Cucsa.196450 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.196450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BnaCnng59370D protein
Location	scaffold01357 : 117211 .. 117459 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCGGTGGCCGTAGTGGCGTTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCATTCGCTGGAAACCGACGGCGAGTTCTGGTCAAAGATGGGAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCTCCGTAATCGTTAAAGAAAGAGGTCTTCTTGCTGTTGCTTTCGCCGCCCTCTTCAGCTTCCTCGCT

mRNA sequence

ATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCGGTGGCCGTAGTGGCGTTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCATTCGCTGGAAACCGACGGCGAGTTCTGGTCAAAGATGGGAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCTCCGTAATCGTTAAAGAAAGAGGTCTTCTTGCTGTTGCTTTCGCCGCCCTCTTCAGCTTCCTCGCT

Coding sequence (CDS)

ATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCGGTGGCCGTAGTGGCGTTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCATTCGCTGGAAACCGACGGCGAGTTCTGGTCAAAGATGGGAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCTCCGTAATCGTTAAAGAAAGAGGTCTTCTTGCTGTTGCTTTCGCCGCCCTCTTCAGCTTCCTCGCT

Protein sequence

MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLA

Homology

[Close]

BLAST of Cucsa.196450 vs. TrEMBL
Match: A0A0A0LRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003500 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-35
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1   MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 60
           MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL
Sbjct: 31  MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 90

Query: 61  ASVIVKERGLLAVAFAALFSFLA 84
           ASVIVKERGLLAVAFAALFSFLA
Sbjct: 91  ASVIVKERGLLAVAFAALFSFLA 113

[Close]

BLAST of Cucsa.196450 vs. TrEMBL
Match: A0A0A0LNT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003480 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.5e-35
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1   MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 60
           MGRWLPILGLLAVAVV LMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL
Sbjct: 26  MGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 85

Query: 61  ASVIVKERGLLAVAFAALFSFLA 84
           ASVIVKERGLLAVAFAALFSFLA
Sbjct: 86  ASVIVKERGLLAVAFAALFSFLA 108

[Close]

BLAST of Cucsa.196450 vs. TrEMBL
Match: M5VW42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026311mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 5   LPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVI 64
           LP+LG L V  + ++AAR TM+AWITVLVLL FAGNRRRVLV+ G+ ITADVA+YL  VI
Sbjct: 37  LPVLGALMVLALVVIAARTTMMAWITVLVLLTFAGNRRRVLVRRGKLITADVAIYLFQVI 96

Query: 65  VKERGLLAVAFAALFSFLA 84
           +KERGLLAVA A + S +A
Sbjct: 97  MKERGLLAVACATVLSLMA 115

[Close]

BLAST of Cucsa.196450 vs. TrEMBL
Match: A0A0J8CFD2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118220 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-16
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1


Query: 5   LPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVI 64
           L + GL  +++V ++ AR TMVAWITVLVLLAF+G RRRVLV DGRKIT DVAM+L  V+
Sbjct: 47  LALAGLSLLSIVLIVVARTTMVAWITVLVLLAFSGKRRRVLVHDGRKITCDVAMHLIKVM 106

Query: 65  VKERGLLAVAFAALFSFLA 84
           V ER  L+V  AA+ S LA
Sbjct: 107 VNERQFLSVIGAAVLSLLA 125

[Close]

BLAST of Cucsa.196450 vs. TrEMBL
Match: A0A0K9R4B8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113590 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 5   LPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVI 64
           L ++GL  V++  ++ AR TMVAWITVLV+LAF+G RRRVLV DGRKIT DVAM L  V+
Sbjct: 45  LTVVGLSIVSICLVVVARTTMVAWITVLVVLAFSGTRRRVLVHDGRKITVDVAMNLIKVM 104

Query: 65  VKERGLLAVAFAALFSFLA 84
            KER  L V  AA+ S LA
Sbjct: 105 FKERQFLTVVCAAVVSLLA 123

[Close]

BLAST of Cucsa.196450 vs. TAIR10
Match: AT5G50175.1 (AT5G50175.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-13
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 15  VVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKE 68
           V+ + AARATMVAWITVLVLLAF+G RRRVL + G+ ITADVAM L  V+++E
Sbjct: 55  VLLVAAARATMVAWITVLVLLAFSGTRRRVLARRGKTITADVAMSLFRVLIRE 107

[Close]

BLAST of Cucsa.196450 vs. TAIR10
Match: AT4G03600.1 (AT4G03600.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-10
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 7   ILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 66
           + G +++     +A  A MV WI+V+VLLAF G  RRVLV +GRKIT +V  ++  V++K
Sbjct: 78  MFGAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEGRKITREVVGFVFKVLLK 137

