarcgyB1158
Cucsa.198900Cucumber (Chinese Long) v3cgycucB315
Cucsa.198900Cucumber (Chinese Long) v3cgycucB320
Cucsa.198900Watermelon (97103) v2cgywmbB365
Cucsa.198900Watermelon (97103) v2cgywmbB367