Cucsa.194290 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.194290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ergosterol biosynthetic protein 28
Location	scaffold01337 : 638137 .. 638269 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTATGCATTCAACCATGAGAATAAGCCCATTTATTTGACGACATTTTTGTCATTCATCTATGCTTTAGGGCATTTCTTAACTGAATACTTGATATATCATACCATGTCCCATTGCAAATATGATGAGTGA

mRNA sequence

TCTCTATGCATTCAACCATGAGAATAAGCCCATTTATTTGACGACATTTTTGTCATTCATCTATGCTTTAGGGCATTTCTTAACTGAATACTTGATATATCATACCATGTCCCATTGCAAATATGATGAGTGA

Coding sequence (CDS)

TCTCTATGCATTCAACCATGAGAATAAGCCCATTTATTTGACGACATTTTTGTCATTCATCTATGCTTTAGGGCATTTCTTAACTGAATACTTGATATATCATACCATGTCCCATTGCAAATATGATGAGTGA

Protein sequence

LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMSHCKYDE*

Homology

[Close]

BLAST of Cucsa.194290 vs. Swiss-Prot
Match: ERG28_ARATH (Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-10
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1  LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          L AFN ENKP+YL TFLSFIYALGHFLTEYL Y TM+
Sbjct: 60 LCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMT 96

[Close]

BLAST of Cucsa.194290 vs. TrEMBL
Match: A0A0A0LGZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G894520 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-10
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1  LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          L AFN ENKPIYL TFLSFIYALGHFLTEYLIYHTMS
Sbjct: 60 LCAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMS 96

[Close]

BLAST of Cucsa.194290 vs. TrEMBL
Match: A0A0D3HX27_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.7e-10
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
           L AFN ENKP+YL TFLSFIYALGHFLTEYLIYHTM+
Sbjct: 66  LCAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMA 102

[Close]

BLAST of Cucsa.194290 vs. TrEMBL
Match: M5VQ76_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013304mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1  LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          L AFN ENKP+YL TFLSF+YALGHFLTEYLIYHTM+
Sbjct: 60 LCAFNLENKPLYLATFLSFVYALGHFLTEYLIYHTMA 96

[Close]

BLAST of Cucsa.194290 vs. TrEMBL
Match: W5AP36_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
           L AFN ENKP+Y+ TFLSFIYALGHFLTEYLIYHTM+
Sbjct: 69  LCAFNLENKPLYIATFLSFIYALGHFLTEYLIYHTMA 105

[Close]

BLAST of Cucsa.194290 vs. TrEMBL
Match: F2CPZ8_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
           L AFN ENKP+Y+ TFLSFIYALGHFLTEYLIYHTM+
Sbjct: 69  LCAFNLENKPLYIATFLSFIYALGHFLTEYLIYHTMA 105

[Close]

BLAST of Cucsa.194290 vs. TAIR10
Match: AT1G10030.1 (AT1G10030.1 homolog of yeast ergosterol28)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-12
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1  LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          L AFN ENKP+YL TFLSFIYALGHFLTEYL Y TM+
Sbjct: 60 LCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMT 96

[Close]

BLAST of Cucsa.194290 vs. NCBI nr
Match: gi|449436908|ref|XP_004136234.1| (PREDICTED: ergosterol biosynthetic protein 28 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-10
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1  LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          L AFN ENKPIYL TFLSFIYALGHFLTEYLIYHTMS
Sbjct: 60 LCAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMS 96

[Close]

BLAST of Cucsa.194290 vs. NCBI nr
Match: gi|659132238|ref|XP_008466094.1| (PREDICTED: ergosterol biosynthetic protein 28 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-10
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1  LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          L AFN ENKPIYL TFLSFIYALGHFLTEYLIYHTMS
Sbjct: 60 LCAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMS 96

[Close]

BLAST of Cucsa.194290 vs. NCBI nr
Match: gi|595801980|ref|XP_007201912.1| (hypothetical protein PRUPE_ppa013304mg [Prunus persica])

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1  LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          L AFN ENKP+YL TFLSF+YALGHFLTEYLIYHTM+
Sbjct: 60 LCAFNLENKPLYLATFLSFVYALGHFLTEYLIYHTMA 96

[Close]

BLAST of Cucsa.194290 vs. NCBI nr
Match: gi|326490511|dbj|BAJ84919.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   LYAFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
           L AFN ENKP+Y+ TFLSFIYALGHFLTEYLIYHTM+
Sbjct: 69  LCAFNLENKPLYIATFLSFIYALGHFLTEYLIYHTMA 105

[Close]

BLAST of Cucsa.194290 vs. NCBI nr
Match: gi|645261309|ref|XP_008236232.1| (PREDICTED: ergosterol biosynthetic protein 28 [Prunus mume])

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-09
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1


Query: 3  AFNHENKPIYLTTFLSFIYALGHFLTEYLIYHTMS 38
          AFN ENKP+YL TFLSF+YALGHFLTEYLIYHTM+
Sbjct: 62 AFNLENKPLYLATFLSFVYALGHFLTEYLIYHTMA 96

The following BLAST results are available for this feature:

BLAST of Cucsa.194290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERG28_ARATH	1.7e-10	81.08	Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=...	[more]

BLAST of Cucsa.194290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGZ9_CUCSA	2.0e-10	91.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G894520 PE=4 SV=1	[more]
A0A0D3HX27_9ORYZ	7.7e-10	86.49	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]
M5VQ76_PRUPE	1.0e-09	83.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013304mg PE=4 SV=1	[more]
W5AP36_WHEAT	1.3e-09	83.78	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
F2CPZ8_HORVD	1.3e-09	83.78	Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1	[more]

BLAST of Cucsa.194290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10030.1	9.6e-12	81.08	homolog of yeast ergosterol28	[more]

BLAST of Cucsa.194290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436908\|ref\|XP_004136234.1\|	2.9e-10	91.89	PREDICTED: ergosterol biosynthetic protein 28 [Cucumis sativus]	[more]
gi\|659132238\|ref\|XP_008466094.1\|	2.9e-10	91.89	PREDICTED: ergosterol biosynthetic protein 28 [Cucumis melo]	[more]
gi\|595801980\|ref\|XP_007201912.1\|	1.4e-09	83.78	hypothetical protein PRUPE_ppa013304mg [Prunus persica]	[more]
gi\|326490511\|dbj\|BAJ84919.1\|	1.9e-09	83.78	predicted protein [Hordeum vulgare subsp. vulgare]	[more]
gi\|645261309\|ref\|XP_008236232.1\|	2.5e-09	85.71	PREDICTED: ergosterol biosynthetic protein 28 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005352	Erg28

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019745	pentacyclic triterpenoid biosynthetic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.194290.1	Cucsa.194290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005352	Erg28	PFAM	PF03694	Erg28	coord: 3..38 score: 4.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.194290	Wild cucumber (PI 183967)	cgycpiB305
Cucsa.194290	Cucumber (Chinese Long) v2	cgycuB296
Cucsa.194290	Melon (DHL92) v3.5.1	cgymeB352
Cucsa.194290	Melon (DHL92) v3.6.1	cgymedB347
Cucsa.194290	Cucumber (Chinese Long) v3	cgycucB309