Query: 67  ERGLLAVAFAALFSFL 83
           E  ++A   A L  FL
Sbjct: 138 EGNVVAAFCAVLAYFL 153

[Close]

BLAST of Cucsa.196450 vs. TAIR10
Match: AT1G03730.1 (AT1G03730.1 unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-10
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 7   ILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 66
           + G +++   A +A  A MV WI+V+VLLAF G  RRVLV + RKIT +V  ++  V++K
Sbjct: 83  VFGAMSMVAAAAVAVPAVMVIWISVVVLLAFFGKSRRVLVVEARKITREVFGFVFKVLLK 142

Query: 67  ERGLLAVAFAALFSFL 83
           E   +A   A L  F+
Sbjct: 143 EGNAVAAVCAVLGYFI 158

[Close]

BLAST of Cucsa.196450 vs. TAIR10
Match: AT4G28330.1 (AT4G28330.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 28/76 (36.84%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 7   ILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 66
           + G+L++A    +A  A +V WI+V+V +AFAG  R+ +V +GRK+T ++A ++  V++K
Sbjct: 74  VFGVLSMAAALFIAVPAIVVIWISVVVTMAFAGKSRKRVVIEGRKVTKEIAGFVFRVLLK 133

Query: 67  ERGLLAVAFAALFSFL 83
           E   +A+  A L  F+
Sbjct: 134 EGNFVALLCALLAYFV 149

[Close]

BLAST of Cucsa.196450 vs. TAIR10
Match: AT4G28340.1 (AT4G28340.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 26/76 (34.21%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 7   ILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 66
           + G+L++A    +A  A +V WI+V+V +AF    R+ +V +GRK+T ++A Y+  V++K
Sbjct: 74  VFGVLSMAAALFIAVPAIVVIWISVVVTIAFPVKSRKKVVIEGRKVTKEIAGYVFKVLLK 133

Query: 67  ERGLLAVAFAALFSFL 83
           E   +A+  A +  F+
Sbjct: 134 EGNFVALLCAVIAYFV 149

[Close]

BLAST of Cucsa.196450 vs. NCBI nr
Match: gi|700208436|gb|KGN63532.1| (hypothetical protein Csa_1G003500 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-35
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1   MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 60
           MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL
Sbjct: 31  MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 90

Query: 61  ASVIVKERGLLAVAFAALFSFLA 84
           ASVIVKERGLLAVAFAALFSFLA
Sbjct: 91  ASVIVKERGLLAVAFAALFSFLA 113

[Close]

BLAST of Cucsa.196450 vs. NCBI nr
Match: gi|700208434|gb|KGN63530.1| (hypothetical protein Csa_1G003480 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.4e-35
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1   MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 60
           MGRWLPILGLLAVAVV LMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL
Sbjct: 26  MGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 85

Query: 61  ASVIVKERGLLAVAFAALFSFLA 84
           ASVIVKERGLLAVAFAALFSFLA
Sbjct: 86  ASVIVKERGLLAVAFAALFSFLA 108

[Close]

BLAST of Cucsa.196450 vs. NCBI nr
Match: gi|659129057|ref|XP_008464506.1| (PREDICTED: uncharacterized protein LOC103502369 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1   MGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYL 60
           MGRWLPILGLLAVA VALMAARATMVAWITVLVLLAFAGNRRRVLVK GRKITADVAMYL
Sbjct: 37  MGRWLPILGLLAVAGVALMAARATMVAWITVLVLLAFAGNRRRVLVKHGRKITADVAMYL 96

Query: 61  ASVIVKERGLLAVAFAALFSFLA 84
           ASV+VKERGLLAVAFAALFSF+A
Sbjct: 97  ASVMVKERGLLAVAFAALFSFVA 119

[Close]

BLAST of Cucsa.196450 vs. NCBI nr
Match: gi|645264763|ref|XP_008237833.1| (PREDICTED: uncharacterized protein LOC103336555 [Prunus mume])

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 5   LPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVI 64
           LP+LG L V  + ++AARATM+AWITVLVLL FAGN RRVLV+ G+ ITADVA+YL  VI
Sbjct: 40  LPVLGALMVLALVVIAARATMMAWITVLVLLTFAGNHRRVLVRRGKLITADVAIYLFRVI 99

Query: 65  VKERGLLAVAFAALFSFLA 84
           +KERGLLAVA A + S +A
Sbjct: 100 IKERGLLAVACATILSLMA 118

[Close]

BLAST of Cucsa.196450 vs. NCBI nr
Match: gi|595792421|ref|XP_007199959.1| (hypothetical protein PRUPE_ppa026311mg [Prunus persica])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 5   LPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVI 64
           LP+LG L V  + ++AAR TM+AWITVLVLL FAGNRRRVLV+ G+ ITADVA+YL  VI
Sbjct: 37  LPVLGALMVLALVVIAARTTMMAWITVLVLLTFAGNRRRVLVRRGKLITADVAIYLFQVI 96

Query: 65  VKERGLLAVAFAALFSFLA 84
           +KERGLLAVA A + S +A
Sbjct: 97  MKERGLLAVACATVLSLMA 115

The following BLAST results are available for this feature:

BLAST of Cucsa.196450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRZ2_CUCSA	1.5e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003500 PE=4 SV=1	[more]
A0A0A0LNT4_CUCSA	4.5e-35	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003480 PE=4 SV=1	[more]
M5VW42_PRUPE	2.0e-19	67.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026311mg PE=4 SV=1	[more]
A0A0J8CFD2_BETVU	1.6e-16	62.03	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118220 PE=4 S...	[more]
A0A0K9R4B8_SPIOL	1.0e-15	60.76	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113590 PE=4 SV=1	[more]

BLAST of Cucsa.196450 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50175.1	3.3e-13	67.92	unknown protein	[more]
AT4G03600.1	1.2e-10	43.42	unknown protein	[more]
AT1G03730.1	3.4e-10	42.11	unknown protein	[more]
AT4G28330.1	2.2e-09	36.84	unknown protein	[more]
AT4G28340.1	2.4e-08	34.21	unknown protein	[more]

BLAST of Cucsa.196450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208436\|gb\|KGN63532.1\|	2.2e-35	100.00	hypothetical protein Csa_1G003500 [Cucumis sativus]	[more]
gi\|700208434\|gb\|KGN63530.1\|	6.4e-35	98.80	hypothetical protein Csa_1G003480 [Cucumis sativus]	[more]
gi\|659129057\|ref\|XP_008464506.1\|	4.6e-33	95.18	PREDICTED: uncharacterized protein LOC103502369 [Cucumis melo]	[more]
gi\|645264763\|ref\|XP_008237833.1\|	2.2e-19	67.09	PREDICTED: uncharacterized protein LOC103336555 [Prunus mume]	[more]
gi\|595792421\|ref\|XP_007199959.1\|	2.9e-19	67.09	hypothetical protein PRUPE_ppa026311mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.196450.1	Cucsa.196450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34656	FAMILY NOT NAMED	coord: 7..83 score: 1.9
None	No IPR available	PANTHER	PTHR34656:SF2	SUBFAMILY NOT NAMED	coord: 7..83 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.196450	Silver-seed gourd	carcgyB0423
Cucsa.196450	Silver-seed gourd	carcgyB1162
Cucsa.196450	Cucumber (Chinese Long) v3	cgycucB314
Cucsa.196450	Watermelon (97103) v2	cgywmbB369
Cucsa.196450	Watermelon (97103) v2	cgywmbB370
Cucsa.196450	Watermelon (97103) v2	cgywmbB371
Cucsa.196450	Wax gourd	cgywgoB405
Cucsa.196450	Wax gourd	cgywgoB415
Cucsa.196450	Wax gourd	cgywgoB421
Cucsa.196450	Cucurbita maxima (Rimu)	cgycmaB0573
Cucsa.196450	Cucurbita maxima (Rimu)	cgycmaB0576
Cucsa.196450	Cucurbita maxima (Rimu)	cgycmaB0581
Cucsa.196450	Cucurbita moschata (Rifu)	cgycmoB0575
Cucsa.196450	Cucurbita moschata (Rifu)	cgycmoB0578
Cucsa.196450	Cucurbita moschata (Rifu)	cgycmoB0581
Cucsa.196450	Wild cucumber (PI 183967)	cgycpiB310
Cucsa.196450	Wild cucumber (PI 183967)	cgycpiB317
Cucsa.196450	Cucumber (Chinese Long) v2	cgycuB299
Cucsa.196450	Melon (DHL92) v3.5.1	cgymeB364
Cucsa.196450	Watermelon (Charleston Gray)	cgywcgB357
Cucsa.196450	Watermelon (Charleston Gray)	cgywcgB367
Cucsa.196450	Watermelon (Charleston Gray)	cgywcgB368
Cucsa.196450	Watermelon (Charleston Gray)	cgywcgB369
Cucsa.196450	Watermelon (97103) v1	cgywmB379
Cucsa.196450	Watermelon (97103) v1	cgywmB390
Cucsa.196450	Cucurbita pepo (Zucchini)	cgycpeB0563
Cucsa.196450	Cucurbita pepo (Zucchini)	cgycpeB0564
Cucsa.196450	Cucurbita pepo (Zucchini)	cgycpeB0556
Cucsa.196450	Bottle gourd (USVL1VR-Ls)	cgylsiB342
Cucsa.196450	Melon (DHL92) v3.6.1	cgymedB359